Wall clock time and date at job start Tue Mar 31 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47006 * 2 1 4 4 C 1.50704 * 109.47167 * 120.00025 * 2 1 3 5 5 H 1.07997 * 120.00079 * 120.00160 * 4 2 1 6 6 C 1.37878 * 119.99632 * 300.00120 * 4 2 1 7 7 N 1.31514 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99569 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47258 * 60.00184 * 8 6 4 10 10 H 1.48509 * 109.47076 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47474 * 299.99898 * 8 6 4 12 12 N 1.46497 * 109.46966 * 239.99945 * 2 1 3 13 13 C 1.46497 * 120.00451 * 299.99882 * 12 2 1 14 14 C 1.34784 * 119.99738 * 120.00577 * 12 2 1 15 15 O 1.21524 * 120.00229 * 357.18302 * 14 12 2 16 16 C 1.47997 * 119.99686 * 177.19236 * 14 12 2 17 17 N 1.32845 * 119.74612 * 5.89474 * 16 14 12 18 18 C 1.31519 * 121.64688 * 179.75425 * 17 16 14 19 19 Cl 1.73603 * 119.52573 * 180.27594 * 18 17 16 20 20 C 1.38841 * 120.94612 * 0.53006 * 18 17 16 21 21 C 1.38392 * 119.38605 * 359.74462 * 20 18 17 22 22 C 1.39004 * 118.48086 * 359.97438 * 21 20 18 23 23 F 1.35103 * 120.48505 * 179.97438 * 22 21 20 24 24 H 1.08995 * 109.47378 * 300.00141 * 1 2 3 25 25 H 1.09002 * 109.47463 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47459 * 60.00230 * 1 2 3 27 27 H 0.96996 * 120.00158 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47131 * 96.10354 * 13 12 2 29 29 H 1.09001 * 109.47293 * 216.11004 * 13 12 2 30 30 H 1.09006 * 109.47049 * 336.10875 * 13 12 2 31 31 H 1.07998 * 120.30675 * 179.75774 * 20 18 17 32 32 H 1.07992 * 120.76157 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.8062 -1.1209 4.0082 10 1 1.8268 -0.4199 5.2205 11 1 1.8258 -2.5202 4.0078 12 7 2.0182 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0447 1.1417 -1.9175 16 6 3.3377 -0.7501 -3.2594 17 7 2.9658 -2.0026 -3.5000 18 6 3.4225 -2.6710 -4.5366 19 17 2.8940 -4.3031 -4.8025 20 6 4.3252 -2.0917 -5.4183 21 6 4.7445 -0.7905 -5.2035 22 6 4.2417 -0.1050 -4.1037 23 9 4.6239 1.1668 -3.8553 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 0.7094 1.1618 3.4844 28 1 0.7996 -2.1451 -2.0895 29 1 2.5065 -2.6088 -1.8897 30 1 1.4238 -2.5691 -0.4774 31 1 4.6965 -2.6514 -6.2640 32 1 5.4462 -0.3183 -5.8750 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759007021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:23 Heat of formation + Delta-G solvation = -46.364229 kcal Electronic energy + Delta-G solvation = -20462.030397 eV Core-core repulsion = 16977.479302 eV Total energy + Delta-G solvation = -3484.551094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.13872 -41.82119 -40.17546 -37.71902 -37.28257 -35.02774 -33.87049 -32.19068 -31.06437 -27.74631 -27.34577 -26.17337 -24.73136 -23.18775 -20.91787 -19.07732 -18.69066 -18.57182 -18.15460 -17.40319 -17.21145 -16.87047 -16.16218 -16.10422 -15.22757 -15.15410 -14.85752 -14.67118 -14.42930 -13.97052 -13.92513 -13.53685 -13.02095 -12.95109 -12.78641 -12.73492 -12.59274 -12.35701 -12.23411 -12.13945 -11.46747 -11.25581 -11.15486 -10.56970 -10.33126 -10.10210 -9.38428 -8.17107 -6.34167 -0.77771 -0.29582 0.58829 1.40607 1.43464 1.50625 1.56164 2.03241 2.38476 2.42758 2.77987 2.95922 3.10740 3.45062 3.49211 3.80914 4.17395 4.51343 4.58905 4.62892 4.72853 4.78739 4.86886 5.01423 5.09211 5.29504 5.41296 5.52492 5.62066 5.94488 6.10715 6.15808 6.64575 6.70806 7.12138 7.37682 8.87680 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.019836 B = 0.005149 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.206514 B = 5436.992707 C = 6182.045949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.258 3.742 3 H 0.014 0.986 4 C -0.542 4.542 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.968 3.032 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.262 1.262 12 N -0.573 5.573 13 C 0.086 3.914 14 C 0.537 3.463 15 O -0.582 6.582 16 C 0.050 3.950 17 N -0.434 5.434 18 C 0.144 3.856 19 Cl -0.003 7.003 20 C -0.079 4.079 21 C -0.080 4.080 22 C 0.094 3.906 23 F -0.119 7.119 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.018 0.982 27 H 0.266 0.734 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.210 0.790 32 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.823 -10.989 -19.281 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.157 3.843 3 H 0.032 0.968 4 C -0.581 4.581 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.792 3.208 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.187 1.187 12 N -0.300 5.300 13 C -0.057 4.057 14 C 0.324 3.676 15 O -0.463 6.463 16 C -0.088 4.088 17 N -0.148 5.148 18 C -0.024 4.024 19 Cl 0.025 6.975 20 C -0.099 4.099 21 C -0.105 4.105 22 C 0.071 3.929 23 F -0.097 7.097 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.079 0.921 31 H 0.227 0.773 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 6.193 -10.749 -18.433 22.218 hybrid contribution 0.448 0.523 0.821 1.072 sum 6.641 -10.226 -17.611 21.421 Atomic orbital electron populations 1.21858 0.96756 1.00154 1.00064 1.18714 0.91978 0.92377 0.81230 0.96827 1.21482 1.32365 1.13224 0.90991 0.92233 1.25745 0.94927 0.95624 1.01981 1.70009 1.37012 1.23705 1.24678 0.85465 0.78397 0.78968 0.77925 1.20245 1.20555 1.18703 1.48196 1.46561 1.13761 1.21528 1.22307 1.02303 0.80094 1.00950 1.18317 0.80061 0.86136 0.83081 1.90763 1.61892 1.16836 1.76802 1.21013 0.99477 0.91046 0.97260 1.67511 1.23979 1.05387 1.17959 1.22335 0.96612 0.90462 0.92945 1.98437 1.89739 1.14570 1.94714 1.22474 0.93463 0.94131 0.99843 1.22153 0.99645 0.94059 0.94677 1.19052 0.96354 0.80959 0.96574 1.91600 1.88794 1.35550 1.93765 0.90872 0.93554 0.96268 0.92440 0.92559 0.87315 0.92080 0.77289 0.77305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 8.97 71.98 0.65 -5.99 16 2 C 0.26 14.30 2.63 44.25 0.12 14.42 16 3 H 0.01 0.89 6.90 -2.39 -0.02 0.87 16 4 C -0.54 -30.76 7.95 25.60 0.20 -30.56 16 5 H 0.06 3.30 7.44 -2.91 -0.02 3.28 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.92 -53.80 11.32 21.45 0.24 -53.56 16 8 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 12 N -0.57 -27.16 2.75 -830.05 -2.28 -29.45 16 13 C 0.09 3.28 8.30 127.77 1.06 4.34 16 14 C 0.54 25.12 7.66 86.83 0.66 25.78 16 15 O -0.58 -31.73 14.67 -3.79 -0.06 -31.79 16 16 C 0.05 1.73 6.64 41.89 0.28 2.01 16 17 N -0.43 -12.59 5.96 -175.75 -1.05 -13.64 16 18 C 0.14 2.88 7.27 84.88 0.62 3.50 16 19 Cl 0.00 -0.05 29.10 -2.72 -0.08 -0.13 16 20 C -0.08 -0.95 9.88 22.45 0.22 -0.73 16 21 C -0.08 -1.18 10.16 22.49 0.23 -0.95 16 22 C 0.09 2.66 7.31 22.76 0.17 2.82 16 23 F -0.12 -4.07 15.57 44.97 0.70 -3.37 16 24 H 0.07 4.06 6.07 -2.39 -0.01 4.05 16 25 H 0.05 2.17 7.67 -2.39 -0.02 2.15 16 26 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.11 3.78 5.14 -5.89 -0.03 3.75 16 30 H 0.06 2.43 7.12 -2.38 -0.02 2.41 16 31 H 0.21 0.45 8.06 -2.91 -0.02 0.43 16 32 H 0.21 1.20 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -74.30 293.35 5.30 -69.00 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: 1.15 Total: 0.89 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 4.65 Total: 16.05 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -3.09 Total: -96.65 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.06 Total: -31.79 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.70 Total: -3.37 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.13 kcal Total: -74.30 5.30 -69.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759007021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.637 kcal (2) G-P(sol) polarization free energy of solvation -74.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds