Wall clock time and date at job start Tue Mar 31 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99810 * 2 1 4 4 H 1.48504 * 109.47106 * 270.00240 * 3 2 1 5 5 H 1.48502 * 109.47001 * 29.99685 * 3 2 1 6 6 H 1.48492 * 109.47359 * 149.99797 * 3 2 1 7 7 C 1.37870 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00518 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99811 * 0.02562 * 7 2 1 10 10 O 1.42903 * 109.47051 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99899 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46870 * 179.97438 * 11 10 9 13 13 O 1.45199 * 109.47429 * 64.99952 * 12 11 10 14 14 C 1.34709 * 117.00316 * 179.97438 * 13 12 11 15 15 O 1.21473 * 119.99634 * 0.02562 * 14 13 12 16 16 C 1.47738 * 120.00034 * 179.97438 * 14 13 12 17 17 C 1.39605 * 120.12225 * 180.02562 * 16 14 13 18 18 C 1.38189 * 119.86877 * 179.97438 * 17 16 14 19 19 F 1.35102 * 119.93610 * 179.97438 * 18 17 16 20 20 C 1.38539 * 120.12778 * 0.02562 * 18 17 16 21 21 C 1.38534 * 120.25333 * 359.95834 * 20 18 17 22 22 F 1.35108 * 119.93549 * 180.02562 * 21 20 18 23 23 C 1.38193 * 120.13018 * 0.04564 * 21 20 18 24 24 H 0.96994 * 120.00482 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47311 * 59.99885 * 9 7 2 26 26 H 1.08996 * 109.46712 * 299.99649 * 9 7 2 27 27 H 1.09004 * 109.46932 * 59.99908 * 11 10 9 28 28 H 1.08999 * 109.46783 * 299.99436 * 11 10 9 29 29 H 1.09000 * 109.47506 * 304.99702 * 12 11 10 30 30 H 1.09000 * 109.46911 * 185.00111 * 12 11 10 31 31 H 1.07997 * 120.06855 * 359.70007 * 17 16 14 32 32 H 1.08005 * 119.87601 * 179.97438 * 20 18 17 33 33 H 1.08001 * 120.06681 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0017 11 6 1.5653 -4.8754 0.0013 12 6 2.6483 -5.9560 0.0020 13 8 3.3988 -5.8885 1.2432 14 6 4.3964 -6.7793 1.4041 15 8 4.6332 -7.5901 0.5311 16 6 5.2031 -6.7694 2.6417 17 6 6.2379 -7.6911 2.8109 18 6 6.9895 -7.6769 3.9704 19 9 7.9909 -8.5686 4.1357 20 6 6.7175 -6.7506 4.9641 21 6 5.6920 -5.8334 4.8015 22 9 5.4326 -4.9327 5.7745 23 6 4.9337 -5.8383 3.6462 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 0.9461 -4.9826 -0.8894 28 1 0.9443 -4.9823 0.8906 29 1 3.3225 -5.7955 -0.8393 30 1 2.1825 -6.9374 -0.0880 31 1 6.4478 -8.4167 2.0390 32 1 7.3072 -6.7434 5.8688 33 1 4.1342 -5.1230 3.5207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815178521.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:13 Heat of formation + Delta-G solvation = -198.655891 kcal Electronic energy + Delta-G solvation = -21258.154939 eV Core-core repulsion = 17306.370857 eV Total energy + Delta-G solvation = -3951.784083 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.41152 -49.30239 -40.69114 -38.78454 -37.11231 -36.13984 -32.81998 -31.94919 -30.82273 -30.05025 -27.01671 -25.26507 -23.26658 -22.55865 -22.22092 -21.22489 -18.91916 -17.83711 -17.01399 -16.80266 -16.69979 -16.56791 -16.29569 -16.07215 -15.90981 -15.65195 -15.38141 -14.71232 -14.66208 -14.37447 -13.73931 -13.21768 -13.17064 -12.77889 -12.37233 -12.26624 -12.23307 -12.00525 -11.50025 -11.03131 -10.90094 -10.84170 -10.65385 -10.49515 -10.08907 -9.61168 -9.21401 -9.16921 -8.92436 -8.25880 -6.15022 -4.16995 0.03697 0.52538 2.12109 2.40674 3.09594 3.28470 3.33697 3.39029 3.43298 3.86905 4.16550 4.29082 4.34586 4.53279 4.59674 4.66844 5.04805 5.12708 5.21788 5.29643 5.37262 5.45566 5.47806 5.68595 5.78624 5.86954 5.99034 6.23852 6.36069 7.00511 7.35307 7.58352 7.74706 8.08485 8.47162 8.95347 9.48102 10.96485 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.003486 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.588862 B = 8029.809656 C = 9119.588592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.061 3.939 12 C 0.075 3.925 13 O -0.332 6.332 14 C 0.510 3.490 15 O -0.502 6.502 16 C -0.062 4.062 17 C -0.103 4.103 18 C 0.119 3.881 19 F -0.126 7.126 20 C -0.161 4.161 21 C 0.123 3.877 22 F -0.123 7.123 23 C -0.102 4.102 24 H 0.265 0.735 25 H 0.006 0.994 26 H 0.008 0.992 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.290 -16.194 8.594 21.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.017 4.017 12 C 0.002 3.998 13 O -0.248 6.248 14 C 0.354 3.646 15 O -0.392 6.392 16 C -0.063 4.063 17 C -0.122 4.122 18 C 0.100 3.900 19 F -0.104 7.104 20 C -0.181 4.181 21 C 0.104 3.896 22 F -0.101 7.101 23 C -0.121 4.121 24 H 0.074 0.926 25 H 0.024 0.976 26 H 0.025 0.975 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.386 -16.250 8.353 21.017 hybrid contribution 0.135 0.830 0.081 0.844 sum 10.520 -15.421 8.434 20.484 Atomic orbital electron populations 1.69951 1.06113 1.27260 1.50436 1.24941 0.94980 0.99459 0.95050 0.86331 0.79697 0.82184 0.78266 1.20442 1.21035 1.19577 1.21043 0.94107 0.89276 1.51007 0.91493 1.20244 0.88716 0.83441 0.95548 1.87919 1.35361 1.12600 1.95246 1.22338 0.93147 0.85442 1.00781 1.23328 0.93652 0.99140 0.83665 1.86631 1.42922 1.53166 1.42047 1.20763 0.79123 0.78625 0.86096 1.90844 1.67838 1.37893 1.42598 1.18666 0.96804 0.97661 0.93206 1.21250 0.94081 0.99544 0.97374 1.16940 0.88422 0.90125 0.94526 1.91567 1.57707 1.65563 1.95600 1.21303 0.99548 0.95977 1.01225 1.17106 0.96027 0.89599 0.86912 1.91595 1.93147 1.64807 1.60541 1.21710 1.00247 0.99011 0.91164 0.92590 0.97571 0.97453 0.91681 0.93050 0.90106 0.90044 0.82431 0.82714 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.99 9.43 -34.44 -0.32 -15.31 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.19 5.20 5.69 36.01 0.20 5.40 16 10 O -0.39 -9.14 10.30 -38.80 -0.40 -9.54 16 11 C 0.06 1.04 6.33 37.16 0.24 1.28 16 12 C 0.08 1.11 5.85 37.16 0.22 1.33 16 13 O -0.33 -5.11 9.44 -43.30 -0.41 -5.52 16 14 C 0.51 7.12 7.90 34.61 0.27 7.39 16 15 O -0.50 -7.74 16.13 -19.25 -0.31 -8.05 16 16 C -0.06 -0.71 5.87 -105.00 -0.62 -1.33 16 17 C -0.10 -1.02 9.57 -39.09 -0.37 -1.40 16 18 C 0.12 1.07 7.29 -39.49 -0.29 0.78 16 19 F -0.13 -1.15 17.26 2.25 0.04 -1.11 16 20 C -0.16 -1.35 10.00 -39.36 -0.39 -1.74 16 21 C 0.12 1.22 7.29 -39.49 -0.29 0.93 16 22 F -0.12 -1.33 17.26 2.25 0.04 -1.29 16 23 C -0.10 -1.12 9.59 -39.09 -0.38 -1.49 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.16 1.45 7.65 -52.49 -0.40 1.05 16 32 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.17 1.88 7.61 -52.49 -0.40 1.48 16 LS Contribution 313.09 15.07 4.72 4.72 Total: -1.00 -31.70 313.09 -5.74 -37.44 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: -3.30 Total: -4.85 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.83 Total: -2.62 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -1.12 Total: -23.11 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.08 Total: -2.40 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.70 -5.74 -37.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815178521.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.218 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds