Wall clock time and date at job start Tue Mar 31 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86800 * 120.00370 * 2 1 4 4 H 1.48502 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47039 * 299.99919 * 3 2 1 6 6 H 1.48503 * 109.46830 * 59.99835 * 3 2 1 7 7 C 1.40251 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99983 * 197.01794 * 7 2 1 9 9 C 1.41083 * 119.99824 * 17.00978 * 7 2 1 10 10 C 1.40898 * 120.09900 * 205.37818 * 9 7 2 11 11 C 1.36296 * 119.90123 * 180.02562 * 10 9 7 12 12 C 1.40079 * 120.09720 * 0.02562 * 11 10 9 13 13 C 1.47487 * 119.90238 * 179.97438 * 12 11 10 14 14 O 1.21530 * 119.99611 * 0.02562 * 13 12 11 15 15 O 1.34769 * 120.00490 * 180.02562 * 13 12 11 16 16 C 1.35936 * 117.00492 * 175.27136 * 15 13 12 17 17 C 1.38727 * 120.02813 * 263.68060 * 16 15 13 18 18 C 1.38139 * 119.96448 * 179.76672 * 17 16 15 19 19 C 1.38469 * 120.03338 * 0.50686 * 18 17 16 20 20 F 1.35091 * 119.97188 * 179.72083 * 19 18 17 21 21 C 1.38477 * 120.05922 * 359.74539 * 19 18 17 22 22 C 1.38133 * 120.02940 * 0.02562 * 21 19 18 23 23 C 1.40075 * 120.19671 * 0.27338 * 12 11 10 24 24 C 1.36289 * 120.10151 * 359.43894 * 23 12 11 25 25 H 0.97009 * 119.99993 * 0.02562 * 1 2 3 26 26 H 1.08003 * 120.05601 * 0.02562 * 10 9 7 27 27 H 1.07996 * 119.95554 * 179.97438 * 11 10 9 28 28 H 1.07996 * 120.02371 * 359.97438 * 17 16 15 29 29 H 1.08000 * 119.98364 * 180.22938 * 18 17 16 30 30 H 1.08001 * 119.97933 * 179.97438 * 21 19 18 31 31 H 1.08000 * 120.00748 * 179.97438 * 22 21 19 32 32 H 1.08008 * 119.94677 * 179.72443 * 23 12 11 33 33 H 1.08010 * 120.05248 * 180.25114 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 -0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8816 2.3964 1.2125 7 6 2.0075 -1.2146 -0.0005 8 1 3.0520 -1.2352 0.2732 9 6 1.3484 -2.4095 -0.3585 10 6 1.8188 -3.6474 0.1226 11 6 1.1792 -4.7994 -0.2262 12 6 0.0561 -4.7538 -1.0621 13 6 -0.6323 -6.0030 -1.4373 14 8 -0.2253 -7.0698 -1.0209 15 8 -1.7128 -5.9617 -2.2418 16 6 -2.2402 -7.1533 -2.6287 17 6 -1.8896 -7.7029 -3.8532 18 6 -2.4227 -8.9162 -4.2429 19 6 -3.3147 -9.5788 -3.4166 20 9 -3.8396 -10.7625 -3.8015 21 6 -3.6696 -9.0287 -2.1963 22 6 -3.1344 -7.8178 -1.8020 23 6 -0.4113 -3.5259 -1.5478 24 6 0.2185 -2.3686 -1.1994 25 1 -0.4850 0.8401 -0.0004 26 1 2.6849 -3.6836 0.7668 27 1 1.5393 -5.7487 0.1417 28 1 -1.1976 -7.1842 -4.5000 29 1 -2.1470 -9.3462 -5.1945 30 1 -4.3658 -9.5464 -1.5531 31 1 -3.4118 -7.3890 -0.8504 32 1 -1.2750 -3.4959 -2.1957 33 1 -0.1451 -1.4219 -1.5712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758143335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:28 Heat of formation + Delta-G solvation = -95.212319 kcal Electronic energy + Delta-G solvation = -20560.654414 eV Core-core repulsion = 17044.125206 eV Total energy + Delta-G solvation = -3516.529208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.079 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.99594 -42.15848 -39.87683 -39.01110 -37.49610 -35.76769 -32.35016 -32.33641 -31.40078 -30.69823 -28.02980 -25.07591 -24.30951 -23.28769 -22.80774 -21.75500 -19.41926 -19.19843 -18.69589 -18.43640 -18.03997 -17.22971 -16.66884 -16.22189 -15.99853 -15.78829 -15.41710 -15.15074 -14.70042 -14.62168 -14.48114 -14.10844 -13.93182 -13.73677 -13.31638 -13.13481 -12.88453 -12.82995 -12.64293 -12.42292 -11.83912 -11.75331 -11.46569 -11.38505 -11.16657 -10.28216 -9.69360 -9.65434 -9.55017 -8.86112 -6.57182 -0.22650 0.07222 0.17228 1.12449 1.34356 1.41773 1.57138 1.77731 1.83366 2.15088 2.55601 2.65514 3.11112 3.59586 3.64066 3.71140 3.93101 4.13358 4.22476 4.33933 4.39446 4.68527 4.77005 4.91698 4.94169 4.95189 4.98002 5.09029 5.19786 5.21276 5.37735 5.54253 5.74690 5.77819 5.91837 5.94850 6.13235 6.47667 6.68575 6.79902 7.00136 8.08530 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.047080 B = 0.002979 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.591076 B = 9395.506697 C = 9623.995334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.263 1.263 7 C -0.455 4.455 8 H 0.094 0.906 9 C 0.106 3.894 10 C -0.248 4.248 11 C -0.020 4.020 12 C -0.290 4.290 13 C 0.519 3.481 14 O -0.554 6.554 15 O -0.300 6.300 16 C 0.052 3.948 17 C -0.100 4.100 18 C -0.132 4.132 19 C 0.091 3.909 20 F -0.136 7.136 21 C -0.134 4.134 22 C -0.104 4.104 23 C -0.039 4.039 24 C -0.200 4.200 25 H 0.300 0.700 26 H 0.115 0.885 27 H 0.112 0.888 28 H 0.151 0.849 29 H 0.172 0.828 30 H 0.167 0.833 31 H 0.141 0.859 32 H 0.118 0.882 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.073 -7.203 -5.827 10.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.188 1.188 7 C -0.481 4.481 8 H 0.112 0.888 9 C 0.102 3.898 10 C -0.267 4.267 11 C -0.039 4.039 12 C -0.293 4.293 13 C 0.373 3.627 14 O -0.447 6.447 15 O -0.216 6.216 16 C 0.011 3.989 17 C -0.119 4.119 18 C -0.150 4.150 19 C 0.071 3.929 20 F -0.115 7.115 21 C -0.152 4.152 22 C -0.122 4.122 23 C -0.058 4.058 24 C -0.220 4.220 25 H 0.112 0.888 26 H 0.133 0.867 27 H 0.130 0.870 28 H 0.169 0.831 29 H 0.189 0.811 30 H 0.185 0.815 31 H 0.159 0.841 32 H 0.136 0.864 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.219 -7.421 -5.698 10.714 hybrid contribution 0.055 0.399 0.173 0.439 sum -5.164 -7.022 -5.525 10.320 Atomic orbital electron populations 1.69758 1.09441 1.32031 1.29948 1.27042 0.95562 1.05163 0.90769 0.85004 0.79543 0.75128 0.79276 1.17667 1.18545 1.18773 1.20303 0.98712 0.91840 1.37206 0.88777 1.18209 0.90938 0.93195 0.87435 1.20874 1.05249 0.92293 1.08294 1.20501 0.92444 0.97726 0.93216 1.18334 1.04774 0.89594 1.16556 1.21725 0.76717 0.89763 0.74497 1.90715 1.65878 1.32919 1.55178 1.84704 1.43322 1.31086 1.62461 1.19039 0.97315 0.87130 0.95422 1.21319 0.99709 0.95076 0.95772 1.21255 0.97387 0.94609 1.01773 1.17836 0.97026 0.82994 0.95009 1.91505 1.84949 1.43899 1.91136 1.21222 1.02272 0.95653 0.96103 1.21342 0.96433 0.94596 0.99866 1.20782 0.97280 0.91489 0.96247 1.21014 1.00693 0.97160 1.03095 0.88835 0.86680 0.86989 0.83145 0.81096 0.81506 0.84143 0.86384 0.86736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.41 10.95 21.88 0.24 -36.17 16 2 C 0.04 1.55 5.15 85.36 0.44 1.99 16 3 Si 0.99 32.89 29.59 68.60 2.03 34.92 16 4 H -0.25 -8.24 7.11 99.48 0.71 -7.53 16 5 H -0.26 -8.35 7.11 99.48 0.71 -7.64 16 6 H -0.26 -8.40 7.11 99.48 0.71 -7.70 16 7 C -0.45 -21.71 9.04 23.46 0.21 -21.50 16 8 H 0.09 4.24 7.91 -2.91 -0.02 4.22 16 9 C 0.11 5.28 5.57 -21.28 -0.12 5.16 16 10 C -0.25 -11.63 9.73 22.47 0.22 -11.41 16 11 C -0.02 -0.93 9.52 22.26 0.21 -0.72 16 12 C -0.29 -13.34 5.89 -19.95 -0.12 -13.46 16 13 C 0.52 22.46 7.82 70.26 0.55 23.01 16 14 O -0.55 -25.49 16.07 19.74 0.32 -25.18 16 15 O -0.30 -11.45 9.24 -0.64 -0.01 -11.46 16 16 C 0.05 1.69 4.96 22.50 0.11 1.80 16 17 C -0.10 -2.68 9.99 22.36 0.22 -2.45 16 18 C -0.13 -2.87 10.02 22.30 0.22 -2.64 16 19 C 0.09 2.05 7.30 22.38 0.16 2.22 16 20 F -0.14 -2.98 17.26 44.97 0.78 -2.20 16 21 C -0.13 -3.05 10.02 22.30 0.22 -2.83 16 22 C -0.10 -2.93 9.92 22.36 0.22 -2.70 16 23 C -0.04 -1.79 9.55 22.26 0.21 -1.58 16 24 C -0.20 -9.83 8.63 22.47 0.19 -9.63 16 25 H 0.30 12.22 8.29 -92.70 -0.77 11.45 16 26 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 27 H 0.11 4.85 7.63 -2.91 -0.02 4.82 16 28 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 29 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 30 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 32 H 0.12 4.88 7.59 -2.91 -0.02 4.86 16 33 H 0.11 5.70 6.18 -2.91 -0.02 5.68 16 Total: -1.00 -56.56 305.43 7.48 -49.08 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 1.15 Total: 25.76 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 2.97 Total: -34.75 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.24 Total: -36.17 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: 0.31 Total: -36.64 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 32.89 SS G_CDS: 2.03 Total: 34.92 kcal Total: -56.56 7.48 -49.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758143335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.131 kcal (2) G-P(sol) polarization free energy of solvation -56.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds