Wall clock time and date at job start Tue Mar 31 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29033 * 124.91551 * 2 1 4 4 C 1.31781 * 117.12391 * 179.97438 * 3 2 1 5 5 C 1.33639 * 114.50139 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.03597 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47212 * 89.99975 * 6 5 4 8 8 N 1.46500 * 109.47473 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00376 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99593 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00115 * 180.02562 * 9 8 7 12 12 S 1.80997 * 109.46829 * 179.97438 * 11 9 8 13 13 C 1.76204 * 99.99823 * 179.97438 * 12 11 9 14 14 H 1.07997 * 119.99808 * 0.02562 * 13 12 11 15 15 C 1.38796 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31633 * 120.00069 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99948 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47176 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.47278 * 120.00080 * 17 15 13 20 20 H 1.48504 * 109.47014 * 240.00065 * 17 15 13 21 21 S 1.70977 * 124.91989 * 180.30875 * 2 1 3 22 22 H 1.09004 * 109.46618 * 89.98126 * 1 2 3 23 23 H 1.08996 * 109.47467 * 209.97467 * 1 2 3 24 24 H 1.09004 * 109.47779 * 329.98128 * 1 2 3 25 25 H 1.08006 * 122.74698 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.47060 * 210.00030 * 6 5 4 27 27 H 1.09001 * 109.47380 * 330.00118 * 6 5 4 28 28 H 1.09002 * 109.47153 * 299.99998 * 7 6 5 29 29 H 1.08998 * 109.47533 * 59.99628 * 7 6 5 30 30 H 0.97004 * 119.99396 * 0.02562 * 8 7 6 31 31 H 1.09002 * 109.46793 * 299.99519 * 11 9 8 32 32 H 1.08992 * 109.46831 * 59.99969 * 11 9 8 33 33 H 0.96999 * 119.99948 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8794 0.0005 5 6 3.9354 -0.4006 0.0004 6 6 5.3575 -0.8993 0.0004 7 6 5.8387 -1.0682 1.4429 8 7 7.2210 -1.5536 1.4429 9 6 7.8567 -1.7773 2.6101 10 8 7.2842 -1.5771 3.6604 11 6 9.2788 -2.2760 2.6101 12 16 9.8480 -2.4759 4.3165 13 6 11.4878 -3.0519 4.0266 14 1 11.8452 -3.1770 3.0152 15 6 12.3201 -3.3447 5.0980 16 7 11.8843 -3.1927 6.3308 17 14 14.0587 -3.9546 4.7906 18 1 14.3022 -4.0396 3.3281 19 1 15.0295 -3.0107 5.4005 20 1 14.2265 -5.2990 5.3988 21 16 2.4857 -1.4019 -0.0076 22 1 -0.3633 0.0003 -1.0277 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3635 0.8898 0.5141 25 1 4.2531 1.7002 0.0002 26 1 5.4058 -1.8593 -0.5135 27 1 5.9949 -0.1797 -0.5134 28 1 5.7904 -0.1081 1.9568 29 1 5.2014 -1.7877 1.9567 30 1 7.6786 -1.7140 0.6028 31 1 9.3271 -3.2359 2.0958 32 1 9.9162 -1.5562 2.0967 33 1 12.4661 -3.3970 7.0795 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772123659.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:30 Heat of formation + Delta-G solvation = -31.973786 kcal Electronic energy + Delta-G solvation = -16602.671489 eV Core-core repulsion = 13687.001293 eV Total energy + Delta-G solvation = -2915.670196 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.055 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82704 -40.49630 -36.75196 -34.58342 -34.12319 -32.03558 -30.57136 -27.89656 -27.50938 -25.04126 -23.60510 -21.89083 -20.32800 -19.80321 -19.02304 -17.79167 -17.33817 -16.87742 -16.78460 -16.18558 -15.92825 -15.68671 -15.28329 -14.76162 -14.70711 -14.41661 -14.02983 -13.64330 -13.61157 -13.15704 -13.02249 -12.96361 -12.92178 -12.84580 -12.58121 -11.99572 -11.71055 -11.15678 -11.02930 -10.61856 -10.27112 -10.25463 -10.15874 -9.72153 -8.66793 -8.34559 -6.12697 -0.31920 0.35233 0.74862 1.27392 1.41988 1.47641 1.58574 1.59939 1.80465 2.25583 2.29523 2.99765 3.26410 3.32672 3.80865 3.91278 3.98449 4.07349 4.15132 4.31287 4.42500 4.52357 4.56409 4.64448 4.66265 4.93957 4.96984 5.03251 5.25336 5.37793 5.42749 6.20522 6.49561 6.74696 7.06931 7.23608 8.74932 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.060019 B = 0.002390 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.403851 B =11710.509476 C =11833.360249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.035 3.965 3 N -0.508 5.508 4 C 0.029 3.971 5 C -0.227 4.227 6 C -0.039 4.039 7 C 0.128 3.872 8 N -0.711 5.711 9 C 0.533 3.467 10 O -0.568 6.568 11 C -0.128 4.128 12 S -0.157 6.157 13 C -0.543 4.543 14 H 0.084 0.916 15 C 0.011 3.989 16 N -0.912 5.912 17 Si 1.000 3.000 18 H -0.255 1.255 19 H -0.275 1.275 20 H -0.275 1.275 21 S 0.140 5.860 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.187 0.813 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.420 0.580 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.635 3.690 -20.040 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.242 4.242 3 N -0.224 5.224 4 C -0.122 4.122 5 C -0.349 4.349 6 C -0.079 4.079 7 C 0.003 3.997 8 N -0.365 5.365 9 C 0.319 3.681 10 O -0.446 6.446 11 C -0.279 4.279 12 S 0.070 5.930 13 C -0.691 4.691 14 H 0.103 0.897 15 C -0.194 4.194 16 N -0.549 5.549 17 Si 0.822 3.178 18 H -0.179 1.179 19 H -0.200 1.200 20 H -0.200 1.200 21 S 0.395 5.605 22 H 0.120 0.880 23 H 0.117 0.883 24 H 0.107 0.893 25 H 0.203 0.797 26 H 0.121 0.879 27 H 0.134 0.866 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.258 0.742 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.079 3.465 -18.162 27.295 hybrid contribution 2.356 0.262 -1.057 2.595 sum -17.723 3.727 -19.218 26.407 Atomic orbital electron populations 1.20621 0.83128 1.05153 1.05119 1.27647 1.03284 0.90968 1.02327 1.66336 1.05617 1.32781 1.17635 1.22017 0.91239 0.96712 1.02211 1.25850 1.00164 0.96222 1.12650 1.20148 0.88489 1.04207 0.95042 1.21308 0.81603 0.99270 0.97499 1.45657 1.14560 1.68111 1.08215 1.20119 0.87568 0.76577 0.83886 1.90705 1.68330 1.52382 1.33205 1.23365 0.95747 1.05671 1.03143 1.85633 1.15505 1.87003 1.04824 1.23236 0.98489 1.51216 0.96183 0.89740 1.26156 1.04118 0.95075 0.94018 1.70197 1.38463 1.46952 0.99263 0.84885 0.76023 0.77772 0.79130 1.17890 1.20013 1.19999 1.83979 0.97215 1.11656 1.67693 0.88001 0.88330 0.89272 0.79652 0.87916 0.86577 0.92492 0.92881 0.74203 0.86918 0.86917 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.46 71.23 0.75 -0.03 16 2 C 0.03 0.59 7.39 88.52 0.65 1.24 16 3 N -0.51 -10.82 10.54 -191.45 -2.02 -12.84 16 4 C 0.03 0.54 11.25 83.66 0.94 1.48 16 5 C -0.23 -3.75 5.85 24.64 0.14 -3.61 16 6 C -0.04 -0.50 5.86 29.85 0.18 -0.33 16 7 C 0.13 2.71 5.66 86.38 0.49 3.20 16 8 N -0.71 -16.51 5.56 -463.06 -2.57 -19.08 16 9 C 0.53 19.19 7.85 87.66 0.69 19.88 16 10 O -0.57 -26.43 15.86 -3.05 -0.05 -26.48 16 11 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 12 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 13 C -0.54 -30.80 9.50 67.95 0.65 -30.16 16 14 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 15 C 0.01 0.62 5.49 84.86 0.47 1.08 16 16 N -0.91 -56.09 13.22 21.65 0.29 -55.80 16 17 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 S 0.14 2.14 23.18 -56.49 -1.31 0.83 16 22 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 23 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.19 2.83 8.06 -2.91 -0.02 2.80 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.42 6.28 8.47 -92.71 -0.79 5.49 16 31 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 32 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -80.05 321.20 0.93 -79.11 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.34 Total: 10.42 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 5.39 Total: -11.72 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -4.30 Total: -87.73 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.05 Total: -26.48 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -6.54 SS G_CDS: -2.47 Total: -9.01 kcal Total: -80.05 0.93 -79.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772123659.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.141 kcal (2) G-P(sol) polarization free energy of solvation -80.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds