Wall clock time and date at job start Tue Mar 31 2020 06:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37667 * 119.95170 * 2 1 4 4 C 1.39826 * 119.90229 * 180.27344 * 3 2 1 5 5 C 1.47415 * 120.09937 * 179.76233 * 4 3 2 6 6 O 1.21541 * 120.00222 * 179.97438 * 5 4 3 7 7 O 1.34775 * 119.99915 * 359.97438 * 5 4 3 8 8 C 1.34862 * 117.00035 * 179.97438 * 7 5 4 9 9 H 1.07996 * 119.99888 * 359.97438 * 8 7 5 10 10 C 1.38794 * 119.99447 * 179.97438 * 8 7 5 11 11 N 1.31431 * 119.99478 * 179.97438 * 10 8 7 12 12 Si 1.86791 * 120.00625 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.47165 * 89.99946 * 12 10 8 14 14 H 1.48506 * 109.47520 * 210.00194 * 12 10 8 15 15 H 1.48501 * 109.47213 * 329.99944 * 12 10 8 16 16 C 1.39828 * 119.81021 * 359.74099 * 4 3 2 17 17 C 1.37676 * 119.89807 * 0.02562 * 16 4 3 18 18 C 1.50706 * 119.94668 * 180.02562 * 17 16 4 19 19 C 1.39020 * 120.10014 * 359.97438 * 17 16 4 20 20 O 1.35699 * 119.90397 * 179.97438 * 19 17 16 21 21 C 1.42905 * 116.99648 * 90.00590 * 20 19 17 22 22 F 1.39897 * 109.46886 * 299.99576 * 21 20 19 23 23 F 1.39898 * 109.47456 * 59.99795 * 21 20 19 24 24 H 1.09002 * 109.47395 * 270.23728 * 1 2 3 25 25 H 1.09005 * 109.47391 * 30.24111 * 1 2 3 26 26 H 1.09001 * 109.47002 * 150.23547 * 1 2 3 27 27 H 1.08001 * 120.05106 * 0.02562 * 3 2 1 28 28 H 0.97001 * 120.00023 * 179.97438 * 11 10 8 29 29 H 1.07995 * 120.05503 * 180.02562 * 16 4 3 30 30 H 1.09001 * 109.47231 * 269.96949 * 18 17 16 31 31 H 1.08992 * 109.47380 * 29.97766 * 18 17 16 32 32 H 1.09004 * 109.46417 * 149.97794 * 18 17 16 33 33 H 1.09001 * 109.47103 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1928 0.0000 4 6 3.5925 1.1916 -0.0058 5 6 4.3329 2.4663 -0.0111 6 8 5.5483 2.4632 -0.0157 7 8 3.6620 3.6353 -0.0109 8 6 4.3994 4.7644 -0.0154 9 1 5.4778 4.7051 -0.0185 10 6 3.7724 6.0026 -0.0160 11 7 4.4910 7.1031 -0.0199 12 14 1.9073 6.1052 -0.0114 13 1 1.4167 6.1349 1.3899 14 1 1.4777 7.3418 -0.7126 15 1 1.3446 4.9205 -0.7078 16 6 4.2866 -0.0222 -0.0061 17 6 3.5912 -1.2104 -0.0012 18 6 4.3382 -2.5193 -0.0009 19 6 2.2010 -1.2046 0.0046 20 8 1.5196 -2.3781 0.0088 21 6 1.1989 -2.9374 1.2842 22 9 2.3784 -3.1851 1.9946 23 9 0.4029 -2.0378 2.0012 24 1 -0.3634 0.0043 1.0277 25 1 -0.3634 0.8878 -0.5176 26 1 -0.3633 -0.8921 -0.5102 27 1 1.6543 2.1281 0.0004 28 1 4.0528 7.9685 -0.0207 29 1 5.3665 -0.0278 -0.0101 30 1 4.5143 -2.8374 -1.0285 31 1 5.2930 -2.3926 0.5091 32 1 3.7471 -3.2748 0.5169 33 1 0.6561 -3.8723 1.1449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730855448.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:15 Heat of formation + Delta-G solvation = -227.276783 kcal Electronic energy + Delta-G solvation = -22654.014727 eV Core-core repulsion = 18700.989549 eV Total energy + Delta-G solvation = -3953.025178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.07690 -48.21469 -41.72149 -40.84601 -38.44533 -37.39845 -34.81062 -34.56117 -32.72445 -28.68335 -28.20857 -27.64121 -26.61729 -24.49609 -22.18267 -21.51526 -20.24933 -19.96932 -19.12594 -18.94036 -18.57176 -17.34389 -17.02145 -16.86464 -16.78072 -15.96625 -15.15984 -15.08487 -14.96150 -14.75586 -14.69715 -14.39556 -14.25867 -14.13932 -13.91749 -13.86163 -13.47923 -13.40835 -13.13201 -12.83773 -12.75602 -12.57404 -12.37329 -12.33314 -11.92260 -11.72313 -11.32825 -10.89653 -9.86063 -9.81191 -8.61909 -6.47140 -0.63292 0.12945 1.23885 1.30328 1.44039 1.51642 1.99988 2.18527 2.26448 2.57076 2.71033 2.90085 3.55400 3.56727 3.75117 3.75226 3.95815 4.04396 4.20253 4.23232 4.50909 4.58186 4.71689 4.75452 4.78685 5.06809 5.12435 5.18868 5.24487 5.27405 5.30154 5.40522 5.81366 5.98048 6.39493 6.72302 7.45151 8.50596 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.024471 B = 0.004769 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.947163 B = 5870.272942 C = 6690.562634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.089 4.089 3 C -0.078 4.078 4 C -0.103 4.103 5 C 0.447 3.553 6 O -0.570 6.570 7 O -0.243 6.243 8 C -0.409 4.409 9 H 0.059 0.941 10 C 0.020 3.980 11 N -0.909 5.909 12 Si 0.980 3.020 13 H -0.257 1.257 14 H -0.261 1.261 15 H -0.246 1.246 16 C -0.071 4.071 17 C -0.088 4.088 18 C -0.116 4.116 19 C 0.086 3.914 20 O -0.324 6.324 21 C 0.399 3.601 22 F -0.212 7.212 23 F -0.213 7.213 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.141 0.859 28 H 0.292 0.708 29 H 0.137 0.863 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.857 -23.769 1.233 27.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 C -0.097 4.097 4 C -0.105 4.105 5 C 0.296 3.704 6 O -0.468 6.468 7 O -0.152 6.152 8 C -0.485 4.485 9 H 0.077 0.923 10 C -0.181 4.181 11 N -0.548 5.548 12 Si 0.798 3.202 13 H -0.181 1.181 14 H -0.185 1.185 15 H -0.169 1.169 16 C -0.089 4.089 17 C -0.088 4.088 18 C -0.172 4.172 19 C 0.043 3.957 20 O -0.243 6.243 21 C 0.311 3.689 22 F -0.194 7.194 23 F -0.195 7.195 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.159 0.841 28 H 0.102 0.898 29 H 0.155 0.845 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -13.586 -23.606 1.120 27.260 hybrid contribution 0.576 1.130 0.290 1.301 sum -13.010 -22.476 1.410 26.009 Atomic orbital electron populations 1.20876 0.87500 1.04552 1.03807 1.20342 0.98790 0.90843 0.98965 1.21330 0.91952 0.99215 0.97179 1.19280 0.94303 0.89836 1.07047 1.21470 0.86254 0.85263 0.77386 1.90646 1.16580 1.88311 1.51265 1.83539 1.40135 1.13923 1.77584 1.20393 0.91489 0.82009 1.54592 0.92325 1.25602 1.06531 0.92198 0.93816 1.69685 1.39445 0.98710 1.46935 0.85142 0.75493 0.79440 0.80115 1.18143 1.18516 1.16940 1.21040 1.00799 0.89609 0.97489 1.20274 0.92845 0.96541 0.99155 1.20974 1.00221 0.91961 1.04042 1.18444 0.89380 0.84845 1.03036 1.86542 1.73276 1.35457 1.29069 1.24577 0.77870 0.92030 0.74416 1.93026 1.51846 1.94430 1.80094 1.93069 1.74174 1.72429 1.79779 0.89695 0.90171 0.89281 0.84130 0.89750 0.84545 0.89257 0.90586 0.89170 0.74982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 8.81 71.23 0.63 -1.56 16 2 C -0.09 -2.40 5.73 -19.81 -0.11 -2.52 16 3 C -0.08 -2.66 9.25 22.52 0.21 -2.46 16 4 C -0.10 -4.16 5.87 -20.09 -0.12 -4.28 16 5 C 0.45 23.31 7.83 70.24 0.55 23.86 16 6 O -0.57 -33.39 15.59 19.70 0.31 -33.08 16 7 O -0.24 -13.56 7.81 10.83 0.08 -13.48 16 8 C -0.41 -25.85 10.11 67.95 0.69 -25.16 16 9 H 0.06 4.20 7.09 -2.91 -0.02 4.18 16 10 C 0.02 1.15 5.49 84.89 0.47 1.61 16 11 N -0.91 -55.13 13.96 21.63 0.30 -54.83 16 12 Si 0.98 43.34 28.62 68.60 1.96 45.30 16 13 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 14 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 15 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 16 C -0.07 -2.43 9.23 22.52 0.21 -2.22 16 17 C -0.09 -2.37 5.73 -19.81 -0.11 -2.49 16 18 C -0.12 -2.28 9.61 71.24 0.68 -1.60 16 19 C 0.09 2.17 5.29 22.65 0.12 2.29 16 20 O -0.32 -5.87 8.63 -90.19 -0.78 -6.65 16 21 C 0.40 5.04 6.29 113.37 0.71 5.76 16 22 F -0.21 -3.63 14.54 44.97 0.65 -2.98 16 23 F -0.21 -3.65 15.22 44.97 0.68 -2.97 16 24 H 0.08 1.57 7.31 -2.39 -0.02 1.55 16 25 H 0.08 1.48 8.08 -2.38 -0.02 1.46 16 26 H 0.09 1.44 7.52 -2.39 -0.02 1.42 16 27 H 0.14 4.78 7.60 -2.91 -0.02 4.76 16 28 H 0.29 15.86 8.31 -92.71 -0.77 15.09 16 29 H 0.14 4.74 7.64 -2.91 -0.02 4.72 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 32 H 0.09 1.53 5.05 -2.38 -0.01 1.52 16 33 H 0.23 0.11 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -77.61 297.92 8.30 -69.31 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 1.16 Total: 8.12 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 3.92 Total: -8.75 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.30 Total: -54.83 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.39 Total: -53.20 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 1.34 Total: -5.95 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.96 Total: 45.30 kcal Total: -77.61 8.30 -69.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730855448.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.967 kcal (2) G-P(sol) polarization free energy of solvation -77.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds