Wall clock time and date at job start Tue Mar 31 2020 05:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00393 * 2 1 4 4 H 1.48496 * 109.47446 * 240.00230 * 3 2 1 5 5 H 1.48493 * 109.46749 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46581 * 119.99904 * 3 2 1 7 7 C 1.37885 * 119.99511 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.53123 * 109.57574 * 60.30132 * 9 7 2 11 11 C 1.53034 * 109.27992 * 177.60215 * 10 9 7 12 12 N 1.46847 * 109.51345 * 300.80438 * 11 10 9 13 13 C 1.46895 * 110.99982 * 185.84805 * 12 11 10 14 14 C 1.50701 * 109.47042 * 189.99790 * 13 12 11 15 15 C 1.33565 * 126.01981 * 89.71965 * 14 13 12 16 16 N 1.31867 * 114.51042 * 179.78761 * 15 14 13 17 17 C 1.29138 * 117.07734 * 0.51612 * 16 15 14 18 18 Cl 1.73599 * 124.92527 * 179.73850 * 17 16 15 19 19 S 1.70979 * 110.15202 * 359.71295 * 17 16 15 20 20 C 1.46843 * 111.20124 * 61.74903 * 12 11 10 21 21 C 1.53042 * 109.52278 * 298.25596 * 20 12 11 22 22 H 0.96998 * 119.99701 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.52421 * 300.13228 * 9 7 2 24 24 H 1.08997 * 109.51083 * 57.64808 * 10 9 7 25 25 H 1.08998 * 109.48980 * 297.53740 * 10 9 7 26 26 H 1.09002 * 109.46271 * 180.79158 * 11 10 9 27 27 H 1.08994 * 109.46242 * 60.81457 * 11 10 9 28 28 H 1.08997 * 109.47358 * 309.99752 * 13 12 11 29 29 H 1.09001 * 109.47788 * 69.99563 * 13 12 11 30 30 H 1.07997 * 122.74392 * 359.95750 * 15 14 13 31 31 H 1.08993 * 109.46313 * 58.27251 * 20 12 11 32 32 H 1.09000 * 109.46480 * 178.25361 * 20 12 11 33 33 H 1.08997 * 109.50758 * 179.11703 * 21 20 12 34 34 H 1.08998 * 109.50897 * 299.20258 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 0.3749 -2.5858 -1.2534 11 6 -0.3411 -3.9381 -1.2769 12 7 0.6526 -5.0193 -1.2772 13 6 0.0062 -6.3284 -1.4391 14 6 1.0143 -7.4206 -1.1907 15 6 1.2836 -7.9876 -0.0117 16 7 2.2073 -8.9277 -0.0550 17 6 2.7388 -9.1770 -1.2052 18 17 3.9726 -10.3636 -1.4937 19 16 2.0506 -8.1694 -2.4029 20 6 1.4748 -4.9852 -0.0610 21 6 2.2449 -3.6640 -0.0011 22 1 -0.4849 0.8401 0.0004 23 1 0.6225 -2.5570 0.8882 24 1 0.9992 -2.4890 -2.1416 25 1 -0.3629 -1.7836 -1.2375 26 1 -0.9548 -4.0086 -2.1750 27 1 -0.9757 -4.0284 -0.3954 28 1 -0.8124 -6.4202 -0.7252 29 1 -0.3842 -6.4180 -2.4529 30 1 0.7837 -7.7015 0.9019 31 1 0.8316 -5.0707 0.8147 32 1 2.1802 -5.8161 -0.0761 33 1 2.8430 -3.6323 0.9095 34 1 2.8991 -3.5843 -0.8692 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782087139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:53 Heat of formation + Delta-G solvation = 21.551851 kcal Electronic energy + Delta-G solvation = -18096.077145 eV Core-core repulsion = 15180.684289 eV Total energy + Delta-G solvation = -2915.392856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.060 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.05902 -39.64277 -37.97928 -36.01546 -33.72016 -31.94825 -30.90534 -28.38694 -26.76925 -25.13979 -23.64848 -22.93609 -21.30750 -20.34312 -19.31564 -18.44663 -17.12881 -16.99577 -16.48209 -15.90839 -15.71196 -15.39706 -15.12172 -14.79693 -14.45857 -14.26082 -13.55801 -13.50713 -13.08456 -12.92855 -12.79805 -12.61884 -12.51546 -12.38790 -12.12951 -12.01860 -11.86659 -11.34795 -10.87664 -10.79195 -10.66460 -10.42726 -10.34177 -9.88726 -9.18310 -8.06975 -6.19567 -0.58222 -0.30171 0.53241 0.83610 1.42661 1.43212 1.50878 1.57164 2.44911 3.07612 3.20270 3.50088 3.72606 4.05882 4.18703 4.30925 4.41067 4.54353 4.61056 4.72595 4.76920 4.91180 4.93385 4.97018 5.10910 5.23073 5.33966 5.57092 5.63981 6.01142 6.01489 6.23567 6.28564 6.39936 6.43103 6.91176 7.47909 8.97275 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.034143 B = 0.003578 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.891264 B = 7823.773589 C = 8211.282175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.047 0.953 9 C 0.045 3.955 10 C -0.096 4.096 11 C 0.070 3.930 12 N -0.537 5.537 13 C 0.127 3.873 14 C -0.208 4.208 15 C 0.041 3.959 16 N -0.484 5.484 17 C 0.040 3.960 18 Cl 0.029 6.971 19 S 0.256 5.744 20 C 0.068 3.932 21 C -0.100 4.100 22 H 0.260 0.740 23 H -0.010 1.010 24 H 0.031 0.969 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.024 0.976 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.191 0.809 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 -18.692 -5.689 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.134 4.134 11 C -0.057 4.057 12 N -0.263 5.263 13 C -0.002 4.002 14 C -0.330 4.330 15 C -0.110 4.110 16 N -0.202 5.202 17 C -0.261 4.261 18 Cl 0.056 6.944 19 S 0.506 5.494 20 C -0.060 4.060 21 C -0.138 4.138 22 H 0.070 0.930 23 H 0.009 0.991 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.042 0.958 28 H 0.089 0.911 29 H 0.125 0.875 30 H 0.208 0.792 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.544 -18.842 -6.729 20.067 hybrid contribution -0.284 1.104 1.816 2.144 sum 1.261 -17.738 -4.913 18.449 Atomic orbital electron populations 1.69983 1.06965 1.27099 1.51416 1.25680 0.95684 1.02095 0.94867 0.85746 0.78520 0.79495 0.78696 1.19766 1.20845 1.19968 1.21556 0.92888 0.92434 1.50503 0.93472 1.18652 0.93108 0.92218 0.93372 1.21420 0.99203 0.94896 0.97886 1.22070 0.92681 0.90881 1.00116 1.62133 1.23611 1.02217 1.38303 1.20622 0.91842 0.83852 1.03862 1.26155 1.05572 1.05034 0.96283 1.21741 0.96373 0.93583 0.99343 1.66006 1.10727 1.17838 1.25600 1.27256 1.01882 1.01977 0.94989 1.98421 1.48455 1.53080 1.94400 1.84008 1.29488 1.26712 1.09143 1.22062 0.96077 0.97725 0.90155 1.21542 0.98096 0.94341 0.99798 0.93048 0.99148 0.95036 0.91779 0.89827 0.95769 0.91089 0.87478 0.79240 0.95431 0.90834 0.93488 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.22 11.37 21.45 0.24 -51.97 16 2 C 0.02 0.85 5.31 84.66 0.45 1.30 16 3 Si 0.95 43.65 29.54 68.60 2.03 45.68 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.54 -29.74 8.56 25.60 0.22 -29.52 16 8 H 0.05 2.60 7.75 -2.91 -0.02 2.58 16 9 C 0.05 2.24 2.16 -11.46 -0.02 2.21 16 10 C -0.10 -4.38 5.12 30.65 0.16 -4.23 16 11 C 0.07 2.44 5.42 86.32 0.47 2.91 16 12 N -0.54 -16.54 4.80 -900.96 -4.32 -20.86 16 13 C 0.13 2.85 5.81 85.56 0.50 3.34 16 14 C -0.21 -4.58 4.78 24.63 0.12 -4.47 16 15 C 0.04 0.96 9.55 83.63 0.80 1.76 16 16 N -0.48 -12.46 10.56 -194.44 -2.05 -14.52 16 17 C 0.04 0.92 8.03 130.64 1.05 1.97 16 18 Cl 0.03 0.57 29.33 -2.72 -0.08 0.49 16 19 S 0.26 5.07 23.22 -56.49 -1.31 3.76 16 20 C 0.07 2.25 4.75 86.33 0.41 2.66 16 21 C -0.10 -4.16 5.32 30.65 0.16 -3.99 16 22 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.06 3.32 6.17 -2.39 -0.01 3.31 16 26 H 0.08 2.51 8.12 -2.39 -0.02 2.49 16 27 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.44 8.08 -2.39 -0.02 1.42 16 29 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 31 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 2.27 5.65 -2.39 -0.01 2.25 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -60.62 304.09 -0.09 -60.72 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: 1.10 Total: 2.75 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 4.31 Total: -26.04 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -6.13 Total: -87.35 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.31 Total: 3.76 kcal Atomic # 17 Polarization: 0.57 SS G_CDS: -0.08 Total: 0.49 kcal Total: -60.62 -0.09 -60.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782087139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.267 kcal (2) G-P(sol) polarization free energy of solvation -60.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds