Wall clock time and date at job start Tue Mar 31 2020 06:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29849 * 126.82041 * 2 1 4 4 O 1.20733 * 112.82342 * 180.02562 * 3 2 1 5 5 C 1.34038 * 112.03203 * 0.02562 * 4 3 2 6 6 N 1.37023 * 127.19127 * 179.97438 * 5 4 3 7 7 C 1.39993 * 105.61966 * 359.97438 * 5 4 3 8 8 C 1.46507 * 128.41744 * 179.97438 * 7 5 4 9 9 O 1.21636 * 120.00039 * 270.02777 * 8 7 5 10 10 O 1.34861 * 120.00232 * 90.02311 * 8 7 5 11 11 C 1.45200 * 117.00387 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47530 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47687 * 180.02562 * 12 11 10 14 14 S 1.80993 * 109.47439 * 179.97438 * 13 12 11 15 15 C 1.76200 * 99.99966 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00470 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99704 * 180.02562 * 15 14 13 18 18 N 1.31632 * 119.99621 * 180.02562 * 17 15 14 19 19 Si 1.86790 * 120.00411 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47368 * 90.00346 * 19 17 15 21 21 H 1.48503 * 109.47414 * 210.00528 * 19 17 15 22 22 H 1.48508 * 109.47112 * 330.00240 * 19 17 15 23 23 H 1.09005 * 109.46871 * 89.97873 * 1 2 3 24 24 H 1.09003 * 109.47229 * 209.97496 * 1 2 3 25 25 H 1.08995 * 109.47269 * 329.97468 * 1 2 3 26 26 H 0.96998 * 120.00152 * 0.02965 * 6 5 4 27 27 H 0.96996 * 120.00000 * 180.02562 * 6 5 4 28 28 H 1.09001 * 109.47157 * 300.00376 * 11 10 8 29 29 H 1.09009 * 109.46825 * 60.00078 * 11 10 8 30 30 H 1.09004 * 109.46890 * 300.00763 * 12 11 10 31 31 H 1.09000 * 109.47196 * 59.99882 * 12 11 10 32 32 H 1.09001 * 109.46892 * 300.00257 * 13 12 11 33 33 H 1.09000 * 109.47085 * 59.99586 * 13 12 11 34 34 H 0.97002 * 120.00050 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2852 1.0395 0.0000 4 8 3.4567 0.7474 -0.0005 5 6 3.6440 -0.5798 -0.0015 6 7 4.8406 -1.2473 -0.0027 7 6 2.3617 -1.1415 -0.0009 8 6 1.9884 -2.5582 -0.0021 9 8 1.8330 -3.1453 -1.0560 10 8 1.8171 -3.2114 1.1653 11 6 1.4470 -4.6133 1.0882 12 6 1.2981 -5.1800 2.5014 13 6 0.9088 -6.6574 2.4202 14 16 0.7334 -7.3279 4.0922 15 6 0.2941 -8.9910 3.7103 16 1 0.2108 -9.3047 2.6803 17 6 0.0552 -9.8981 4.7335 18 7 -0.2725 -11.1406 4.4481 19 14 0.2000 -9.3559 6.5151 20 1 -1.1152 -8.8545 6.9884 21 1 0.6199 -10.5093 7.3510 22 1 1.2105 -8.2730 6.6224 23 1 -0.3633 0.0004 -1.0277 24 1 -0.3634 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5142 26 1 5.6734 -0.7501 -0.0026 27 1 4.8549 -2.2172 -0.0037 28 1 0.5004 -4.7105 0.5565 29 1 2.2215 -5.1647 0.5549 30 1 2.2445 -5.0827 3.0335 31 1 0.5235 -4.6286 3.0343 32 1 -0.0374 -6.7550 1.8881 33 1 1.6837 -7.2086 1.8875 34 1 -0.4392 -11.7746 5.1631 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805354376.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:35 Heat of formation + Delta-G solvation = -39.207313 kcal Electronic energy + Delta-G solvation = -19291.694309 eV Core-core repulsion = 15932.957574 eV Total energy + Delta-G solvation = -3358.736736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -45.14479 -40.37041 -36.84116 -36.15300 -35.08629 -33.62782 -32.48423 -30.29356 -29.09913 -27.02915 -25.72177 -24.81806 -21.74664 -21.49198 -21.10014 -18.67518 -18.14878 -17.72929 -17.59240 -17.37021 -16.97616 -16.47236 -15.15522 -15.02517 -14.61506 -14.27879 -13.69307 -13.56775 -13.24890 -13.01250 -12.86331 -12.82505 -12.61179 -12.32585 -11.59818 -11.48599 -11.26144 -11.13567 -11.01800 -10.95818 -10.42515 -10.34868 -10.30249 -9.85648 -9.05226 -8.64876 -8.58260 -7.01576 -6.32754 -4.06388 1.15063 1.67342 1.78360 1.89298 2.57923 2.99693 3.26987 3.41464 3.51112 3.54239 3.86614 4.27150 4.42755 4.60583 4.69425 4.82659 4.97223 5.06197 5.07747 5.21005 5.23373 5.32391 5.36538 5.62144 5.68020 5.78201 5.98759 6.25360 6.28177 6.31503 6.50862 6.64864 7.54884 7.90868 7.99115 8.40102 9.12597 10.76655 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.034088 B = 0.002692 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.203611 B =10398.117557 C =10416.848052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.108 3.892 3 N -0.375 5.375 4 O 0.070 5.930 5 C 0.311 3.689 6 N -0.799 5.799 7 C -0.327 4.327 8 C 0.557 3.443 9 O -0.493 6.493 10 O -0.346 6.346 11 C 0.070 3.930 12 C -0.101 4.101 13 C -0.084 4.084 14 S -0.206 6.206 15 C -0.505 4.505 16 H 0.089 0.911 17 C 0.092 3.908 18 N -0.880 5.880 19 Si 0.861 3.139 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.238 1.238 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.417 0.583 27 H 0.429 0.571 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.256 22.196 -8.566 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 N -0.094 5.094 4 O 0.023 5.977 5 C 0.139 3.861 6 N -0.352 5.352 7 C -0.342 4.342 8 C 0.398 3.602 9 O -0.380 6.380 10 O -0.263 6.263 11 C -0.005 4.005 12 C -0.139 4.139 13 C -0.233 4.233 14 S 0.022 5.978 15 C -0.652 4.652 16 H 0.107 0.893 17 C -0.116 4.116 18 N -0.517 5.517 19 Si 0.686 3.314 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.162 1.162 23 H 0.106 0.894 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.248 0.752 27 H 0.264 0.736 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.080 23.648 -7.784 26.174 hybrid contribution 0.174 -1.860 -0.471 1.927 sum 8.255 21.787 -8.255 24.718 Atomic orbital electron populations 1.20305 0.85235 1.04479 1.04043 1.22971 0.98405 0.86293 0.97652 1.73430 0.87579 1.22076 1.26272 1.84837 1.22382 1.19089 1.71421 1.20858 0.87865 0.84522 0.92820 1.41025 1.03210 1.09836 1.81090 1.19067 0.91452 0.92444 1.31201 1.19383 0.73558 0.85258 0.81969 1.90907 1.45945 1.68383 1.32786 1.86677 1.79305 1.26823 1.33459 1.23304 1.01204 0.76417 0.99594 1.21331 1.03802 0.94754 0.94057 1.22947 1.03682 0.95640 1.01019 1.84181 1.91804 1.13792 1.08044 1.22116 1.53964 0.91697 0.97470 0.89289 1.24793 0.93335 0.94066 0.99437 1.69936 1.44894 1.03250 1.33607 0.86674 0.80530 0.79897 0.84264 1.19297 1.20035 1.16154 0.89409 0.89698 0.89627 0.75191 0.73622 0.90741 0.90877 0.90275 0.90169 0.90946 0.90964 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.40 36.00 0.37 -0.32 16 2 C 0.11 1.19 7.37 -81.75 -0.60 0.58 16 3 N -0.37 -4.27 11.97 33.91 0.41 -3.86 16 4 O 0.07 0.70 11.16 17.23 0.19 0.89 16 5 C 0.31 2.83 8.77 -14.58 -0.13 2.70 16 6 N -0.80 -4.12 8.99 31.20 0.28 -3.84 16 7 C -0.33 -3.73 6.24 -104.23 -0.65 -4.38 16 8 C 0.56 7.18 7.76 34.06 0.26 7.44 16 9 O -0.49 -7.48 16.91 -19.37 -0.33 -7.81 16 10 O -0.35 -4.50 10.23 -40.93 -0.42 -4.92 16 11 C 0.07 0.91 5.48 37.15 0.20 1.11 16 12 C -0.10 -1.48 5.60 -26.74 -0.15 -1.63 16 13 C -0.08 -1.55 5.67 37.16 0.21 -1.34 16 14 S -0.21 -4.87 19.41 -107.50 -2.09 -6.96 16 15 C -0.50 -14.37 10.04 30.94 0.31 -14.06 16 16 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 17 C 0.09 2.66 5.50 -17.43 -0.10 2.56 16 18 N -0.88 -26.40 13.97 55.49 0.78 -25.62 16 19 Si 0.86 21.15 27.74 -169.99 -4.71 16.43 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.24 -5.68 6.74 56.52 0.38 -5.30 16 23 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.42 0.89 8.95 -40.82 -0.37 0.52 16 27 H 0.43 1.95 8.90 -40.82 -0.36 1.59 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 33 H 0.07 1.31 8.14 -51.91 -0.42 0.89 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -33.80 321.61 -5.42 -39.22 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -4.11 Total: -1.05 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -0.26 Total: -7.33 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 1.46 Total: -33.32 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.55 Total: -11.84 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.71 Total: 16.43 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -2.09 Total: -6.96 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.80 -5.42 -39.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805354376.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.014 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds