Wall clock time and date at job start Tue Mar 31 2020 06:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47431 * 269.97717 * 6 5 4 8 8 C 1.52994 * 109.47421 * 180.02562 * 7 6 5 9 9 O 1.45205 * 109.47136 * 179.97438 * 8 7 6 10 10 C 1.34228 * 117.00003 * 179.97438 * 9 8 7 11 11 O 1.20830 * 119.99956 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99942 * 179.97438 * 10 9 8 13 13 S 1.81005 * 109.47001 * 179.97438 * 12 10 9 14 14 C 1.76194 * 99.99692 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00507 * 0.02562 * 14 13 12 16 16 C 1.38807 * 119.99670 * 179.97438 * 14 13 12 17 17 N 1.31622 * 120.00194 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99835 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46869 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46745 * 120.00268 * 18 16 14 21 21 H 1.48494 * 109.47220 * 240.00505 * 18 16 14 22 22 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 23 23 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 24 24 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 25 25 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 26 26 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 27 27 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 28 28 H 1.09000 * 109.46731 * 299.99720 * 7 6 5 29 29 H 1.08997 * 109.47295 * 59.99345 * 7 6 5 30 30 H 1.09000 * 109.46883 * 299.99558 * 8 7 6 31 31 H 1.08997 * 109.47478 * 59.99387 * 8 7 6 32 32 H 1.08994 * 109.46913 * 300.00350 * 12 10 9 33 33 H 1.08997 * 109.47087 * 60.00452 * 12 10 9 34 34 H 0.97002 * 120.00563 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 6 5.2254 -1.7137 -1.4427 8 6 6.5114 -2.5425 -1.4427 9 8 6.9177 -2.8056 -2.8116 10 6 8.0365 -3.5262 -2.9875 11 8 8.6556 -3.9242 -2.0292 12 6 8.5198 -3.8397 -4.3800 13 16 10.0401 -4.8174 -4.2852 14 6 10.3716 -5.0348 -6.0020 15 1 9.7067 -4.6084 -6.7386 16 6 11.4878 -5.7531 -6.4077 17 7 12.2984 -6.2723 -5.5100 18 14 11.8389 -5.9842 -8.2279 19 1 10.7840 -5.3082 -9.0251 20 1 13.1614 -5.3937 -8.5557 21 1 11.8505 -7.4338 -8.5496 22 7 2.3030 -1.0840 -0.0002 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5142 26 1 5.5843 -0.8849 0.5130 27 1 4.6208 -2.3815 0.5141 28 1 4.4380 -2.2655 -1.9560 29 1 5.4015 -0.7690 -1.9571 30 1 7.2990 -1.9909 -0.9292 31 1 6.3349 -3.4871 -0.9284 32 1 7.7552 -4.4067 -4.9109 33 1 8.7187 -2.9102 -4.9134 34 1 13.0783 -6.7747 -5.7935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763919529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:42 Heat of formation + Delta-G solvation = -32.259922 kcal Electronic energy + Delta-G solvation = -18689.646948 eV Core-core repulsion = 15331.211474 eV Total energy + Delta-G solvation = -3358.435474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.95387 -40.07942 -36.83037 -36.38338 -35.28890 -32.52226 -32.50310 -29.93992 -29.52432 -27.42432 -25.56766 -24.03363 -22.71052 -21.51173 -20.98627 -18.47974 -17.97325 -17.77191 -17.18743 -16.70278 -16.01365 -15.26862 -15.09299 -14.86281 -14.30635 -14.12981 -14.01999 -13.52262 -13.37081 -13.20719 -12.82291 -12.67274 -12.62046 -12.13394 -11.73013 -11.64143 -11.46949 -11.37250 -11.10930 -11.09490 -10.82843 -10.47032 -10.28471 -10.03988 -9.90625 -9.14093 -8.37910 -6.62471 -6.29276 -4.01955 0.74771 1.82199 2.32265 2.61825 2.65364 3.18615 3.20421 3.25512 3.29036 3.49578 3.65625 4.12923 4.36516 4.45601 4.51406 4.77253 4.92718 4.94412 4.98986 5.05505 5.06832 5.14969 5.24919 5.28395 5.48682 5.50084 5.56724 5.66546 5.75829 5.76513 6.05981 6.62802 7.54104 7.79267 8.12093 8.28847 9.16498 10.78261 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.049096 B = 0.002180 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.179926 B =12839.785803 C =13148.457966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.387 5.387 4 O 0.078 5.922 5 C 0.190 3.810 6 C -0.026 4.026 7 C -0.118 4.118 8 C 0.068 3.932 9 O -0.361 6.361 10 C 0.480 3.520 11 O -0.487 6.487 12 C -0.129 4.129 13 S -0.059 6.059 14 C -0.536 4.536 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.922 3.078 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.279 1.279 22 N -0.481 5.481 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.555 11.529 10.606 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.096 5.096 4 O 0.020 5.980 5 C -0.030 4.030 6 C -0.065 4.065 7 C -0.156 4.156 8 C -0.007 4.007 9 O -0.279 6.279 10 C 0.322 3.678 11 O -0.373 6.373 12 C -0.277 4.277 13 S 0.167 5.833 14 C -0.684 4.684 15 H 0.095 0.905 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.748 3.252 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.205 1.205 22 N -0.215 5.215 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.298 11.461 11.878 25.394 hybrid contribution -0.295 0.242 -2.084 2.118 sum -19.593 11.703 9.794 24.834 Atomic orbital electron populations 1.20152 0.82872 1.04689 1.04431 1.25948 1.00689 0.83484 1.00431 1.74655 0.89398 1.23930 1.21596 1.85302 1.22352 1.24771 1.65552 1.28688 0.96890 0.82180 0.95290 1.20126 0.88270 0.98818 0.99246 1.21502 0.97455 1.01935 0.94732 1.22833 0.95949 1.00274 0.81645 1.86491 1.42921 1.67514 1.30987 1.23303 0.77527 0.74489 0.92497 1.90673 1.55230 1.48724 1.42631 1.23304 1.05851 1.06234 0.92309 1.85413 1.21092 1.65545 1.11221 1.22885 1.13836 1.40501 0.91150 0.90510 1.25011 0.94901 0.94577 0.99068 1.70014 1.13653 1.33024 1.33520 0.86066 0.78389 0.78134 0.82624 1.19496 1.20506 1.20500 1.71928 0.99735 1.29393 1.20437 0.89217 0.88950 0.89497 0.87225 0.86519 0.89660 0.89790 0.90684 0.90712 0.87873 0.87875 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 36.01 0.38 0.01 16 2 C 0.17 1.63 8.22 -156.37 -1.28 0.35 16 3 N -0.39 -4.24 12.16 30.90 0.38 -3.87 16 4 O 0.08 0.79 11.31 18.11 0.20 0.99 16 5 C 0.19 1.66 7.77 -13.06 -0.10 1.56 16 6 C -0.03 -0.15 5.84 -27.88 -0.16 -0.31 16 7 C -0.12 -0.90 5.58 -26.73 -0.15 -1.05 16 8 C 0.07 0.71 5.47 37.15 0.20 0.91 16 9 O -0.36 -5.28 10.22 -39.25 -0.40 -5.68 16 10 C 0.48 8.79 7.98 36.01 0.29 9.08 16 11 O -0.49 -10.21 15.61 -18.75 -0.29 -10.50 16 12 C -0.13 -2.56 6.27 36.01 0.23 -2.33 16 13 S -0.06 -1.55 20.58 -107.50 -2.21 -3.76 16 14 C -0.54 -14.86 9.50 30.94 0.29 -14.56 16 15 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 16 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 17 N -0.87 -25.51 13.22 55.49 0.73 -24.78 16 18 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 N -0.48 -4.95 11.55 -9.87 -0.11 -5.07 16 23 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.10 1.89 8.14 -51.92 -0.42 1.47 16 33 H 0.10 1.89 8.14 -51.92 -0.42 1.47 16 34 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 323.79 15.07 4.88 4.88 Total: -1.00 -34.23 323.79 -6.45 -40.68 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -4.19 Total: -4.47 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -0.41 Total: -4.38 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: 1.00 Total: -33.71 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.49 Total: -15.19 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.23 -6.45 -40.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763919529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.422 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds