Wall clock time and date at job start Tue Mar 31 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00398 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00712 * 3 2 1 5 5 H 1.48508 * 109.46650 * 30.00205 * 3 2 1 6 6 H 1.48499 * 109.47411 * 150.00125 * 3 2 1 7 7 C 1.37882 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47317 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00266 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00135 * 0.27234 * 11 10 9 13 13 C 1.50706 * 119.99766 * 179.97438 * 11 10 9 14 14 N 1.46500 * 109.46949 * 179.97438 * 13 11 10 15 15 C 1.39740 * 120.00150 * 180.02562 * 14 13 11 16 16 C 1.38907 * 120.06575 * 359.72010 * 15 14 13 17 17 C 1.38116 * 119.98886 * 179.76947 * 16 15 14 18 18 C 1.38270 * 120.11179 * 0.51156 * 17 16 15 19 19 C 1.38484 * 120.13027 * 359.74409 * 18 17 16 20 20 F 1.35108 * 119.99147 * 179.97438 * 19 18 17 21 21 C 1.38417 * 120.01668 * 0.02562 * 19 18 17 22 22 Cl 1.73603 * 120.06045 * 179.97438 * 21 19 18 23 23 H 0.97002 * 119.99804 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47103 * 60.00166 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 26 26 H 0.96999 * 119.99691 * 359.97438 * 10 9 7 27 27 H 1.09000 * 109.47161 * 299.99737 * 13 11 10 28 28 H 1.09001 * 109.46740 * 59.99879 * 13 11 10 29 29 H 0.97010 * 119.99910 * 359.97438 * 14 13 11 30 30 H 1.08007 * 120.00526 * 0.02763 * 16 15 14 31 31 H 1.08000 * 119.94643 * 180.23138 * 17 16 15 32 32 H 1.07998 * 119.93218 * 179.76641 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0065 13 6 2.7330 -6.0289 -0.0016 14 7 2.0004 -7.2976 -0.0015 15 6 2.6991 -8.5078 -0.0015 16 6 4.0882 -8.5095 -0.0074 17 6 4.7771 -9.7065 -0.0025 18 6 4.0865 -10.9044 -0.0024 19 6 2.7016 -10.9083 -0.0018 20 9 2.0296 -12.0804 -0.0023 21 6 2.0058 -9.7118 -0.0019 22 17 0.2697 -9.7154 -0.0019 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.1566 -3.4355 -0.0009 27 1 3.3595 -5.9708 -0.8917 28 1 3.3597 -5.9714 0.8883 29 1 1.0303 -7.2975 -0.0007 30 1 4.6294 -7.5748 -0.0116 31 1 5.8571 -9.7070 -0.0033 32 1 4.6281 -11.8387 -0.0024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690289295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:37 Heat of formation + Delta-G solvation = -67.763595 kcal Electronic energy + Delta-G solvation = -19036.797666 eV Core-core repulsion = 15551.318626 eV Total energy + Delta-G solvation = -3485.479041 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.10672 -39.87018 -38.86925 -36.57030 -35.43574 -34.33281 -32.48603 -30.82691 -30.02683 -27.95965 -26.16467 -23.22168 -22.78679 -21.82016 -19.98209 -18.48218 -17.67991 -16.82080 -16.49538 -15.95601 -15.92130 -15.53087 -15.43761 -14.99633 -14.75186 -14.37305 -13.91856 -13.78243 -13.21916 -12.85458 -12.82166 -12.24814 -12.06834 -11.86438 -11.80601 -11.63184 -11.07458 -11.01012 -10.96070 -10.41119 -10.37273 -9.51307 -9.37721 -8.90551 -8.84981 -8.08962 -7.73690 -6.25093 -4.32989 0.82328 1.12199 1.98296 2.96516 3.05360 3.18964 3.25504 3.27551 3.33320 3.90249 4.05912 4.28075 4.57091 4.64397 4.93820 5.04799 5.11309 5.17058 5.27363 5.27762 5.52680 5.73395 5.76070 6.10513 6.42040 6.87435 7.15643 7.20880 7.38308 7.49278 7.54507 7.85980 8.40486 8.61909 8.86263 9.33711 10.84998 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.037551 B = 0.002936 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.472867 B = 9535.375551 C =10260.399102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.704 5.704 11 C 0.492 3.508 12 O -0.550 6.550 13 C 0.099 3.901 14 N -0.718 5.718 15 C 0.263 3.737 16 C -0.204 4.204 17 C -0.035 4.035 18 C -0.212 4.212 19 C 0.158 3.842 20 F -0.129 7.129 21 C -0.161 4.161 22 Cl -0.051 7.051 23 H 0.267 0.733 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.394 0.606 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.418 0.582 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.776 -19.150 0.006 21.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.352 5.352 11 C 0.275 3.725 12 O -0.429 6.429 13 C -0.030 4.030 14 N -0.348 5.348 15 C 0.154 3.846 16 C -0.227 4.227 17 C -0.054 4.054 18 C -0.233 4.233 19 C 0.137 3.863 20 F -0.107 7.107 21 C -0.194 4.194 22 Cl -0.022 7.022 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.227 0.773 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.259 0.741 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.621 -18.950 0.008 21.252 hybrid contribution 0.192 0.863 -0.004 0.884 sum 9.812 -18.088 0.003 20.578 Atomic orbital electron populations 1.69970 1.06149 1.27477 1.48543 1.24961 0.94932 0.99546 0.94553 0.86390 0.79606 0.82497 0.78277 1.20406 1.20958 1.19687 1.21193 0.93294 0.90305 1.53688 0.91766 1.19178 0.88223 0.81740 0.97982 1.46406 1.11501 1.05751 1.71530 1.20260 0.89332 0.84662 0.78212 1.90681 1.16625 1.84458 1.51139 1.21246 0.94858 0.83264 1.03584 1.44690 1.10072 1.01192 1.78874 1.17282 0.91203 0.84501 0.91660 1.20726 0.90924 0.99688 1.11400 1.20809 1.00122 0.90722 0.93735 1.20821 0.91041 1.00115 1.11367 1.17107 0.89810 0.79538 0.99813 1.91525 1.80615 1.45159 1.93434 1.20303 0.85732 0.92809 1.20534 1.98375 1.07891 1.98506 1.97427 0.92328 0.95297 0.95307 0.77341 0.88958 0.88981 0.74123 0.84412 0.84485 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.43 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.22 29.54 -169.99 -5.02 15.19 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 7 C -0.55 -14.20 9.28 -34.44 -0.32 -14.52 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.28 5.43 -5.20 -0.03 6.25 16 10 N -0.70 -13.45 5.55 -61.47 -0.34 -13.79 16 11 C 0.49 8.86 7.90 -10.98 -0.09 8.77 16 12 O -0.55 -12.31 15.67 5.56 0.09 -12.22 16 13 C 0.10 1.21 5.39 -5.19 -0.03 1.19 16 14 N -0.72 -9.69 5.66 -59.78 -0.34 -10.03 16 15 C 0.26 3.15 6.65 -83.75 -0.56 2.59 16 16 C -0.20 -1.89 9.31 -39.38 -0.37 -2.26 16 17 C -0.03 -0.27 10.04 -39.61 -0.40 -0.67 16 18 C -0.21 -1.89 10.02 -39.48 -0.40 -2.29 16 19 C 0.16 1.81 7.27 -39.42 -0.29 1.53 16 20 F -0.13 -1.56 16.84 2.25 0.04 -1.52 16 21 C -0.16 -2.04 6.34 -39.26 -0.25 -2.28 16 22 Cl -0.05 -0.68 27.25 -51.86 -1.41 -2.10 16 23 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.39 6.17 8.32 -40.82 -0.34 5.83 16 27 H 0.09 0.91 7.94 -51.93 -0.41 0.50 16 28 H 0.09 0.91 7.96 -51.93 -0.41 0.50 16 29 H 0.42 6.51 6.11 -40.82 -0.25 6.26 16 30 H 0.14 1.00 6.73 -52.48 -0.35 0.65 16 31 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 303.57 15.07 4.57 4.57 Total: -1.00 -31.06 303.57 -7.48 -38.54 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -2.99 Total: 6.10 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -2.81 Total: -0.06 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.06 Total: -48.51 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.41 Total: -2.10 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.06 -7.48 -38.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690289295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.222 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds