Wall clock time and date at job start Tue Mar 31 2020 05:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38240 * 119.99454 * 2 1 4 4 C 1.38334 * 119.98712 * 180.32014 * 3 2 1 5 5 Cl 1.73598 * 120.01492 * 179.72854 * 4 3 2 6 6 C 1.38372 * 119.97022 * 359.70176 * 4 3 2 7 7 C 1.38195 * 119.98872 * 0.02562 * 6 4 3 8 8 C 1.38216 * 119.99577 * 179.75127 * 2 1 3 9 9 C 1.50706 * 119.98551 * 359.97294 * 8 2 1 10 10 S 1.81400 * 109.47256 * 269.73334 * 9 8 2 11 11 O 1.42100 * 109.46662 * 296.38485 * 10 9 8 12 12 C 1.81401 * 103.00097 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.47326 * 179.97438 * 12 10 9 14 14 C 1.50692 * 109.47014 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00486 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99945 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99872 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00205 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47086 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47170 * 119.99991 * 18 16 14 21 21 H 1.48503 * 109.47063 * 239.99754 * 18 16 14 22 22 H 1.08999 * 109.47308 * 270.25667 * 1 2 3 23 23 H 1.09005 * 109.47360 * 30.25042 * 1 2 3 24 24 H 1.09000 * 109.47647 * 150.25399 * 1 2 3 25 25 H 1.07997 * 120.00796 * 359.97438 * 3 2 1 26 26 H 1.08005 * 120.00788 * 179.97438 * 6 4 3 27 27 H 1.08004 * 119.98884 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.46953 * 29.72812 * 9 8 2 29 29 H 1.09000 * 109.47318 * 149.72410 * 9 8 2 30 30 H 1.09007 * 109.46813 * 299.99841 * 12 10 9 31 31 H 1.08998 * 109.47330 * 59.99409 * 12 10 9 32 32 H 1.08997 * 109.47148 * 299.99952 * 13 12 10 33 33 H 1.09003 * 109.46887 * 59.99899 * 13 12 10 34 34 H 0.97000 * 119.99908 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5813 1.1971 -0.0067 5 17 4.4499 2.7002 -0.0138 6 6 4.2724 -0.0017 -0.0071 7 6 3.5805 -1.1979 -0.0014 8 6 2.1979 -1.1970 0.0052 9 6 1.4439 -2.5019 0.0115 10 16 1.1490 -3.0217 1.7242 11 8 2.3929 -3.2713 2.3642 12 6 0.2457 -4.5824 1.5273 13 6 -0.0826 -5.1591 2.9058 14 6 -0.8335 -6.4553 2.7421 15 1 -1.0550 -6.8301 1.7537 16 6 -1.2389 -7.1624 3.8542 17 7 -0.9706 -6.7052 5.0579 18 14 -2.1692 -8.7695 3.6514 19 1 -2.3435 -9.0615 2.2059 20 1 -1.4025 -9.8692 4.2902 21 1 -3.5016 -8.6550 4.2970 22 1 -0.3634 0.0046 1.0276 23 1 -0.3634 0.8878 -0.5177 24 1 -0.3634 -0.8922 -0.5099 25 1 1.6581 2.1326 -0.0004 26 1 5.3525 -0.0025 -0.0128 27 1 4.1199 -2.1336 -0.0014 28 1 0.4893 -2.3724 -0.4983 29 1 2.0304 -3.2629 -0.5034 30 1 -0.6790 -4.4003 0.9796 31 1 0.8617 -5.2915 0.9744 32 1 0.8423 -5.3412 3.4531 33 1 -0.6986 -4.4501 3.4590 34 1 -1.2555 -7.2028 5.8403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790140125.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:45 Heat of formation + Delta-G solvation = -39.883725 kcal Electronic energy + Delta-G solvation = -17322.815152 eV Core-core repulsion = 14372.465499 eV Total energy + Delta-G solvation = -2950.349654 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.054 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75571 -36.73804 -35.20054 -33.70784 -33.31184 -32.27446 -30.91948 -27.81573 -26.61315 -25.27563 -22.47625 -21.49242 -20.74210 -17.16499 -16.83990 -16.54552 -16.14313 -15.40666 -15.03332 -14.55898 -14.21721 -14.00935 -13.85628 -13.42344 -13.26178 -13.09612 -12.89040 -12.52768 -12.31641 -11.79162 -11.52350 -11.43845 -11.35291 -11.22624 -11.01303 -10.93123 -10.75196 -10.18417 -10.16868 -9.58455 -9.27177 -8.99352 -8.48874 -8.44555 -7.69598 -6.07405 -4.11820 0.88210 1.12780 1.95963 2.00181 3.10648 3.26487 3.34229 3.37625 3.50167 4.17223 4.40285 4.55806 4.59580 4.72290 4.93558 5.02399 5.27522 5.27724 5.41176 5.46528 5.57641 5.66126 5.79956 5.89956 5.96996 6.06329 6.09293 6.15877 6.42138 6.66375 6.76052 7.45969 7.57181 7.87669 8.28533 8.93155 9.52595 11.03208 Molecular weight = 286.05amu Principal moments of inertia in cm(-1) A = 0.045276 B = 0.003012 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.283768 B = 9292.747784 C = 9467.125050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 C -0.109 4.109 4 C -0.037 4.037 5 Cl -0.078 7.078 6 C -0.112 4.112 7 C -0.096 4.096 8 C -0.050 4.050 9 C -0.425 4.425 10 S 1.222 4.778 11 O -0.842 6.842 12 C -0.417 4.417 13 C 0.038 3.962 14 C -0.519 4.519 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.892 5.892 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.282 1.282 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.135 0.865 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.029 0.971 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.437 17.928 -12.111 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.072 4.072 3 C -0.127 4.127 4 C -0.064 4.064 5 Cl -0.049 7.049 6 C -0.131 4.131 7 C -0.116 4.116 8 C -0.051 4.051 9 C -0.557 4.557 10 S 1.423 4.577 11 O -0.837 6.837 12 C -0.557 4.557 13 C -0.001 4.001 14 C -0.559 4.559 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.531 5.531 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.208 1.208 22 H 0.104 0.896 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.152 0.848 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.795 18.486 -11.115 21.901 hybrid contribution 0.915 -2.430 -1.218 2.868 sum 4.710 16.056 -12.333 20.786 Atomic orbital electron populations 1.20986 0.89995 1.03464 1.03722 1.19708 0.96716 0.91384 0.99377 1.20876 0.91756 0.98555 1.01558 1.20871 0.92519 0.86864 1.06186 1.98359 1.76867 1.32625 1.97040 1.20979 1.00414 0.90591 1.01082 1.21052 0.93690 0.97949 0.98889 1.19137 0.93194 0.93222 0.99532 1.26977 1.06092 0.99506 1.23124 1.70572 0.99449 1.03042 0.84653 1.93105 1.43373 1.84903 1.62356 1.27631 1.07857 1.12523 1.07655 1.18793 0.97460 0.96289 0.87511 1.21180 1.35960 1.06034 0.92686 0.92416 1.25052 0.96145 0.98026 0.95267 1.69971 1.46478 1.39049 0.97580 0.86488 0.79586 0.83446 0.78208 1.19745 1.20963 1.20794 0.89596 0.91167 0.90356 0.84763 0.85062 0.85261 0.85410 0.88851 0.87565 0.90866 0.95894 0.95305 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 9.60 36.00 0.35 -0.56 16 2 C -0.07 -0.72 5.88 -104.63 -0.62 -1.34 16 3 C -0.11 -1.10 9.49 -39.55 -0.38 -1.48 16 4 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 5 Cl -0.08 -0.79 28.96 -51.86 -1.50 -2.29 16 6 C -0.11 -1.31 9.83 -39.55 -0.39 -1.70 16 7 C -0.10 -1.25 9.70 -39.59 -0.38 -1.63 16 8 C -0.05 -0.61 5.14 -104.62 -0.54 -1.14 16 9 C -0.42 -5.06 5.65 36.01 0.20 -4.86 16 10 S 1.22 19.04 13.14 -107.50 -1.41 17.62 16 11 O -0.84 -18.50 18.14 -35.23 -0.64 -19.14 16 12 C -0.42 -7.87 5.86 37.16 0.22 -7.65 16 13 C 0.04 0.96 4.98 -27.89 -0.14 0.82 16 14 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 18 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 24 H 0.08 0.49 5.94 -51.93 -0.31 0.18 16 25 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 26 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 27 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 28 H 0.13 1.12 5.93 -51.92 -0.31 0.81 16 29 H 0.09 1.17 8.09 -51.92 -0.42 0.75 16 30 H 0.11 1.68 8.14 -51.92 -0.42 1.25 16 31 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 32 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 320.38 15.07 4.83 4.83 Total: -1.00 -35.09 320.38 -9.72 -44.82 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.38 Total: -2.89 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: -2.33 Total: -33.43 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.79 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.64 Total: -19.14 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 19.04 SS G_CDS: -1.41 Total: 17.62 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.09 -9.72 -44.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790140125.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.933 kcal (2) G-P(sol) polarization free energy of solvation -35.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds