Wall clock time and date at job start Tue Mar 31 2020 06:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47289 * 2 1 4 4 N 1.29948 * 126.29045 * 89.96852 * 3 2 1 5 5 O 1.21297 * 110.25402 * 179.97438 * 4 3 2 6 6 C 1.33644 * 109.80913 * 0.02562 * 5 4 3 7 7 C 1.50702 * 126.54815 * 179.73250 * 6 5 4 8 8 H 1.09008 * 109.47197 * 195.02783 * 7 6 5 9 9 C 1.52994 * 109.47335 * 75.02999 * 7 6 5 10 10 O 1.45204 * 109.47407 * 315.02624 * 7 6 5 11 11 C 1.34231 * 117.00085 * 210.00084 * 10 7 6 12 12 O 1.20827 * 119.99896 * 359.97438 * 11 10 7 13 13 C 1.50699 * 119.99826 * 180.02562 * 11 10 7 14 14 S 1.81000 * 109.46853 * 180.02562 * 13 11 10 15 15 C 1.76205 * 99.99858 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99765 * 0.02562 * 15 14 13 17 17 C 1.38799 * 120.00027 * 179.97438 * 15 14 13 18 18 N 1.31626 * 119.99916 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00004 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.47013 * 89.99822 * 19 17 15 21 21 H 1.48501 * 109.47420 * 209.99828 * 19 17 15 22 22 H 1.48497 * 109.47355 * 330.00191 * 19 17 15 23 23 N 1.31126 * 106.89983 * 0.02562 * 6 5 4 24 24 H 1.09003 * 109.46804 * 60.00280 * 1 2 3 25 25 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47385 * 300.00564 * 1 2 3 27 27 H 1.08999 * 109.47385 * 239.99436 * 2 1 3 28 28 H 1.09003 * 109.46804 * 119.99720 * 2 1 3 29 29 H 1.08993 * 109.47785 * 179.97438 * 9 7 6 30 30 H 1.08999 * 109.46971 * 299.99943 * 9 7 6 31 31 H 1.09002 * 109.47515 * 59.99745 * 9 7 6 32 32 H 1.09000 * 109.46948 * 300.00061 * 13 11 10 33 33 H 1.08993 * 109.47562 * 60.00061 * 13 11 10 34 34 H 0.97003 * 119.99719 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2882 2.1461 1.0474 5 8 2.6775 3.2449 0.7123 6 6 2.7073 3.3276 -0.6212 7 6 3.1253 4.5238 -1.4370 8 1 2.7980 4.3925 -2.4685 9 6 4.6486 4.6601 -1.3989 10 8 2.5181 5.7220 -0.8855 11 6 2.2465 6.7179 -1.7435 12 8 2.5079 6.5928 -2.9165 13 6 1.6167 7.9924 -1.2436 14 16 1.3770 9.1310 -2.6300 15 6 0.6478 10.4939 -1.7840 16 1 0.4823 10.4418 -0.7181 17 6 0.2871 11.6348 -2.4874 18 7 -0.2571 12.6531 -1.8553 19 14 0.5754 11.7258 -4.3307 20 1 -0.6198 11.2088 -5.0448 21 1 0.8156 13.1371 -4.7252 22 1 1.7593 10.9036 -4.6878 23 7 2.2974 2.1713 -1.0841 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.9510 5.5250 -1.9893 30 1 4.9759 4.7915 -0.3675 31 1 5.1045 3.7607 -1.8130 32 1 0.6524 7.7668 -0.7882 33 1 2.2693 8.4539 -0.5026 34 1 -0.5089 13.4506 -2.3468 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744694254.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:32 Heat of formation + Delta-G solvation = -44.216192 kcal Electronic energy + Delta-G solvation = -19579.576779 eV Core-core repulsion = 16220.622841 eV Total energy + Delta-G solvation = -3358.953937 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.84036 -41.82453 -38.16719 -37.55407 -35.36451 -34.68187 -33.40020 -31.89799 -31.01432 -27.89156 -26.30172 -26.19195 -24.17662 -23.08337 -21.60625 -20.01712 -19.33460 -19.10257 -18.60956 -17.71493 -17.50673 -17.10218 -16.13493 -16.03128 -15.75950 -15.16746 -15.05365 -14.91852 -14.47468 -14.09899 -13.86890 -13.77559 -13.35625 -13.35001 -13.01751 -12.79550 -12.73839 -12.70198 -12.61783 -12.38194 -12.15400 -12.02572 -11.91087 -11.74091 -11.17880 -11.16876 -10.62864 -9.05352 -8.51543 -6.25187 -0.24831 0.64301 0.94021 0.98966 1.28523 1.33741 1.47274 1.51124 1.71613 2.24287 2.44742 2.65735 2.86910 2.87741 3.45179 3.57683 3.65395 3.86428 4.10574 4.14539 4.18530 4.22460 4.40865 4.52160 4.58735 4.63232 4.76092 4.88394 4.96641 4.99889 5.06891 5.21270 5.70569 6.13077 6.45830 6.90239 6.92350 8.60790 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.003120 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.855426 B = 8972.274764 C = 9190.338367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C 0.172 3.828 4 N -0.398 5.398 5 O 0.084 5.916 6 C 0.189 3.811 7 C 0.181 3.819 8 H 0.132 0.868 9 C -0.163 4.163 10 O -0.343 6.343 11 C 0.499 3.501 12 O -0.501 6.501 13 C -0.092 4.092 14 S -0.154 6.154 15 C -0.533 4.533 16 H 0.065 0.935 17 C 0.046 3.954 18 N -0.916 5.916 19 Si 0.914 3.086 20 H -0.262 1.262 21 H -0.260 1.260 22 H -0.230 1.230 23 N -0.479 5.479 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.048 0.952 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.125 0.875 33 H 0.132 0.868 34 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.461 -24.152 2.550 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.101 4.101 4 N -0.106 5.106 5 O 0.027 5.973 6 C -0.032 4.032 7 C 0.124 3.876 8 H 0.149 0.851 9 C -0.221 4.221 10 O -0.260 6.260 11 C 0.340 3.660 12 O -0.388 6.388 13 C -0.240 4.240 14 S 0.072 5.928 15 C -0.680 4.680 16 H 0.083 0.917 17 C -0.160 4.160 18 N -0.554 5.554 19 Si 0.735 3.265 20 H -0.187 1.187 21 H -0.185 1.185 22 H -0.154 1.154 23 N -0.215 5.215 24 H 0.069 0.931 25 H 0.117 0.883 26 H 0.067 0.933 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.522 -24.739 1.623 25.908 hybrid contribution -0.535 1.001 0.845 1.415 sum 6.988 -23.738 2.468 24.868 Atomic orbital electron populations 1.21745 0.92627 1.04283 1.01735 1.20229 0.97250 0.83293 1.06417 1.26676 0.99191 1.01729 0.82496 1.74659 1.18230 0.93088 1.24619 1.85334 1.60286 1.27164 1.24497 1.28348 0.96201 0.96402 0.82255 1.21038 0.96129 0.75366 0.95086 0.85067 1.22283 0.88615 1.05696 1.05492 1.86584 1.73491 1.24550 1.41396 1.22849 0.74745 0.84189 0.84177 1.90689 1.49417 1.80195 1.18494 1.22969 1.05737 0.92038 1.03255 1.84601 1.81484 1.13416 1.13266 1.22424 1.46661 1.01682 0.97247 0.91671 1.25577 0.93040 0.93972 1.03387 1.70016 1.40711 1.05973 1.38653 0.85879 0.81370 0.79606 0.79601 1.18682 1.18480 1.15371 1.71900 1.17244 1.02193 1.30153 0.93074 0.88303 0.93309 0.86808 0.87264 0.89403 0.89492 0.87799 0.85729 0.84981 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 71.98 0.71 -1.08 16 2 C -0.03 -0.44 6.56 29.85 0.20 -0.24 16 3 C 0.17 3.74 7.47 138.46 1.03 4.77 16 4 N -0.40 -9.90 12.16 -60.32 -0.73 -10.64 16 5 O 0.08 2.12 11.31 74.84 0.85 2.97 16 6 C 0.19 4.44 7.41 88.38 0.65 5.10 16 7 C 0.18 3.99 3.11 29.85 0.09 4.09 16 8 H 0.13 2.99 7.16 -2.38 -0.02 2.98 16 9 C -0.16 -2.65 9.53 71.98 0.69 -1.97 16 10 O -0.34 -9.11 9.86 -50.56 -0.50 -9.61 16 11 C 0.50 15.86 7.95 71.24 0.57 16.43 16 12 O -0.50 -18.04 15.08 21.96 0.33 -17.71 16 13 C -0.09 -3.26 6.27 71.24 0.45 -2.81 16 14 S -0.15 -7.21 18.55 -56.49 -1.05 -8.26 16 15 C -0.53 -29.70 10.04 67.95 0.68 -29.02 16 16 H 0.07 3.86 8.03 -2.91 -0.02 3.84 16 17 C 0.05 2.61 5.50 84.86 0.47 3.07 16 18 N -0.92 -54.48 13.97 21.65 0.30 -54.18 16 19 Si 0.91 42.83 27.74 68.60 1.90 44.73 16 20 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 22 H -0.23 -10.51 6.74 99.48 0.67 -9.84 16 23 N -0.48 -11.45 11.55 -303.20 -3.50 -14.95 16 24 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.10 0.70 8.14 -2.38 -0.02 0.69 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.12 4.16 8.14 -2.40 -0.02 4.14 16 33 H 0.13 4.27 8.14 -2.40 -0.02 4.25 16 34 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -67.52 319.82 4.22 -63.30 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.08 Total: 6.02 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 5.54 Total: -1.67 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -3.93 Total: -79.77 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: 0.68 Total: -24.35 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.90 Total: 44.73 kcal Atomic # 16 Polarization: -7.21 SS G_CDS: -1.05 Total: -8.26 kcal Total: -67.52 4.22 -63.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744694254.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.086 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds