Wall clock time and date at job start Tue Mar 31 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86802 * 119.99437 * 2 1 4 4 H 1.48497 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99654 * 3 2 1 6 6 H 1.48499 * 109.47326 * 59.99514 * 3 2 1 7 7 C 1.40242 * 120.00625 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00199 * 198.00629 * 7 2 1 9 9 C 1.41084 * 119.99753 * 18.00550 * 7 2 1 10 10 C 1.40903 * 120.09632 * 25.32504 * 9 7 2 11 11 C 1.36301 * 119.89303 * 180.24909 * 10 9 7 12 12 C 1.40074 * 120.10060 * 359.48139 * 11 10 9 13 13 C 1.47485 * 119.89857 * 180.27377 * 12 11 10 14 14 O 1.21519 * 120.00139 * 0.02562 * 13 12 11 15 15 O 1.34787 * 119.99937 * 180.02562 * 13 12 11 16 16 C 1.35899 * 117.00137 * 175.21729 * 15 13 12 17 17 C 1.38784 * 120.04751 * 264.52770 * 16 15 13 18 18 C 1.38126 * 119.99677 * 179.74633 * 17 16 15 19 19 C 1.38255 * 120.07740 * 0.52917 * 18 17 16 20 20 C 1.38477 * 120.09286 * 359.74215 * 19 18 17 21 21 F 1.35103 * 120.00229 * 180.02562 * 20 19 18 22 22 C 1.38382 * 120.00276 * 359.97438 * 20 19 18 23 23 C 1.40078 * 120.19721 * 0.25175 * 12 11 10 24 24 C 1.36291 * 120.10478 * 0.02562 * 23 12 11 25 25 H 0.97003 * 120.00953 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.05599 * 0.02791 * 10 9 7 27 27 H 1.08001 * 119.94723 * 179.75582 * 11 10 9 28 28 H 1.08003 * 119.99738 * 0.02562 * 17 16 15 29 29 H 1.07996 * 119.96470 * 180.27216 * 18 17 16 30 30 H 1.08006 * 119.95825 * 179.72638 * 19 18 17 31 31 H 1.08001 * 120.03907 * 180.02562 * 22 20 19 32 32 H 1.08003 * 119.94527 * 180.02562 * 23 12 11 33 33 H 1.07998 * 120.05323 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7002 1.3466 -0.0006 5 1 1.8814 2.3965 -1.2126 6 1 1.8813 2.3966 1.2124 7 6 2.0077 -1.2145 0.0005 8 1 3.0480 -1.2372 0.2897 9 6 1.3541 -2.4066 -0.3766 10 6 0.2355 -2.3589 -1.2320 11 6 -0.3958 -3.5127 -1.5896 12 6 0.0724 -4.7453 -1.1169 13 6 -0.6104 -5.9916 -1.5116 14 8 -1.5775 -5.9481 -2.2462 15 8 -0.1619 -7.1787 -1.0575 16 6 -0.8941 -8.2781 -1.3768 17 6 -1.8379 -8.7676 -0.4848 18 6 -2.5853 -9.8820 -0.8127 19 6 -2.3868 -10.5174 -2.0244 20 6 -1.4421 -10.0353 -2.9147 21 9 -1.2500 -10.6574 -4.0985 22 6 -0.6954 -8.9157 -2.5924 23 6 1.1876 -4.7979 -0.2708 24 6 1.8217 -3.6487 0.0965 25 1 -0.4852 0.8400 -0.0004 26 1 -0.1233 -1.4094 -1.6008 27 1 -1.2558 -3.4769 -2.2421 28 1 -1.9911 -8.2745 0.4638 29 1 -3.3227 -10.2598 -0.1200 30 1 -2.9692 -11.3913 -2.2769 31 1 0.0412 -8.5389 -3.2865 32 1 1.5455 -5.7505 0.0909 33 1 2.6817 -3.6902 0.7485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758144503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:35 Heat of formation + Delta-G solvation = -84.927313 kcal Electronic energy + Delta-G solvation = -20614.704725 eV Core-core repulsion = 17098.621509 eV Total energy + Delta-G solvation = -3516.083217 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.079 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.98058 -40.73360 -38.46376 -37.45210 -35.98494 -34.05578 -30.93190 -30.53790 -29.98557 -29.55895 -26.36965 -23.77075 -22.89597 -21.95712 -21.12361 -20.13378 -18.11763 -17.62650 -17.05693 -16.82634 -16.40512 -15.89307 -15.65157 -15.48054 -14.82717 -14.20857 -14.02243 -13.78961 -13.41999 -13.29216 -12.88972 -12.32282 -12.29147 -12.14701 -11.96225 -11.65101 -11.46813 -11.34190 -11.08345 -10.80537 -10.62675 -10.22283 -9.80424 -9.63901 -9.48170 -9.03728 -8.71290 -7.84872 -7.74582 -7.18415 -4.76674 0.93394 1.06754 1.90736 2.79100 2.88384 2.93912 2.94701 3.06788 3.47288 3.64531 3.70101 4.19277 4.37037 4.69629 4.81987 4.97990 5.14832 5.28261 5.41852 5.83714 5.92346 5.99038 6.11379 6.14867 6.16843 6.25219 6.62079 6.65993 6.73564 6.92916 6.95888 7.06428 7.32120 7.50693 7.69643 7.76854 7.91554 8.26784 8.47155 8.58171 8.61936 9.73037 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.046296 B = 0.003007 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.661638 B = 9309.582584 C = 9332.024360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.430 4.430 8 H 0.089 0.911 9 C 0.132 3.868 10 C -0.183 4.183 11 C -0.030 4.030 12 C -0.276 4.276 13 C 0.513 3.487 14 O -0.532 6.532 15 O -0.302 6.302 16 C 0.135 3.865 17 C -0.135 4.135 18 C -0.078 4.078 19 C -0.161 4.161 20 C 0.111 3.889 21 F -0.138 7.138 22 C -0.160 4.160 23 C -0.027 4.027 24 C -0.238 4.238 25 H 0.290 0.710 26 H 0.123 0.877 27 H 0.103 0.897 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.103 0.897 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 -10.742 -0.136 10.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.151 4.151 3 Si 0.739 3.261 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.457 4.457 8 H 0.107 0.893 9 C 0.128 3.872 10 C -0.202 4.202 11 C -0.049 4.049 12 C -0.278 4.278 13 C 0.367 3.633 14 O -0.423 6.423 15 O -0.219 6.219 16 C 0.093 3.907 17 C -0.154 4.154 18 C -0.096 4.096 19 C -0.180 4.180 20 C 0.092 3.908 21 F -0.117 7.117 22 C -0.180 4.180 23 C -0.046 4.046 24 C -0.257 4.257 25 H 0.101 0.899 26 H 0.141 0.859 27 H 0.121 0.879 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.122 0.878 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.328 -10.590 -0.398 10.850 hybrid contribution 0.252 0.568 -0.227 0.662 sum -2.076 -10.021 -0.625 10.253 Atomic orbital electron populations 1.69738 1.08058 1.30503 1.29890 1.26191 0.94868 1.02221 0.91844 0.86114 0.81088 0.79834 0.79055 1.17897 1.19198 1.19490 1.19998 0.98567 0.91146 1.35946 0.89262 1.17868 0.90162 0.92284 0.86859 1.20956 1.00173 0.96824 1.02270 1.20446 0.97098 0.91048 0.96314 1.18103 1.05308 0.88057 1.16361 1.21990 0.82036 0.82161 0.77132 1.90753 1.28247 1.86469 1.36800 1.84716 1.51109 1.14252 1.71856 1.18255 0.92273 0.87596 0.92626 1.21391 0.94984 0.98113 1.00872 1.20837 0.98452 0.94460 0.95840 1.21149 0.99708 1.02364 0.94778 1.17384 0.97881 0.93117 0.82444 1.91503 1.94381 1.81500 1.44273 1.21302 1.02238 0.96684 0.97745 1.20557 0.92969 0.97397 0.93648 1.20727 1.04728 0.92562 1.07689 0.89861 0.85945 0.87937 0.84463 0.84287 0.84473 0.84174 0.87843 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.69 11.01 55.56 0.61 -17.07 16 2 C 0.07 1.61 5.13 -17.31 -0.09 1.52 16 3 Si 0.92 16.51 29.60 -169.99 -5.03 11.48 16 4 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 6 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.43 -10.20 9.04 -37.75 -0.34 -10.54 16 8 H 0.09 2.00 7.91 -52.48 -0.42 1.58 16 9 C 0.13 3.23 5.57 -106.80 -0.59 2.64 16 10 C -0.18 -4.50 8.63 -39.27 -0.34 -4.84 16 11 C -0.03 -0.72 9.52 -39.59 -0.38 -1.09 16 12 C -0.28 -6.31 5.89 -104.75 -0.62 -6.93 16 13 C 0.51 11.20 7.83 34.50 0.27 11.47 16 14 O -0.53 -12.54 16.08 -19.28 -0.31 -12.85 16 15 O -0.30 -5.79 9.24 -24.92 -0.23 -6.02 16 16 C 0.13 2.25 4.94 -39.21 -0.19 2.06 16 17 C -0.14 -1.87 9.99 -39.42 -0.39 -2.27 16 18 C -0.08 -0.86 10.04 -39.62 -0.40 -1.26 16 19 C -0.16 -1.83 10.02 -39.49 -0.40 -2.23 16 20 C 0.11 1.53 7.30 -39.44 -0.29 1.24 16 21 F -0.14 -1.89 17.27 2.25 0.04 -1.85 16 22 C -0.16 -2.50 9.93 -39.36 -0.39 -2.89 16 23 C -0.03 -0.59 9.55 -39.59 -0.38 -0.96 16 24 C -0.24 -5.38 9.73 -39.27 -0.38 -5.77 16 25 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 26 H 0.12 3.05 6.21 -52.49 -0.33 2.72 16 27 H 0.10 2.36 7.63 -52.49 -0.40 1.96 16 28 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 29 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.14 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.10 1.99 7.59 -52.48 -0.40 1.59 16 33 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -26.87 305.54 -8.01 -34.88 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -2.79 Total: 6.67 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -4.91 Total: -19.85 kcal Atomic # 7 Polarization: -17.69 SS G_CDS: 0.61 Total: -17.07 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.54 Total: -18.86 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.48 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.87 -8.01 -34.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758144503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.043 kcal (2) G-P(sol) polarization free energy of solvation -26.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds