Wall clock time and date at job start Tue Mar 31 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38221 * 120.00788 * 2 1 4 4 C 1.38226 * 120.02532 * 180.27942 * 3 2 1 5 5 C 1.38265 * 120.04947 * 359.44039 * 4 3 2 6 6 C 1.50704 * 119.99039 * 180.30133 * 5 4 3 7 7 S 1.81402 * 109.47038 * 90.00090 * 6 5 4 8 8 O 1.42103 * 108.57752 * 294.49104 * 7 6 5 9 9 O 1.42100 * 108.57708 * 65.51442 * 7 6 5 10 10 C 1.81394 * 101.91834 * 180.02562 * 7 6 5 11 11 C 1.53006 * 109.46841 * 179.97438 * 10 7 6 12 12 C 1.50703 * 109.47221 * 180.02562 * 11 10 7 13 13 H 1.08005 * 119.99537 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00171 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99914 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00016 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47221 * 90.00025 * 16 14 12 18 18 H 1.48500 * 109.47109 * 210.00459 * 16 14 12 19 19 H 1.48503 * 109.46930 * 330.00145 * 16 14 12 20 20 C 1.38183 * 120.02475 * 0.28283 * 5 4 3 21 21 C 1.38431 * 120.01798 * 179.72477 * 2 1 3 22 22 F 1.35104 * 120.02518 * 359.97223 * 21 2 1 23 23 H 1.08995 * 109.46802 * 270.27158 * 1 2 3 24 24 H 1.08993 * 109.47375 * 30.27666 * 1 2 3 25 25 H 1.09000 * 109.46629 * 150.27856 * 1 2 3 26 26 H 1.08000 * 119.99099 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.97943 * 179.72632 * 4 3 2 28 28 H 1.08995 * 109.47182 * 210.00513 * 6 5 4 29 29 H 1.08997 * 109.46605 * 330.00375 * 6 5 4 30 30 H 1.09000 * 109.47564 * 299.99655 * 10 7 6 31 31 H 1.08999 * 109.47590 * 60.00717 * 10 7 6 32 32 H 1.08998 * 109.47544 * 300.00148 * 11 10 7 33 33 H 1.09006 * 109.46990 * 60.00341 * 11 10 7 34 34 H 0.97004 * 119.99797 * 179.97438 * 15 14 12 35 35 H 1.08004 * 120.00879 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5805 1.1974 -0.0058 5 6 4.2733 0.0008 0.0000 6 6 5.7803 0.0029 0.0005 7 16 6.3844 0.0117 1.7110 8 8 6.0070 1.2398 2.3181 9 8 6.0104 -1.2118 2.3295 10 6 8.1827 0.0138 1.4731 11 6 8.8774 0.0219 2.8364 12 6 10.3714 0.0243 2.6389 13 1 10.7841 0.0200 1.6408 14 6 11.2113 0.0309 3.7323 15 7 12.5151 0.0335 3.5599 16 14 10.4974 0.0375 5.4585 17 1 10.3108 -1.3607 5.9223 18 1 11.4273 0.7436 6.3760 19 1 9.1864 0.7351 5.4492 20 6 3.5843 -1.1970 0.0058 21 6 2.1996 -1.1986 0.0058 22 9 1.5249 -2.3691 0.0119 23 1 -0.3633 0.0049 1.0276 24 1 -0.3634 0.8874 -0.5181 25 1 -0.3632 -0.8925 -0.5095 26 1 1.6583 2.1322 0.0004 27 1 4.1199 2.1330 -0.0103 28 1 6.1451 -0.8889 -0.5091 29 1 6.1425 0.8909 -0.5173 30 1 8.4772 -0.8782 0.9202 31 1 8.4740 0.9018 0.9122 32 1 8.5829 0.9140 3.3891 33 1 8.5862 -0.8659 3.3978 34 1 13.1060 0.0385 4.3291 35 1 4.1257 -2.1316 0.0099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600663928.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:37 Heat of formation + Delta-G solvation = -105.203947 kcal Electronic energy + Delta-G solvation = -19879.819306 eV Core-core repulsion = 16498.300780 eV Total energy + Delta-G solvation = -3381.518526 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.09626 -39.57113 -36.64700 -35.69902 -34.29719 -33.95589 -31.52050 -30.84874 -29.97049 -26.27668 -25.33404 -23.17455 -21.67310 -20.96783 -18.64017 -17.42561 -17.32311 -16.94290 -16.21474 -15.98239 -15.80900 -15.72340 -15.28065 -14.40231 -14.28764 -13.86496 -13.71349 -13.60808 -13.44569 -13.04686 -12.81476 -12.43276 -12.39355 -11.92336 -11.83518 -11.72549 -11.66528 -11.40280 -11.26395 -11.18487 -10.87154 -10.44075 -10.12361 -9.67145 -9.38203 -9.12752 -8.72298 -8.66981 -6.17722 -4.19271 0.08481 0.91244 0.95992 3.04036 3.25305 3.27177 3.34417 3.39613 3.71440 3.99057 4.14762 4.28999 4.35782 4.46545 4.54144 4.76785 4.90871 5.02006 5.14585 5.18292 5.26259 5.29182 5.45452 5.47028 5.49260 5.69176 5.79586 5.81891 6.04173 6.11168 6.25145 6.60023 6.82368 6.94950 7.53620 8.34509 8.82728 9.42026 10.94538 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.038070 B = 0.003570 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.306592 B = 7841.179679 C = 7898.417898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.117 4.117 3 C -0.091 4.091 4 C -0.110 4.110 5 C -0.060 4.060 6 C -0.582 4.582 7 S 2.392 3.608 8 O -0.938 6.938 9 O -0.938 6.938 10 C -0.565 4.565 11 C -0.007 4.007 12 C -0.521 4.521 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.869 3.131 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.261 1.261 20 C -0.135 4.135 21 C 0.098 3.902 22 F -0.136 7.136 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.138 0.862 27 H 0.139 0.861 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.035 0.965 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.144 1.200 -10.480 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.118 4.118 3 C -0.109 4.109 4 C -0.129 4.129 5 C -0.061 4.061 6 C -0.706 4.706 7 S 2.577 3.423 8 O -0.935 6.935 9 O -0.935 6.935 10 C -0.697 4.697 11 C -0.046 4.046 12 C -0.560 4.560 13 H 0.096 0.904 14 C -0.131 4.131 15 N -0.534 5.534 16 Si 0.695 3.305 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.185 1.185 20 C -0.155 4.155 21 C 0.078 3.922 22 F -0.114 7.114 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.156 0.844 27 H 0.157 0.843 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.520 1.156 -9.626 23.603 hybrid contribution 0.271 -0.283 0.052 0.395 sum -21.249 0.873 -9.574 23.323 Atomic orbital electron populations 1.20745 0.89931 1.03368 1.03054 1.20034 0.97254 0.91985 1.02549 1.20928 0.93755 0.97258 0.98995 1.21253 0.94477 0.97947 0.99227 1.18778 0.92295 0.93280 1.01775 1.29537 1.00677 1.12583 1.27793 1.09029 0.80155 0.75699 0.77405 1.93548 1.82357 1.45244 1.72335 1.93553 1.82416 1.45646 1.71907 1.30070 1.18589 1.10943 1.10121 1.19437 0.98301 0.98222 0.88609 1.20860 0.87361 1.52438 0.95381 0.90386 1.24975 0.94734 0.94075 0.99277 1.69881 1.02386 1.49964 1.31135 0.86921 0.79870 0.79177 0.84493 1.19653 1.20764 1.18519 1.21134 0.92587 0.99506 1.02258 1.17413 0.89719 0.81098 1.03933 1.91490 1.80178 1.45849 1.93904 0.90544 0.90800 0.91114 0.84417 0.84279 0.83874 0.83720 0.85478 0.85434 0.94677 0.95142 0.92352 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.83 36.01 0.35 -0.51 16 2 C -0.12 -1.21 5.89 -104.56 -0.62 -1.82 16 3 C -0.09 -0.88 9.70 -39.59 -0.38 -1.26 16 4 C -0.11 -1.19 9.70 -39.58 -0.38 -1.58 16 5 C -0.06 -0.72 5.14 -104.63 -0.54 -1.26 16 6 C -0.58 -6.15 5.93 36.01 0.21 -5.94 16 7 S 2.39 37.73 4.70 -107.50 -0.51 37.23 16 8 O -0.94 -17.43 18.10 -57.83 -1.05 -18.48 16 9 O -0.94 -17.75 18.10 -57.83 -1.05 -18.79 16 10 C -0.56 -9.64 5.74 37.16 0.21 -9.42 16 11 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 12 C -0.52 -14.39 9.66 -34.44 -0.33 -14.72 16 13 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 14 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 16 Si 0.87 21.47 27.47 -169.99 -4.67 16.80 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.26 -6.26 6.54 56.52 0.37 -5.90 16 20 C -0.14 -1.67 9.68 -39.51 -0.38 -2.05 16 21 C 0.10 1.18 7.24 -39.42 -0.29 0.89 16 22 F -0.14 -1.66 16.48 2.25 0.04 -1.63 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 25 H 0.07 0.52 7.64 -51.93 -0.40 0.13 16 26 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 27 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 28 H 0.14 1.14 8.08 -51.93 -0.42 0.72 16 29 H 0.14 1.10 8.08 -51.93 -0.42 0.68 16 30 H 0.13 1.89 8.14 -51.92 -0.42 1.46 16 31 H 0.13 1.88 8.14 -51.92 -0.42 1.46 16 32 H 0.04 0.83 7.20 -51.93 -0.37 0.45 16 33 H 0.03 0.71 7.57 -51.93 -0.39 0.32 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 319.16 15.07 4.81 4.81 Total: -1.00 -35.31 319.16 -8.54 -43.85 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -4.55 Total: -1.67 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: -2.35 Total: -35.98 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.77 Total: -26.15 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -2.09 Total: -37.27 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 37.73 SS G_CDS: -0.51 Total: 37.23 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.31 -8.54 -43.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600663928.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.353 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds