Wall clock time and date at job start Tue Mar 31 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99542 * 2 1 4 4 H 1.48493 * 109.47400 * 274.99080 * 3 2 1 5 5 H 1.48504 * 109.47018 * 34.98830 * 3 2 1 6 6 H 1.48501 * 109.47063 * 154.98418 * 3 2 1 7 7 C 1.37869 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00233 * 189.55719 * 7 2 1 9 9 C 1.50703 * 120.00338 * 9.55893 * 7 2 1 10 10 H 1.09003 * 109.50086 * 305.51419 * 9 7 2 11 11 C 1.53113 * 109.50031 * 65.62563 * 9 7 2 12 12 C 1.53120 * 109.16182 * 177.59708 * 11 9 7 13 13 C 1.53033 * 109.28004 * 302.34977 * 12 11 9 14 14 N 1.46846 * 109.52486 * 59.17140 * 13 12 11 15 15 C 1.46905 * 111.00011 * 174.16114 * 14 13 12 16 16 C 1.50692 * 109.47148 * 294.21262 * 15 14 13 17 17 S 1.76194 * 126.03928 * 270.02424 * 16 15 14 18 18 C 1.70975 * 90.29512 * 179.74053 * 17 16 15 19 19 N 1.29055 * 110.18332 * 359.97438 * 18 17 16 20 20 C 1.31813 * 117.11768 * 0.02562 * 19 18 17 21 21 Cl 1.73592 * 122.76099 * 180.02562 * 20 19 18 22 22 C 1.46845 * 111.20165 * 298.26222 * 14 13 12 23 23 H 0.96999 * 120.00417 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.52641 * 297.50509 * 11 9 7 25 25 H 1.09007 * 109.52706 * 57.69635 * 11 9 7 26 26 H 1.09005 * 109.50075 * 62.28562 * 12 11 9 27 27 H 1.09002 * 109.50550 * 182.40735 * 12 11 9 28 28 H 1.09007 * 109.46143 * 299.16136 * 13 12 11 29 29 H 1.09000 * 109.46866 * 179.19608 * 13 12 11 30 30 H 1.09008 * 109.46731 * 174.21464 * 15 14 13 31 31 H 1.08995 * 109.46720 * 54.21618 * 15 14 13 32 32 H 1.08002 * 124.90856 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.46475 * 181.75318 * 22 14 13 34 34 H 1.08999 * 109.46524 * 301.72588 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1075 -1.3947 5 1 1.5031 2.6200 0.8028 6 1 3.5953 1.4122 0.5921 7 6 2.0046 -1.1939 0.0005 8 1 3.0734 -1.2003 0.1558 9 6 1.2669 -2.4902 -0.2156 10 1 0.4552 -2.5718 0.5073 11 6 0.6935 -2.5214 -1.6350 12 6 -0.0023 -3.8656 -1.8664 13 6 0.9997 -4.9993 -1.6376 14 7 1.5188 -4.9262 -0.2659 15 6 2.3782 -6.0793 0.0339 16 6 1.5506 -7.3385 0.0246 17 16 0.7157 -8.0405 1.4083 18 6 0.1334 -9.3111 0.4235 19 7 0.5532 -9.1638 -0.7879 20 6 1.3151 -8.1173 -1.0367 21 17 1.9589 -7.7774 -2.6126 22 6 2.2323 -3.6638 -0.0347 23 1 -0.4851 0.8400 -0.0004 24 1 -0.0274 -1.7127 -1.7545 25 1 1.5012 -2.4003 -2.3570 26 1 -0.8344 -3.9693 -1.1699 27 1 -0.3756 -3.9108 -2.8896 28 1 1.8247 -4.9029 -2.3437 29 1 0.5038 -5.9583 -1.7877 30 1 2.8308 -5.9492 1.0171 31 1 3.1620 -6.1539 -0.7198 32 1 -0.4949 -10.1202 0.7658 33 1 2.6315 -3.6526 0.9795 34 1 3.0514 -3.5735 -0.7482 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721153208.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:13 Heat of formation + Delta-G solvation = 36.696921 kcal Electronic energy + Delta-G solvation = -18421.841263 eV Core-core repulsion = 15507.105146 eV Total energy + Delta-G solvation = -2914.736117 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.060 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.97833 -38.18197 -36.58684 -34.17363 -32.23510 -30.45614 -29.65668 -26.68788 -24.95975 -24.38804 -22.01509 -21.31521 -20.24363 -18.66415 -18.28125 -16.48491 -15.98951 -15.62113 -14.79656 -14.65797 -14.30938 -14.23449 -13.59882 -13.28157 -12.89921 -12.38853 -12.32348 -12.08045 -11.89844 -11.64807 -11.37870 -11.06567 -10.93760 -10.72305 -10.61646 -10.13300 -9.91639 -9.84906 -9.54282 -9.45829 -9.06407 -8.85278 -8.75400 -8.30889 -7.77431 -6.01260 -4.03069 0.47436 0.96951 1.39155 2.22851 2.46735 3.30536 3.38190 3.40476 4.26367 4.38736 4.53571 4.88385 4.91128 5.31170 5.42436 5.55398 5.67938 5.73702 5.84198 6.05867 6.22833 6.34641 6.46833 6.66382 6.69528 6.89143 7.16420 7.27902 7.31624 7.56587 7.67599 7.74534 7.99391 8.09409 8.45546 9.01198 9.60124 11.07908 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.029310 B = 0.004348 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.060150 B = 6438.321827 C = 6802.254188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.042 0.958 11 C -0.105 4.105 12 C -0.117 4.117 13 C 0.061 3.939 14 N -0.532 5.532 15 C 0.122 3.878 16 C -0.181 4.181 17 S 0.191 5.809 18 C 0.012 3.988 19 N -0.465 5.465 20 C 0.101 3.899 21 Cl -0.007 7.007 22 C 0.069 3.931 23 H 0.260 0.740 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.027 0.973 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.205 0.795 33 H 0.062 0.938 34 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 -17.127 0.831 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.060 0.940 11 C -0.143 4.143 12 C -0.155 4.155 13 C -0.067 4.067 14 N -0.256 5.256 15 C -0.008 4.008 16 C -0.305 4.305 17 S 0.443 5.557 18 C -0.286 4.286 19 N -0.180 5.180 20 C -0.058 4.058 21 Cl 0.021 6.979 22 C -0.058 4.058 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.222 0.778 33 H 0.081 0.919 34 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.903 -17.157 1.662 17.261 hybrid contribution 1.380 1.023 -1.670 2.396 sum 2.283 -16.134 -0.008 16.295 Atomic orbital electron populations 1.69978 1.05898 1.26453 1.50001 1.24914 0.94716 0.98911 0.94995 0.86682 0.80058 0.83918 0.77952 1.20782 1.21310 1.19921 1.21097 0.93981 0.90954 1.49610 0.92796 1.18673 0.94230 0.90148 0.93375 0.93965 1.21604 0.99049 0.94486 0.99202 1.21663 0.98138 0.96186 0.99488 1.22189 0.97526 0.99015 0.87975 1.62103 1.36606 1.01485 1.25455 1.20486 0.92133 0.85738 1.02413 1.25733 1.06600 1.03133 0.94986 1.84172 1.42034 1.17353 1.12136 1.28131 1.04993 1.04029 0.91458 1.65735 1.11688 1.20272 1.20296 1.20337 1.01826 0.94270 0.89402 1.98392 1.83594 1.93488 1.22405 1.22358 0.96130 0.88007 0.99294 0.93047 0.90898 0.94834 0.92059 0.93454 0.95479 0.92172 0.89230 0.92571 0.77829 0.91917 0.95997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.25 12.19 55.43 0.68 -24.57 16 2 C 0.07 1.83 5.22 -17.82 -0.09 1.73 16 3 Si 0.89 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.94 8.48 -34.44 -0.29 -14.23 16 8 H 0.05 1.43 7.77 -52.48 -0.41 1.02 16 9 C 0.05 1.34 2.13 -91.69 -0.19 1.14 16 10 H 0.04 1.16 8.09 -51.93 -0.42 0.74 16 11 C -0.11 -2.44 5.09 -26.61 -0.14 -2.58 16 12 C -0.12 -2.30 6.09 -26.65 -0.16 -2.47 16 13 C 0.06 1.08 4.25 -3.84 -0.02 1.07 16 14 N -0.53 -9.53 4.65 -236.12 -1.10 -10.63 16 15 C 0.12 1.79 5.23 -4.98 -0.03 1.76 16 16 C -0.18 -2.47 5.52 -35.89 -0.20 -2.67 16 17 S 0.19 2.03 23.22 -107.50 -2.50 -0.46 16 18 C 0.01 0.12 12.23 51.60 0.63 0.75 16 19 N -0.47 -6.28 10.55 -12.83 -0.14 -6.42 16 20 C 0.10 1.43 6.31 -19.14 -0.12 1.31 16 21 Cl -0.01 -0.10 26.09 -51.86 -1.35 -1.45 16 22 C 0.07 1.40 4.69 -3.84 -0.02 1.38 16 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 24 H 0.07 1.89 6.99 -51.93 -0.36 1.52 16 25 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.48 8.07 -51.92 -0.42 0.07 16 29 H 0.06 1.03 5.09 -51.93 -0.26 0.76 16 30 H 0.09 1.19 7.99 -51.92 -0.41 0.77 16 31 H 0.06 0.81 7.60 -51.93 -0.39 0.41 16 32 H 0.21 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.06 1.24 8.02 -51.93 -0.42 0.83 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 301.34 15.07 4.54 4.54 Total: -1.00 -29.27 301.34 -9.86 -39.13 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -4.35 Total: -3.35 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.63 Total: -12.79 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.56 Total: -41.62 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.50 Total: -0.46 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.35 Total: -1.45 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.27 -9.86 -39.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721153208.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.825 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds