Wall clock time and date at job start Tue Mar 31 2020 06:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47431 * 269.97717 * 6 5 4 8 8 C 1.52994 * 109.47421 * 180.02562 * 7 6 5 9 9 O 1.45205 * 109.47136 * 179.97438 * 8 7 6 10 10 C 1.34228 * 117.00003 * 179.97438 * 9 8 7 11 11 O 1.20830 * 119.99956 * 0.02562 * 10 9 8 12 12 C 1.50702 * 119.99942 * 179.97438 * 10 9 8 13 13 S 1.81005 * 109.47001 * 179.97438 * 12 10 9 14 14 C 1.76194 * 99.99692 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00507 * 0.02562 * 14 13 12 16 16 C 1.38807 * 119.99670 * 179.97438 * 14 13 12 17 17 N 1.31622 * 120.00194 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99835 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46869 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46745 * 120.00268 * 18 16 14 21 21 H 1.48494 * 109.47220 * 240.00505 * 18 16 14 22 22 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 23 23 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 24 24 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 25 25 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 26 26 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 27 27 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 28 28 H 1.09000 * 109.46731 * 299.99720 * 7 6 5 29 29 H 1.08997 * 109.47295 * 59.99345 * 7 6 5 30 30 H 1.09000 * 109.46883 * 299.99558 * 8 7 6 31 31 H 1.08997 * 109.47478 * 59.99387 * 8 7 6 32 32 H 1.08994 * 109.46913 * 300.00350 * 12 10 9 33 33 H 1.08997 * 109.47087 * 60.00452 * 12 10 9 34 34 H 0.97002 * 120.00563 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 6 5.2254 -1.7137 -1.4427 8 6 6.5114 -2.5425 -1.4427 9 8 6.9177 -2.8056 -2.8116 10 6 8.0365 -3.5262 -2.9875 11 8 8.6556 -3.9242 -2.0292 12 6 8.5198 -3.8397 -4.3800 13 16 10.0401 -4.8174 -4.2852 14 6 10.3716 -5.0348 -6.0020 15 1 9.7067 -4.6084 -6.7386 16 6 11.4878 -5.7531 -6.4077 17 7 12.2984 -6.2723 -5.5100 18 14 11.8389 -5.9842 -8.2279 19 1 10.7840 -5.3082 -9.0251 20 1 13.1614 -5.3937 -8.5557 21 1 11.8505 -7.4338 -8.5496 22 7 2.3030 -1.0840 -0.0002 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5142 26 1 5.5843 -0.8849 0.5130 27 1 4.6208 -2.3815 0.5141 28 1 4.4380 -2.2655 -1.9560 29 1 5.4015 -0.7690 -1.9571 30 1 7.2990 -1.9909 -0.9292 31 1 6.3349 -3.4871 -0.9284 32 1 7.7552 -4.4067 -4.9109 33 1 8.7187 -2.9102 -4.9134 34 1 13.0783 -6.7747 -5.7935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763919529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:41 Heat of formation + Delta-G solvation = -55.075824 kcal Electronic energy + Delta-G solvation = -18690.636320 eV Core-core repulsion = 15331.211474 eV Total energy + Delta-G solvation = -3359.424846 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.66630 -41.43290 -37.90605 -37.18598 -36.09632 -34.60051 -33.28104 -31.35743 -30.14858 -28.28069 -27.65259 -24.76787 -23.51468 -22.37754 -22.06477 -19.88030 -19.20471 -18.74947 -18.36305 -17.82581 -17.23232 -16.88405 -16.28415 -16.08416 -15.75810 -15.01586 -14.64816 -14.49633 -14.44310 -14.16860 -13.98513 -13.65605 -13.52333 -13.17493 -13.16905 -12.91294 -12.66026 -12.50254 -12.33538 -12.25459 -12.09171 -11.75340 -11.57216 -11.47004 -11.16535 -10.94115 -10.35721 -8.71652 -8.36717 -6.15724 0.05467 1.01842 1.15859 1.16651 1.42232 1.42788 1.56755 1.72562 1.99183 2.24671 2.65343 2.98462 3.04222 3.28029 3.67215 3.76950 3.86062 4.10967 4.17896 4.20490 4.34159 4.43199 4.45419 4.48690 4.55525 4.60868 4.74108 4.86224 4.98395 5.02385 5.09495 5.37540 5.42780 6.19442 6.73355 7.05474 7.10076 8.72644 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.049096 B = 0.002180 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.179926 B =12839.785803 C =13148.457966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.161 3.839 3 N -0.412 5.412 4 O 0.069 5.931 5 C 0.196 3.804 6 C -0.020 4.020 7 C -0.105 4.105 8 C 0.060 3.940 9 O -0.354 6.354 10 C 0.491 3.509 11 O -0.519 6.519 12 C -0.111 4.111 13 S -0.137 6.137 14 C -0.547 4.547 15 H 0.086 0.914 16 C 0.015 3.985 17 N -0.909 5.909 18 Si 0.999 3.001 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.274 1.274 22 N -0.504 5.504 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.826 12.176 9.893 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.112 4.112 3 N -0.124 5.124 4 O 0.013 5.987 5 C -0.024 4.024 6 C -0.059 4.059 7 C -0.144 4.144 8 C -0.014 4.014 9 O -0.271 6.271 10 C 0.333 3.667 11 O -0.407 6.407 12 C -0.259 4.259 13 S 0.090 5.910 14 C -0.695 4.695 15 H 0.104 0.896 16 C -0.190 4.190 17 N -0.546 5.546 18 Si 0.821 3.179 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.199 1.199 22 N -0.239 5.239 23 H 0.119 0.881 24 H 0.121 0.879 25 H 0.116 0.884 26 H 0.154 0.846 27 H 0.149 0.851 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.587 12.126 11.171 26.375 hybrid contribution -0.023 0.103 -1.770 1.773 sum -20.610 12.229 9.401 25.743 Atomic orbital electron populations 1.20347 0.80602 1.05773 1.05472 1.26639 1.02169 0.83083 0.99292 1.74647 0.89842 1.24796 1.23088 1.85268 1.22172 1.25334 1.65897 1.29167 0.97392 0.81923 0.93907 1.20255 0.87793 0.99509 0.98297 1.21386 0.95675 1.01356 0.95986 1.23213 0.97410 1.01289 0.79455 1.86449 1.40856 1.66141 1.33698 1.22870 0.78086 0.74382 0.91335 1.90668 1.56485 1.50222 1.43327 1.23098 1.02747 1.05970 0.94114 1.85498 1.25862 1.67681 1.12001 1.23231 1.14254 1.40567 0.91449 0.89636 1.26108 0.94566 0.94025 1.04273 1.70160 1.14349 1.33988 1.36063 0.84896 0.78513 0.78257 0.76235 1.18088 1.19931 1.19931 1.71955 1.00485 1.29932 1.21501 0.88072 0.87884 0.88375 0.84626 0.85091 0.90232 0.89513 0.89698 0.90152 0.86119 0.86063 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.51 71.24 0.75 0.10 16 2 C 0.16 2.98 8.22 138.46 1.14 4.12 16 3 N -0.41 -8.76 12.16 -60.32 -0.73 -9.49 16 4 O 0.07 1.32 11.31 74.85 0.85 2.16 16 5 C 0.20 3.14 7.77 88.38 0.69 3.83 16 6 C -0.02 -0.18 5.84 29.85 0.17 -0.01 16 7 C -0.11 -1.38 5.58 30.59 0.17 -1.21 16 8 C 0.06 1.13 5.47 71.98 0.39 1.53 16 9 O -0.35 -9.67 10.22 -51.40 -0.53 -10.20 16 10 C 0.49 17.42 7.98 71.24 0.57 17.99 16 11 O -0.52 -21.58 15.61 21.95 0.34 -21.24 16 12 C -0.11 -4.28 6.27 71.24 0.45 -3.83 16 13 S -0.14 -7.30 20.58 -56.49 -1.16 -8.46 16 14 C -0.55 -30.31 9.50 67.96 0.65 -29.66 16 15 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 16 C 0.02 0.85 5.49 84.86 0.47 1.32 16 17 N -0.91 -54.25 13.22 21.65 0.29 -53.97 16 18 Si 1.00 42.58 29.55 68.60 2.03 44.60 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 22 N -0.50 -9.78 11.55 -303.19 -3.50 -13.28 16 23 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.13 0.90 8.14 -2.39 -0.02 0.89 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.08 1.47 8.13 -2.39 -0.02 1.45 16 32 H 0.12 4.24 8.14 -2.40 -0.02 4.22 16 33 H 0.12 4.24 8.14 -2.40 -0.02 4.22 16 34 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -74.64 323.79 4.13 -70.51 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.11 Total: 5.18 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.44 Total: -5.82 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -3.95 Total: -76.74 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: 0.66 Total: -29.27 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -7.30 SS G_CDS: -1.16 Total: -8.46 kcal Total: -74.64 4.13 -70.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763919529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.434 kcal (2) G-P(sol) polarization free energy of solvation -74.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds