Wall clock time and date at job start Tue Mar 31 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39256 * 120.57912 * 137.61206 * 3 2 1 5 5 C 1.39556 * 118.96571 * 179.72189 * 4 3 2 6 6 C 1.35689 * 120.13501 * 0.22938 * 5 4 3 7 7 C 1.50697 * 119.38721 * 180.02562 * 6 5 4 8 8 F 1.39900 * 109.47180 * 359.97438 * 7 6 5 9 9 F 1.39893 * 109.47337 * 120.00114 * 7 6 5 10 10 F 1.39903 * 109.47169 * 240.00310 * 7 6 5 11 11 N 1.35525 * 121.22715 * 0.02562 * 6 5 4 12 12 C 1.46499 * 119.47538 * 180.02562 * 11 6 5 13 13 C 1.53003 * 109.46639 * 90.00263 * 12 11 6 14 14 C 1.50699 * 109.46570 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00496 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99795 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99810 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99968 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47006 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46840 * 120.00200 * 18 16 14 21 21 H 1.48499 * 109.47080 * 240.00136 * 18 16 14 22 22 C 1.34662 * 121.04195 * 0.04302 * 11 6 5 23 23 O 1.21900 * 120.09967 * 179.97438 * 22 11 6 24 24 H 1.08002 * 120.52188 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.93454 * 180.25511 * 5 4 3 26 26 H 1.09004 * 109.46781 * 209.99899 * 12 11 6 27 27 H 1.08996 * 109.47460 * 330.00088 * 12 11 6 28 28 H 1.08995 * 109.47390 * 299.99642 * 13 12 11 29 29 H 1.09004 * 109.47188 * 60.00022 * 13 12 11 30 30 H 0.97001 * 119.99444 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2761 0.8865 -0.8082 5 6 4.6711 0.8621 -0.7774 6 6 5.3194 -0.0176 0.0271 7 6 6.8262 -0.0290 0.0476 8 9 7.3120 0.9428 -0.8338 9 9 7.2771 0.2482 1.3425 10 9 7.2885 -1.2889 -0.3475 11 7 4.6371 -0.8861 0.8124 12 6 5.3760 -1.8190 1.6667 13 6 5.6254 -1.1729 3.0310 14 6 6.3850 -2.1328 3.9100 15 1 6.6625 -3.1061 3.5331 16 6 6.7267 -1.7680 5.1950 17 7 6.3892 -0.5825 5.6538 18 14 7.6689 -2.9576 6.2844 19 1 7.9262 -4.2150 5.5375 20 1 8.9619 -2.3456 6.6830 21 1 6.8680 -3.2574 7.4984 22 6 3.2906 -0.9053 0.8196 23 8 2.6942 -1.6941 1.5324 24 1 2.7539 1.5849 -1.4453 25 1 5.2359 1.5450 -1.3947 26 1 4.7935 -2.7310 1.7976 27 1 6.3305 -2.0614 1.1995 28 1 6.2078 -0.2609 2.9001 29 1 4.6709 -0.9305 3.4982 30 1 6.6298 -0.3258 6.5577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603374984.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:03 Heat of formation + Delta-G solvation = -114.687025 kcal Electronic energy + Delta-G solvation = -22759.934048 eV Core-core repulsion = 18720.623574 eV Total energy + Delta-G solvation = -4039.310473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.41600 -47.96104 -47.72666 -41.56228 -37.31191 -36.78083 -35.05622 -33.11835 -31.34026 -30.01781 -27.37573 -25.71525 -23.52633 -23.24213 -21.40976 -19.57651 -18.93916 -18.66701 -18.48736 -17.51410 -16.71419 -15.71378 -15.67290 -15.22185 -14.80486 -14.65115 -14.51364 -14.36165 -14.17245 -14.07155 -13.85452 -13.49272 -13.42327 -12.97646 -12.74275 -12.58900 -12.37657 -12.22556 -12.14725 -11.59690 -11.05083 -10.91947 -10.40355 -10.19284 -10.06481 -9.64110 -9.34066 -8.48284 -8.21459 -6.13987 -4.18295 -0.11046 1.45592 1.95155 2.40907 2.72345 2.85076 3.25509 3.31074 3.33600 3.36957 3.65541 3.80021 3.85987 4.14917 4.36038 4.36907 4.59709 4.79982 5.23362 5.29551 5.39632 5.60790 5.67976 5.93727 6.03216 6.34209 6.74232 7.42719 7.47827 7.51912 7.79935 7.88381 8.15099 8.85576 9.46292 10.97445 Molecular weight = 286.07amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.006440 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.505161 B = 4346.596182 C = 5631.821175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.281 3.719 3 C -0.143 4.143 4 C 0.048 3.952 5 C -0.197 4.197 6 C 0.118 3.882 7 C 0.505 3.495 8 F -0.163 7.163 9 F -0.138 7.138 10 F -0.164 7.164 11 N -0.456 5.456 12 C 0.062 3.938 13 C 0.005 3.995 14 C -0.523 4.523 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.283 1.283 22 C 0.536 3.464 23 O -0.510 6.510 24 H 0.157 0.843 25 H 0.170 0.830 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.041 0.959 29 H 0.028 0.972 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.951 5.208 -16.147 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.034 4.034 3 C -0.152 4.152 4 C 0.023 3.977 5 C -0.221 4.221 6 C 0.002 3.998 7 C 0.450 3.550 8 F -0.144 7.144 9 F -0.119 7.119 10 F -0.145 7.145 11 N -0.161 5.161 12 C -0.056 4.056 13 C -0.032 4.032 14 C -0.562 4.562 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.209 1.209 22 C 0.334 3.666 23 O -0.388 6.388 24 H 0.174 0.826 25 H 0.187 0.813 26 H 0.123 0.877 27 H 0.112 0.888 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.140 4.682 -15.420 16.116 hybrid contribution 1.255 -0.531 0.748 1.555 sum 1.115 4.151 -14.672 15.288 Atomic orbital electron populations 1.81200 1.11552 1.08080 1.08300 1.24611 0.91462 0.93674 0.93637 1.17042 0.86454 1.04898 1.06794 1.21753 0.92877 0.92059 0.91054 1.20449 0.94583 1.02785 1.04321 1.20739 0.91337 0.93678 0.94095 1.18035 0.86717 0.74639 0.75621 1.93208 1.89009 1.63055 1.69146 1.93431 1.90087 1.93210 1.35164 1.93226 1.90075 1.40522 1.90648 1.45864 1.08284 1.29116 1.32877 1.23201 0.95800 0.92979 0.93614 1.19696 0.98544 0.97421 0.87587 1.20931 1.36320 1.01065 0.97878 0.92148 1.24968 0.95834 0.95334 0.97868 1.69969 1.46059 1.19495 1.17158 0.86447 0.79516 0.81046 0.80492 1.19561 1.20849 1.20862 1.16528 0.80294 0.85578 0.84246 1.91027 1.65771 1.40181 1.41804 0.82553 0.81297 0.87685 0.88834 0.94102 0.95345 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.96 18.54 41.84 0.78 -6.19 16 2 C 0.28 4.25 14.94 -22.47 -0.34 3.92 16 3 C -0.14 -1.92 5.79 -106.18 -0.62 -2.54 16 4 C 0.05 0.41 9.88 -38.71 -0.38 0.03 16 5 C -0.20 -1.70 9.37 -40.00 -0.37 -2.08 16 6 C 0.12 1.49 6.14 -81.87 -0.50 0.98 16 7 C 0.51 6.40 2.79 36.00 0.10 6.50 16 8 F -0.16 -1.65 15.87 2.25 0.04 -1.61 16 9 F -0.14 -2.26 13.72 2.25 0.03 -2.23 16 10 F -0.16 -2.12 15.18 2.25 0.03 -2.08 16 11 N -0.46 -7.41 2.58 -114.71 -0.30 -7.70 16 12 C 0.06 1.19 4.59 -4.04 -0.02 1.17 16 13 C 0.00 0.12 5.03 -27.88 -0.14 -0.02 16 14 C -0.52 -14.00 9.11 -34.44 -0.31 -14.32 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 18 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.54 9.29 7.43 -14.90 -0.11 9.18 16 23 O -0.51 -11.05 16.09 5.01 0.08 -10.97 16 24 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 25 H 0.17 0.89 7.04 -52.49 -0.37 0.52 16 26 H 0.10 2.10 7.38 -51.93 -0.38 1.72 16 27 H 0.09 1.62 5.15 -51.93 -0.27 1.36 16 28 H 0.04 1.01 5.50 -51.93 -0.29 0.72 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 283.97 15.07 4.28 4.28 Total: -1.00 -32.47 283.97 -3.83 -36.29 By element: Atomic # 1 Polarization: -3.45 SS G_CDS: -1.69 Total: -5.15 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -2.79 Total: 4.46 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 1.22 Total: -38.98 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.10 Total: -5.92 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.47 -3.83 -36.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603374984.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.392 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds