Wall clock time and date at job start Tue Mar 31 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39256 * 120.57912 * 137.61206 * 3 2 1 5 5 C 1.39556 * 118.96571 * 179.72189 * 4 3 2 6 6 C 1.35689 * 120.13501 * 0.22938 * 5 4 3 7 7 C 1.50697 * 119.38721 * 180.02562 * 6 5 4 8 8 F 1.39900 * 109.47180 * 359.97438 * 7 6 5 9 9 F 1.39893 * 109.47337 * 120.00114 * 7 6 5 10 10 F 1.39903 * 109.47169 * 240.00310 * 7 6 5 11 11 N 1.35525 * 121.22715 * 0.02562 * 6 5 4 12 12 C 1.46499 * 119.47538 * 180.02562 * 11 6 5 13 13 C 1.53003 * 109.46639 * 90.00263 * 12 11 6 14 14 C 1.50699 * 109.46570 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00496 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99795 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99810 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99968 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47006 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46840 * 120.00200 * 18 16 14 21 21 H 1.48499 * 109.47080 * 240.00136 * 18 16 14 22 22 C 1.34662 * 121.04195 * 0.04302 * 11 6 5 23 23 O 1.21900 * 120.09967 * 179.97438 * 22 11 6 24 24 H 1.08002 * 120.52188 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.93454 * 180.25511 * 5 4 3 26 26 H 1.09004 * 109.46781 * 209.99899 * 12 11 6 27 27 H 1.08996 * 109.47460 * 330.00088 * 12 11 6 28 28 H 1.08995 * 109.47390 * 299.99642 * 13 12 11 29 29 H 1.09004 * 109.47188 * 60.00022 * 13 12 11 30 30 H 0.97001 * 119.99444 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2761 0.8865 -0.8082 5 6 4.6711 0.8621 -0.7774 6 6 5.3194 -0.0176 0.0271 7 6 6.8262 -0.0290 0.0476 8 9 7.3120 0.9428 -0.8338 9 9 7.2771 0.2482 1.3425 10 9 7.2885 -1.2889 -0.3475 11 7 4.6371 -0.8861 0.8124 12 6 5.3760 -1.8190 1.6667 13 6 5.6254 -1.1729 3.0310 14 6 6.3850 -2.1328 3.9100 15 1 6.6625 -3.1061 3.5331 16 6 6.7267 -1.7680 5.1950 17 7 6.3892 -0.5825 5.6538 18 14 7.6689 -2.9576 6.2844 19 1 7.9262 -4.2150 5.5375 20 1 8.9619 -2.3456 6.6830 21 1 6.8680 -3.2574 7.4984 22 6 3.2906 -0.9053 0.8196 23 8 2.6942 -1.6941 1.5324 24 1 2.7539 1.5849 -1.4453 25 1 5.2359 1.5450 -1.3947 26 1 4.7935 -2.7310 1.7976 27 1 6.3305 -2.0614 1.1995 28 1 6.2078 -0.2609 2.9001 29 1 4.6709 -0.9305 3.4982 30 1 6.6298 -0.3258 6.5577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603374984.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:02 Heat of formation + Delta-G solvation = -135.812849 kcal Electronic energy + Delta-G solvation = -22760.850132 eV Core-core repulsion = 18720.623574 eV Total energy + Delta-G solvation = -4040.226558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.067 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.43722 -48.90635 -48.84132 -42.74998 -38.58693 -37.98562 -36.42996 -34.94877 -32.56819 -31.67426 -28.40099 -27.44347 -24.75869 -24.55718 -22.97272 -20.77254 -19.97380 -19.70916 -19.55659 -18.85687 -18.39341 -17.16531 -16.85669 -16.59827 -16.36455 -15.80433 -15.75270 -15.56718 -15.21127 -14.99437 -14.92612 -14.77188 -14.60632 -14.34638 -14.21371 -14.03197 -13.77345 -13.45146 -13.25126 -13.23326 -12.89363 -12.60840 -12.02250 -12.01408 -11.56082 -11.22813 -11.09217 -10.59386 -9.41895 -8.24847 -6.36036 -1.09775 0.49019 0.85890 1.26894 1.40170 1.41721 1.53452 1.54837 1.70299 2.30050 2.39750 2.52144 2.75082 2.86850 3.09041 3.12389 3.32898 3.72769 3.84793 4.09423 4.28999 4.39014 4.50745 4.62519 4.80381 5.10061 5.35355 5.40387 5.67637 5.73537 6.08467 6.36497 6.63333 6.78014 7.32950 8.87650 Molecular weight = 286.07amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.006440 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.505161 B = 4346.596182 C = 5631.821175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.297 3.703 3 C -0.167 4.167 4 C 0.099 3.901 5 C -0.151 4.151 6 C 0.089 3.911 7 C 0.510 3.490 8 F -0.141 7.141 9 F -0.165 7.165 10 F -0.166 7.166 11 N -0.468 5.468 12 C 0.082 3.918 13 C 0.013 3.987 14 C -0.540 4.540 15 H 0.067 0.933 16 C 0.006 3.994 17 N -0.928 5.928 18 Si 0.966 3.034 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.284 1.284 22 C 0.525 3.475 23 O -0.577 6.577 24 H 0.218 0.782 25 H 0.222 0.778 26 H 0.086 0.914 27 H 0.112 0.888 28 H 0.036 0.964 29 H -0.019 1.019 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 6.631 -18.785 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.017 4.017 3 C -0.175 4.175 4 C 0.074 3.926 5 C -0.174 4.174 6 C -0.025 4.025 7 C 0.455 3.545 8 F -0.122 7.122 9 F -0.146 7.146 10 F -0.148 7.148 11 N -0.174 5.174 12 C -0.038 4.038 13 C -0.024 4.024 14 C -0.579 4.579 15 H 0.085 0.915 16 C -0.193 4.193 17 N -0.568 5.568 18 Si 0.790 3.210 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.210 1.210 22 C 0.325 3.675 23 O -0.460 6.460 24 H 0.235 0.765 25 H 0.239 0.761 26 H 0.105 0.895 27 H 0.130 0.870 28 H 0.054 0.946 29 H 0.000 1.000 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.129 6.141 -18.119 19.165 hybrid contribution 0.910 -0.841 1.417 1.883 sum 2.040 5.300 -16.702 17.641 Atomic orbital electron populations 1.81206 1.12623 1.09469 1.09756 1.24828 0.91725 0.92596 0.92541 1.16940 0.85580 1.06388 1.08582 1.22454 0.92569 0.89546 0.88025 1.21239 0.94753 1.00126 1.01300 1.21117 0.91363 0.94676 0.95323 1.17994 0.86783 0.74905 0.74864 1.93249 1.88774 1.62085 1.68098 1.93369 1.90406 1.93408 1.37436 1.93218 1.90151 1.40889 1.90497 1.45490 1.07971 1.30104 1.33850 1.22607 0.96644 0.92527 0.92040 1.19460 0.95586 0.97324 0.90039 1.21413 1.36098 1.01708 0.98665 0.91510 1.25903 0.96858 0.97018 0.99506 1.70096 1.47554 1.21483 1.17657 0.85386 0.78167 0.79169 0.78282 1.18277 1.19898 1.20964 1.17113 0.80504 0.85652 0.84191 1.90980 1.67017 1.43099 1.44910 0.76547 0.76097 0.89511 0.87018 0.94595 1.00012 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.13 18.54 19.01 0.35 -14.78 16 2 C 0.30 8.74 14.94 88.33 1.32 10.06 16 3 C -0.17 -4.16 5.79 -20.87 -0.12 -4.28 16 4 C 0.10 1.14 9.88 22.83 0.23 1.36 16 5 C -0.15 -1.74 9.37 22.00 0.21 -1.54 16 6 C 0.09 1.99 6.14 41.40 0.25 2.25 16 7 C 0.51 11.77 2.79 71.24 0.20 11.97 16 8 F -0.14 -2.26 15.87 44.97 0.71 -1.55 16 9 F -0.17 -5.32 13.72 44.97 0.62 -4.70 16 10 F -0.17 -4.02 15.18 44.97 0.68 -3.34 16 11 N -0.47 -15.22 2.58 -635.02 -1.64 -16.86 16 12 C 0.08 3.25 4.59 86.38 0.40 3.65 16 13 C 0.01 0.68 5.03 29.85 0.15 0.83 16 14 C -0.54 -29.84 9.11 25.60 0.23 -29.61 16 15 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 16 C 0.01 0.33 5.46 84.66 0.46 0.79 16 17 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 18 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 C 0.52 18.55 7.43 85.17 0.63 19.18 16 23 O -0.58 -26.72 16.09 -4.99 -0.08 -26.80 16 24 H 0.22 0.12 8.06 -2.91 -0.02 0.09 16 25 H 0.22 0.44 7.04 -2.91 -0.02 0.42 16 26 H 0.09 3.72 7.38 -2.39 -0.02 3.70 16 27 H 0.11 3.95 5.15 -2.39 -0.01 3.93 16 28 H 0.04 1.85 5.50 -2.39 -0.01 1.84 16 29 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 30 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -78.40 283.97 8.14 -70.26 By element: Atomic # 1 Polarization: -8.40 SS G_CDS: 1.22 Total: -7.18 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 3.96 Total: 14.67 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -1.00 Total: -87.02 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.08 Total: -26.80 kcal Atomic # 9 Polarization: -11.61 SS G_CDS: 2.01 Total: -9.59 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -78.40 8.14 -70.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603374984.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.554 kcal (2) G-P(sol) polarization free energy of solvation -78.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds