Wall clock time and date at job start Tue Mar 31 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86802 * 119.99437 * 2 1 4 4 H 1.48497 * 109.47078 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99654 * 3 2 1 6 6 H 1.48499 * 109.47326 * 59.99514 * 3 2 1 7 7 C 1.40242 * 120.00625 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00199 * 198.00629 * 7 2 1 9 9 C 1.41084 * 119.99753 * 18.00550 * 7 2 1 10 10 C 1.40903 * 120.09632 * 25.32504 * 9 7 2 11 11 C 1.36301 * 119.89303 * 180.24909 * 10 9 7 12 12 C 1.40074 * 120.10060 * 359.48139 * 11 10 9 13 13 C 1.47485 * 119.89857 * 180.27377 * 12 11 10 14 14 O 1.21519 * 120.00139 * 0.02562 * 13 12 11 15 15 O 1.34787 * 119.99937 * 180.02562 * 13 12 11 16 16 C 1.35899 * 117.00137 * 175.21729 * 15 13 12 17 17 C 1.38784 * 120.04751 * 264.52770 * 16 15 13 18 18 C 1.38126 * 119.99677 * 179.74633 * 17 16 15 19 19 C 1.38255 * 120.07740 * 0.52917 * 18 17 16 20 20 C 1.38477 * 120.09286 * 359.74215 * 19 18 17 21 21 F 1.35103 * 120.00229 * 180.02562 * 20 19 18 22 22 C 1.38382 * 120.00276 * 359.97438 * 20 19 18 23 23 C 1.40078 * 120.19721 * 0.25175 * 12 11 10 24 24 C 1.36291 * 120.10478 * 0.02562 * 23 12 11 25 25 H 0.97003 * 120.00953 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.05599 * 0.02791 * 10 9 7 27 27 H 1.08001 * 119.94723 * 179.75582 * 11 10 9 28 28 H 1.08003 * 119.99738 * 0.02562 * 17 16 15 29 29 H 1.07996 * 119.96470 * 180.27216 * 18 17 16 30 30 H 1.08006 * 119.95825 * 179.72638 * 19 18 17 31 31 H 1.08001 * 120.03907 * 180.02562 * 22 20 19 32 32 H 1.08003 * 119.94527 * 180.02562 * 23 12 11 33 33 H 1.07998 * 120.05323 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7002 1.3466 -0.0006 5 1 1.8814 2.3965 -1.2126 6 1 1.8813 2.3966 1.2124 7 6 2.0077 -1.2145 0.0005 8 1 3.0480 -1.2372 0.2897 9 6 1.3541 -2.4066 -0.3766 10 6 0.2355 -2.3589 -1.2320 11 6 -0.3958 -3.5127 -1.5896 12 6 0.0724 -4.7453 -1.1169 13 6 -0.6104 -5.9916 -1.5116 14 8 -1.5775 -5.9481 -2.2462 15 8 -0.1619 -7.1787 -1.0575 16 6 -0.8941 -8.2781 -1.3768 17 6 -1.8379 -8.7676 -0.4848 18 6 -2.5853 -9.8820 -0.8127 19 6 -2.3868 -10.5174 -2.0244 20 6 -1.4421 -10.0353 -2.9147 21 9 -1.2500 -10.6574 -4.0985 22 6 -0.6954 -8.9157 -2.5924 23 6 1.1876 -4.7979 -0.2708 24 6 1.8217 -3.6487 0.0965 25 1 -0.4852 0.8400 -0.0004 26 1 -0.1233 -1.4094 -1.6008 27 1 -1.2558 -3.4769 -2.2421 28 1 -1.9911 -8.2745 0.4638 29 1 -3.3227 -10.2598 -0.1200 30 1 -2.9692 -11.3913 -2.2769 31 1 0.0412 -8.5389 -3.2865 32 1 1.5455 -5.7505 0.0909 33 1 2.6817 -3.6902 0.7485 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758144503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:34 Heat of formation + Delta-G solvation = -95.825036 kcal Electronic energy + Delta-G solvation = -20615.177286 eV Core-core repulsion = 17098.621509 eV Total energy + Delta-G solvation = -3516.555778 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.079 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.04269 -42.19552 -39.88353 -39.03036 -37.55313 -35.80178 -32.33422 -31.87150 -31.57746 -31.00454 -28.10045 -25.22765 -23.97265 -23.48183 -22.80696 -21.74602 -19.57498 -19.30807 -18.64754 -18.09132 -17.48581 -17.19089 -17.12041 -16.70892 -16.24236 -15.82319 -15.54584 -15.16417 -14.89194 -14.52617 -14.49249 -14.07432 -13.75730 -13.44773 -13.25542 -13.16863 -12.88548 -12.71248 -12.62460 -12.42691 -12.04023 -11.84973 -11.50885 -11.39073 -11.19169 -10.12004 -9.81636 -9.67620 -9.57293 -8.88591 -6.58454 -0.18009 0.01881 0.14768 1.11381 1.32732 1.40684 1.56573 1.75543 1.80320 2.13650 2.54836 2.63718 3.12328 3.58575 3.67906 3.82225 3.88840 4.02507 4.24484 4.31449 4.38340 4.62616 4.86097 4.90689 4.94309 4.95744 5.12456 5.13584 5.16159 5.17643 5.35674 5.51695 5.70728 5.78113 5.90868 5.94523 6.11165 6.45811 6.66599 6.78238 6.95835 8.06467 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.046296 B = 0.003007 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.661638 B = 9309.582584 C = 9332.024360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.251 1.251 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.452 4.452 8 H 0.098 0.902 9 C 0.106 3.894 10 C -0.200 4.200 11 C -0.039 4.039 12 C -0.292 4.292 13 C 0.519 3.481 14 O -0.556 6.556 15 O -0.299 6.299 16 C 0.090 3.910 17 C -0.139 4.139 18 C -0.063 4.063 19 C -0.143 4.143 20 C 0.099 3.901 21 F -0.140 7.140 22 C -0.178 4.178 23 C -0.021 4.021 24 C -0.247 4.247 25 H 0.300 0.700 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.147 0.853 29 H 0.185 0.815 30 H 0.176 0.824 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.165 -11.872 0.835 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.187 4.187 3 Si 0.811 3.189 4 H -0.174 1.174 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.478 4.478 8 H 0.116 0.884 9 C 0.102 3.898 10 C -0.219 4.219 11 C -0.058 4.058 12 C -0.294 4.294 13 C 0.373 3.627 14 O -0.449 6.449 15 O -0.215 6.215 16 C 0.048 3.952 17 C -0.158 4.158 18 C -0.081 4.081 19 C -0.161 4.161 20 C 0.080 3.920 21 F -0.119 7.119 22 C -0.198 4.198 23 C -0.039 4.039 24 C -0.266 4.266 25 H 0.111 0.889 26 H 0.129 0.871 27 H 0.118 0.882 28 H 0.165 0.835 29 H 0.202 0.798 30 H 0.193 0.807 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.647 -11.754 0.582 12.062 hybrid contribution 0.267 0.765 -0.529 0.968 sum -2.380 -10.989 0.053 11.243 Atomic orbital electron populations 1.69771 1.09608 1.32099 1.29793 1.27093 0.95511 1.05369 0.90700 0.84996 0.79670 0.75029 0.79217 1.17366 1.18833 1.18639 1.20334 0.99134 0.91842 1.36498 0.88370 1.18213 0.90528 0.93641 0.87388 1.20912 1.01109 0.96561 1.03318 1.20508 0.97134 0.91597 0.96511 1.18300 1.05959 0.88425 1.16737 1.21768 0.81374 0.82987 0.76591 1.90719 1.29225 1.87184 1.37812 1.84672 1.51428 1.14144 1.71261 1.18644 0.94656 0.87462 0.94399 1.21680 0.94306 0.99075 1.00719 1.21351 0.97855 0.92678 0.96188 1.21637 0.98060 1.02627 0.93782 1.17568 0.98490 0.92943 0.83005 1.91498 1.94483 1.81376 1.44498 1.21327 1.02940 0.97903 0.97580 1.20776 0.92132 0.98287 0.92718 1.20960 1.05422 0.92225 1.08009 0.88854 0.87091 0.88210 0.83494 0.79753 0.80702 0.85259 0.85294 0.86204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.27 11.01 21.87 0.24 -37.03 16 2 C 0.03 1.51 5.13 85.36 0.44 1.95 16 3 Si 0.99 33.20 29.60 68.60 2.03 35.23 16 4 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 5 H -0.26 -8.63 7.11 99.48 0.71 -7.92 16 6 H -0.26 -8.39 7.11 99.48 0.71 -7.69 16 7 C -0.45 -21.61 9.04 23.46 0.21 -21.39 16 8 H 0.10 4.37 7.91 -2.91 -0.02 4.34 16 9 C 0.11 5.30 5.57 -21.28 -0.12 5.19 16 10 C -0.20 -10.21 8.63 22.47 0.19 -10.02 16 11 C -0.04 -1.91 9.52 22.26 0.21 -1.70 16 12 C -0.29 -13.68 5.89 -19.95 -0.12 -13.79 16 13 C 0.52 23.14 7.83 70.26 0.55 23.69 16 14 O -0.56 -26.94 16.08 19.77 0.32 -26.62 16 15 O -0.30 -11.57 9.24 -0.42 0.00 -11.57 16 16 C 0.09 2.99 4.94 22.51 0.11 3.10 16 17 C -0.14 -3.60 9.99 22.37 0.22 -3.38 16 18 C -0.06 -1.14 10.04 22.25 0.22 -0.92 16 19 C -0.14 -2.71 10.02 22.33 0.22 -2.49 16 20 C 0.10 2.58 7.30 22.36 0.16 2.74 16 21 F -0.14 -3.66 17.27 44.97 0.78 -2.88 16 22 C -0.18 -5.59 9.93 22.41 0.22 -5.37 16 23 C -0.02 -0.90 9.55 22.26 0.21 -0.69 16 24 C -0.25 -11.24 9.73 22.47 0.22 -11.02 16 25 H 0.30 12.53 8.29 -92.71 -0.77 11.76 16 26 H 0.11 5.80 6.21 -2.91 -0.02 5.78 16 27 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 28 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 29 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.13 4.85 7.59 -2.91 -0.02 4.82 16 33 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -59.87 305.54 7.48 -52.39 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 1.15 Total: 24.59 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 2.97 Total: -34.10 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.24 Total: -37.03 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: 0.31 Total: -38.20 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.78 Total: -2.88 kcal Atomic # 14 Polarization: 33.20 SS G_CDS: 2.03 Total: 35.23 kcal Total: -59.87 7.48 -52.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758144503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.430 kcal (2) G-P(sol) polarization free energy of solvation -59.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds