Wall clock time and date at job start Tue Mar 31 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48499 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47065 * 299.99891 * 3 2 1 6 6 H 1.48503 * 109.46938 * 60.00044 * 3 2 1 7 7 C 1.37880 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.51728 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.27589 * 182.37636 * 10 9 7 12 12 N 1.46847 * 109.51335 * 59.18419 * 11 10 9 13 13 C 1.46899 * 110.99862 * 174.15436 * 12 11 10 14 14 C 1.50705 * 109.46990 * 170.00184 * 13 12 11 15 15 S 1.76194 * 126.03639 * 269.69240 * 14 13 12 16 16 C 1.70977 * 90.29468 * 179.97438 * 15 14 13 17 17 N 1.29051 * 110.17923 * 0.29782 * 16 15 14 18 18 C 1.31812 * 117.12206 * 359.76027 * 17 16 15 19 19 Cl 1.73601 * 122.76431 * 179.97438 * 18 17 16 20 20 C 1.46847 * 111.20163 * 298.24410 * 12 11 10 21 21 C 1.53041 * 109.51486 * 61.75514 * 20 12 11 22 22 H 0.97004 * 119.99580 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.52260 * 300.12099 * 9 7 2 24 24 H 1.09000 * 109.50507 * 62.44301 * 10 9 7 25 25 H 1.08999 * 109.54263 * 302.33234 * 10 9 7 26 26 H 1.09002 * 109.46396 * 179.19729 * 11 10 9 27 27 H 1.08994 * 109.46485 * 299.17654 * 11 10 9 28 28 H 1.09002 * 109.47485 * 289.99621 * 13 12 11 29 29 H 1.08997 * 109.47251 * 50.00559 * 13 12 11 30 30 H 1.07994 * 124.90720 * 180.08206 * 16 15 14 31 31 H 1.09005 * 109.46836 * 301.74653 * 20 12 11 32 32 H 1.08995 * 109.45748 * 181.76188 * 20 12 11 33 33 H 1.08996 * 109.50341 * 180.87808 * 21 20 12 34 34 H 1.08996 * 109.50165 * 60.75338 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2448 -3.6639 0.0005 11 6 1.4749 -4.9852 -0.0594 12 7 0.6532 -5.0194 -1.2760 13 6 0.0068 -6.3285 -1.4380 14 6 -1.0109 -6.2524 -2.5469 15 16 -2.7120 -5.8308 -2.3654 16 6 -2.9473 -6.0188 -4.0484 17 7 -1.8414 -6.3644 -4.6167 18 6 -0.7838 -6.4986 -3.8415 19 17 0.7755 -6.9579 -4.4508 20 6 -0.3407 -3.9383 -1.2761 21 6 0.3751 -2.5858 -1.2525 22 1 -0.4850 0.8401 0.0004 23 1 0.6219 -2.5566 0.8889 24 1 2.8426 -3.6321 0.9114 25 1 2.8994 -3.5846 -0.8674 26 1 2.1801 -5.8162 -0.0739 27 1 0.8312 -5.0704 0.8161 28 1 0.7593 -7.0770 -1.6864 29 1 -0.4892 -6.6064 -0.5081 30 1 -3.8865 -5.8731 -4.5612 31 1 -0.9757 -4.0285 -0.3948 32 1 -0.9539 -4.0090 -2.1744 33 1 -0.3629 -1.7838 -1.2369 34 1 0.9998 -2.4892 -2.1404 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721159134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:57 Heat of formation + Delta-G solvation = 39.398895 kcal Electronic energy + Delta-G solvation = -18437.854894 eV Core-core repulsion = 15523.235944 eV Total energy + Delta-G solvation = -2914.618950 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.060 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.93996 -38.23668 -36.48039 -34.33651 -32.07419 -30.08700 -29.80906 -26.92571 -25.38880 -23.70556 -22.18951 -21.50043 -20.03036 -18.59930 -18.34527 -16.45866 -15.92991 -15.67609 -14.66823 -14.60969 -14.31730 -14.24036 -14.08767 -13.02822 -12.83375 -12.45040 -12.36775 -11.99253 -11.74403 -11.50825 -11.43543 -11.01340 -10.95993 -10.76080 -10.45315 -10.24564 -10.00196 -9.85580 -9.49707 -9.37730 -8.96976 -8.85634 -8.66010 -8.29128 -7.81643 -5.97099 -4.01960 0.47052 0.96281 1.39102 2.26576 2.51607 3.30948 3.39176 3.43340 4.27810 4.43294 4.46865 4.78528 4.90469 5.33448 5.42644 5.58930 5.65604 5.70251 5.82390 6.04782 6.13597 6.26962 6.55973 6.60362 6.83477 7.05346 7.12334 7.33767 7.39875 7.56139 7.60617 7.81282 8.04311 8.14911 8.48648 9.01825 9.62541 11.09246 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.022704 B = 0.004671 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.944134 B = 5992.643206 C = 6345.003122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.525 5.525 13 C 0.127 3.873 14 C -0.194 4.194 15 S 0.168 5.832 16 C 0.023 3.977 17 N -0.466 5.466 18 C 0.121 3.879 19 Cl 0.000 7.000 20 C 0.052 3.948 21 C -0.102 4.102 22 H 0.258 0.742 23 H 0.021 0.979 24 H 0.051 0.949 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.026 0.974 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.206 0.794 31 H 0.024 0.976 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.848 -14.445 -4.459 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.066 4.066 12 N -0.250 5.250 13 C -0.003 4.003 14 C -0.317 4.317 15 S 0.419 5.581 16 C -0.275 4.275 17 N -0.181 5.181 18 C -0.038 4.038 19 Cl 0.028 6.972 20 C -0.076 4.076 21 C -0.140 4.140 22 H 0.068 0.932 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.223 0.777 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.212 -14.108 -4.688 16.112 hybrid contribution 0.680 0.588 0.104 0.905 sum -5.532 -13.519 -4.584 15.310 Atomic orbital electron populations 1.69882 1.05871 1.26171 1.51255 1.24964 0.94833 0.99009 0.95207 0.86585 0.80223 0.84006 0.77485 1.19818 1.21092 1.21151 1.21241 0.92929 0.90614 1.49894 0.92678 1.18693 0.92696 0.91834 0.93887 1.21678 0.98714 0.93483 1.00478 1.22158 0.95750 0.99728 0.89001 1.62235 1.23148 1.00805 1.38825 1.20574 0.92825 0.94531 0.92345 1.25598 0.98701 1.08986 0.98442 1.84299 1.02365 1.62181 1.09209 1.28159 1.00388 1.03175 0.95769 1.65773 0.98240 1.15841 1.38261 1.20298 0.89786 1.05653 0.88096 1.98393 1.20258 1.90301 1.88272 1.22454 0.93266 0.93327 0.98529 1.21645 1.00176 0.92683 0.99478 0.93180 0.96137 0.92988 0.92325 0.92100 0.95554 0.88720 0.93670 0.77710 0.95817 0.92772 0.88917 0.93815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 11.37 55.43 0.63 -24.65 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 7 C -0.51 -13.90 8.57 -34.44 -0.29 -14.19 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.16 2.16 -91.65 -0.20 0.97 16 10 C -0.11 -2.17 5.32 -26.65 -0.14 -2.32 16 11 C 0.06 1.05 5.43 -3.83 -0.02 1.03 16 12 N -0.52 -9.13 4.80 -236.11 -1.13 -10.26 16 13 C 0.13 1.80 5.52 -4.97 -0.03 1.77 16 14 C -0.19 -2.72 4.49 -35.89 -0.16 -2.88 16 15 S 0.17 1.93 21.71 -107.50 -2.33 -0.41 16 16 C 0.02 0.25 12.23 51.59 0.63 0.89 16 17 N -0.47 -6.61 10.55 -12.83 -0.14 -6.74 16 18 C 0.12 1.78 7.30 -19.14 -0.14 1.64 16 19 Cl 0.00 -0.01 28.40 -51.86 -1.47 -1.48 16 20 C 0.05 1.00 4.74 -3.83 -0.02 0.98 16 21 C -0.10 -2.39 5.12 -26.65 -0.14 -2.53 16 22 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 23 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 1.24 7.61 -51.93 -0.40 0.84 16 29 H 0.05 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.21 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 1.01 5.55 -51.93 -0.29 0.72 16 33 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 34 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 302.36 15.07 4.56 4.56 Total: -1.00 -29.46 302.36 -9.86 -39.32 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -4.35 Total: -3.55 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -0.60 Total: -13.07 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: -0.64 Total: -41.65 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.33 Total: -0.41 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.47 Total: -1.48 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.46 -9.86 -39.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721159134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.715 kcal (2) G-P(sol) polarization free energy of solvation -29.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds