Wall clock time and date at job start Tue Mar 31 2020 05:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48505 * 109.47041 * 90.00185 * 3 2 1 5 5 H 1.48498 * 109.47207 * 330.00383 * 3 2 1 6 6 H 1.48498 * 109.47070 * 210.00140 * 3 2 1 7 7 C 1.37879 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99684 * 342.88987 * 7 2 1 9 9 C 1.50697 * 120.00084 * 162.89206 * 7 2 1 10 10 H 1.09002 * 109.50517 * 54.58587 * 9 7 2 11 11 C 1.53118 * 109.50411 * 294.50621 * 9 7 2 12 12 C 1.53123 * 109.16174 * 182.40360 * 11 9 7 13 13 C 1.53041 * 109.27643 * 57.65272 * 12 11 9 14 14 N 1.46840 * 109.52596 * 300.82086 * 13 12 11 15 15 C 1.46903 * 111.00469 * 185.83969 * 14 13 12 16 16 C 1.50702 * 109.46792 * 66.04559 * 15 14 13 17 17 N 1.28991 * 124.90249 * 90.00205 * 16 15 14 18 18 C 1.31828 * 117.13244 * 179.97438 * 17 16 15 19 19 C 1.33751 * 114.46256 * 0.02562 * 18 17 16 20 20 Cl 1.73600 * 126.04428 * 179.97438 * 19 18 17 21 21 S 1.70974 * 124.89869 * 269.70024 * 16 15 14 22 22 C 1.46854 * 111.19957 * 61.74001 * 14 13 12 23 23 H 0.97000 * 119.99801 * 174.69516 * 1 2 3 24 24 H 1.08997 * 109.52224 * 302.30677 * 11 9 7 25 25 H 1.08996 * 109.52622 * 62.43674 * 11 9 7 26 26 H 1.08996 * 109.50433 * 177.59457 * 12 11 9 27 27 H 1.09000 * 109.50094 * 297.67434 * 12 11 9 28 28 H 1.08999 * 109.46132 * 60.84022 * 13 12 11 29 29 H 1.09000 * 109.46006 * 180.81256 * 13 12 11 30 30 H 1.08997 * 109.47139 * 186.04511 * 15 14 13 31 31 H 1.09001 * 109.46493 * 306.04934 * 15 14 13 32 32 H 1.08000 * 122.76376 * 180.02562 * 18 17 16 33 33 H 1.08997 * 109.45992 * 178.24207 * 22 14 13 34 34 H 1.09003 * 109.45808 * 58.27590 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6527 -0.6999 6 1 3.5467 1.4402 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.5004 -2.1088 0.2742 9 6 3.4615 -1.2228 -0.3845 10 1 4.0153 -0.5181 0.2359 11 6 3.6098 -0.8330 -1.8578 12 6 5.0857 -0.9229 -2.2554 13 6 5.5941 -2.3424 -1.9933 14 7 5.4313 -2.6672 -0.5706 15 6 6.0348 -3.9688 -0.2552 16 6 7.5287 -3.8867 -0.4356 17 7 8.3663 -3.5526 0.4868 18 6 9.6433 -3.5314 0.1604 19 6 9.8959 -3.8664 -1.1097 20 17 11.4621 -3.9369 -1.8553 21 16 8.3587 -4.2301 -1.8903 22 6 4.0170 -2.6336 -0.1766 23 1 -0.4850 -0.8365 -0.0777 24 1 3.0241 -1.5139 -2.4754 25 1 3.2541 0.1871 -2.0023 26 1 5.1923 -0.6879 -3.3144 27 1 5.6655 -0.2133 -1.6650 28 1 5.0229 -3.0495 -2.5949 29 1 6.6486 -2.4059 -2.2619 30 1 5.8075 -4.2341 0.7773 31 1 5.6294 -4.7286 -0.9233 32 1 10.4213 -3.2655 0.8607 33 1 3.9261 -2.9086 0.8742 34 1 3.4532 -3.3394 -0.7867 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595619957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:43 Heat of formation + Delta-G solvation = 18.503819 kcal Electronic energy + Delta-G solvation = -18138.635458 eV Core-core repulsion = 15223.110430 eV Total energy + Delta-G solvation = -2915.525029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.060 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96991 -39.83932 -37.90033 -35.88079 -34.13671 -31.96760 -31.41366 -28.37666 -26.55753 -25.41387 -23.68999 -22.86148 -20.98451 -20.41023 -19.69400 -19.29277 -17.24224 -17.09817 -16.26824 -15.91487 -15.56932 -15.41698 -15.21224 -14.92911 -14.54509 -14.40866 -13.89098 -13.61618 -13.32324 -13.19590 -13.05668 -12.74178 -12.55566 -12.26158 -11.94665 -11.76886 -11.60467 -11.42491 -11.10053 -10.73576 -10.71787 -10.42149 -10.26322 -9.94898 -9.31074 -8.69607 -6.32227 -0.60675 -0.24583 0.45076 1.06584 1.51083 1.54460 1.60303 1.74537 2.52723 2.88907 3.09210 3.11758 3.83373 4.00859 4.06674 4.12264 4.27316 4.29429 4.42020 4.52095 4.63880 4.75810 4.80724 4.90978 4.95248 5.01429 5.21400 5.25498 5.52695 5.76538 5.86212 6.07558 6.10295 6.26133 6.57124 6.63112 7.43447 8.67653 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.035837 B = 0.003795 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.117265 B = 7376.933367 C = 7521.010734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.017 4.017 3 Si 1.080 2.920 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.237 1.237 7 C -0.598 4.598 8 H 0.020 0.980 9 C 0.024 3.976 10 H 0.025 0.975 11 C -0.116 4.116 12 C -0.113 4.113 13 C 0.053 3.947 14 N -0.542 5.542 15 C 0.125 3.875 16 C 0.057 3.943 17 N -0.476 5.476 18 C 0.052 3.948 19 C -0.204 4.204 20 Cl 0.014 6.986 21 S 0.204 5.796 22 C 0.091 3.909 23 H 0.253 0.747 24 H 0.041 0.959 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.201 0.799 33 H 0.061 0.939 34 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.944 -9.300 -6.344 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.215 4.215 3 Si 0.902 3.098 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.161 1.161 7 C -0.637 4.637 8 H 0.038 0.962 9 C 0.004 3.996 10 H 0.043 0.957 11 C -0.154 4.154 12 C -0.150 4.150 13 C -0.075 4.075 14 N -0.268 5.268 15 C -0.006 4.006 16 C -0.220 4.220 17 N -0.191 5.191 18 C -0.101 4.101 19 C -0.352 4.352 20 Cl 0.042 6.958 21 S 0.457 5.543 22 C -0.036 4.036 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.218 0.782 33 H 0.080 0.920 34 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 22.617 -7.545 -6.552 24.727 hybrid contribution -0.194 -2.155 0.387 2.199 sum 22.423 -9.701 -6.165 25.197 Atomic orbital electron populations 1.70939 1.08469 1.29588 1.48941 1.27070 0.95967 1.06129 0.92286 0.83659 0.76175 0.71907 0.78056 1.20510 1.21556 1.16103 1.22209 0.96676 0.94824 1.49941 0.96203 1.18993 0.93511 0.93631 0.93433 0.95715 1.21917 0.95478 1.00162 0.97888 1.21606 0.95641 0.96339 1.01450 1.22256 1.00873 0.97120 0.87228 1.61862 1.16611 1.28747 1.19583 1.20699 0.84450 0.91303 1.04123 1.26995 1.00947 1.01346 0.92720 1.66439 1.01929 1.16235 1.34499 1.22229 0.93177 1.00604 0.94135 1.27098 0.93656 1.16357 0.98136 1.98376 1.19583 1.96988 1.80829 1.83983 0.94850 1.61798 1.13635 1.21834 0.84830 0.97759 0.99184 0.93828 0.94049 0.93604 0.89791 0.92181 0.94111 0.89995 0.87687 0.90585 0.78236 0.92002 0.95952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.33 13.70 21.45 0.29 -59.04 16 2 C -0.02 -0.97 5.35 84.65 0.45 -0.52 16 3 Si 1.08 50.54 26.31 68.60 1.80 52.34 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.24 -9.84 5.50 99.48 0.55 -9.29 16 7 C -0.60 -33.61 8.83 25.60 0.23 -33.38 16 8 H 0.02 1.21 7.99 -2.91 -0.02 1.19 16 9 C 0.02 1.09 1.81 -11.49 -0.02 1.07 16 10 H 0.02 1.17 6.71 -2.39 -0.02 1.16 16 11 C -0.12 -4.75 4.72 30.67 0.14 -4.61 16 12 C -0.11 -3.57 6.09 30.65 0.19 -3.39 16 13 C 0.05 1.51 5.27 86.33 0.45 1.96 16 14 N -0.54 -17.35 4.65 -900.92 -4.19 -21.53 16 15 C 0.13 3.21 5.55 85.56 0.47 3.68 16 16 C 0.06 1.39 6.17 88.53 0.55 1.94 16 17 N -0.48 -12.49 10.54 -191.35 -2.02 -14.51 16 18 C 0.05 1.09 11.32 83.67 0.95 2.04 16 19 C -0.20 -3.89 7.21 66.80 0.48 -3.41 16 20 Cl 0.01 0.22 29.31 -2.72 -0.08 0.14 16 21 S 0.20 3.86 21.53 -56.49 -1.22 2.64 16 22 C 0.09 3.54 4.68 86.32 0.40 3.95 16 23 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 24 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.05 1.95 5.09 -2.39 -0.01 1.94 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 2.00 5.70 -2.39 -0.01 1.99 16 30 H 0.11 2.73 7.98 -2.39 -0.02 2.71 16 31 H 0.08 1.63 8.12 -2.39 -0.02 1.62 16 32 H 0.20 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.06 2.45 8.01 -2.39 -0.02 2.43 16 34 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -65.21 299.84 -0.19 -65.41 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 0.91 Total: 5.21 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 4.30 Total: -30.66 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -5.91 Total: -95.08 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 1.80 Total: 52.34 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.22 Total: 2.64 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -0.08 Total: 0.14 kcal Total: -65.21 -0.19 -65.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595619957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.910 kcal (2) G-P(sol) polarization free energy of solvation -65.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds