Wall clock time and date at job start Tue Mar 31 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31438 * 1 3 3 Si 1.86804 * 120.00068 * 2 1 4 4 H 1.48500 * 109.47510 * 270.00201 * 3 2 1 5 5 H 1.48506 * 109.46809 * 30.00491 * 3 2 1 6 6 H 1.48498 * 109.47202 * 150.00091 * 3 2 1 7 7 C 1.38758 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99869 * 359.97438 * 7 2 1 9 9 O 1.34921 * 119.99985 * 180.02562 * 7 2 1 10 10 C 1.34313 * 116.99557 * 179.97438 * 9 7 2 11 11 O 1.21211 * 120.00176 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99825 * 179.97438 * 10 9 7 13 13 C 1.52995 * 109.47250 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47250 * 179.97438 * 13 12 10 15 15 C 1.38286 * 119.97364 * 270.02058 * 14 13 12 16 16 C 1.38248 * 120.11040 * 180.02562 * 15 14 13 17 17 C 1.38159 * 120.05757 * 359.67977 * 16 15 14 18 18 C 1.38718 * 119.93971 * 0.57604 * 17 16 15 19 19 O 1.35901 * 120.05211 * 179.71786 * 18 17 16 20 20 C 1.42903 * 117.00336 * 359.72988 * 19 18 17 21 21 F 1.39904 * 109.46926 * 59.99533 * 20 19 18 22 22 F 1.39901 * 109.46899 * 300.00077 * 20 19 18 23 23 C 1.38125 * 119.97229 * 90.00079 * 14 13 12 24 24 H 0.97004 * 120.00088 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.46888 * 60.00039 * 12 10 9 26 26 H 1.08998 * 109.47358 * 300.00210 * 12 10 9 27 27 H 1.09006 * 109.47005 * 60.00225 * 13 12 10 28 28 H 1.08998 * 109.47012 * 300.00300 * 13 12 10 29 29 H 1.08005 * 119.94276 * 0.02562 * 15 14 13 30 30 H 1.08002 * 119.97000 * 179.97438 * 16 15 14 31 31 H 1.07998 * 120.03496 * 180.29523 * 17 16 15 32 32 H 1.09002 * 109.47382 * 179.97438 * 20 19 18 33 33 H 1.08007 * 120.02345 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4959 2.0465 -1.4000 5 1 1.4458 2.6527 0.7002 6 1 3.5460 1.4402 0.7000 7 6 2.0082 -1.2016 -0.0005 8 1 1.4682 -2.1369 -0.0005 9 8 3.3574 -1.2016 0.0000 10 6 3.9671 -2.3984 0.0000 11 8 3.3070 -3.4149 -0.0010 12 6 5.4721 -2.4772 -0.0001 13 6 5.9059 -3.9444 -0.0007 14 6 7.4108 -4.0233 -0.0014 15 6 8.1003 -4.0586 -1.1996 16 6 9.4809 -4.1315 -1.2035 17 6 10.1755 -4.1626 -0.0097 18 6 9.4860 -4.1326 1.1936 19 8 10.1667 -4.1689 2.3692 20 6 11.5917 -4.2436 2.2918 21 9 12.0808 -3.1251 1.6084 22 9 11.9612 -5.4065 1.6075 23 6 8.1004 -4.0598 1.1948 24 1 -0.4850 0.8401 0.0004 25 1 5.8618 -1.9832 0.8899 26 1 5.8618 -1.9831 -0.8900 27 1 5.5162 -4.4381 -0.8910 28 1 5.5161 -4.4389 0.8890 29 1 7.5593 -4.0292 -2.1339 30 1 10.0170 -4.1594 -2.1406 31 1 11.2543 -4.2147 -0.0132 32 1 12.0097 -4.2655 3.2983 33 1 7.5615 -4.0323 2.1304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820951719.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:45 Heat of formation + Delta-G solvation = -229.089827 kcal Electronic energy + Delta-G solvation = -21484.689610 eV Core-core repulsion = 17531.585813 eV Total energy + Delta-G solvation = -3953.103797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.30177 -48.30022 -41.29459 -40.92636 -38.79690 -37.50177 -34.85383 -34.47998 -31.62944 -30.82010 -27.90778 -27.04541 -25.62168 -23.61031 -22.52112 -21.36137 -20.14034 -19.63261 -19.07632 -18.87308 -18.54060 -17.30888 -17.11010 -16.92153 -16.65831 -15.97751 -15.88997 -15.61470 -14.97999 -14.94795 -14.64054 -14.60484 -14.52898 -14.22305 -14.03741 -13.86548 -13.55112 -13.25453 -13.15422 -12.57772 -12.46389 -12.36375 -12.23851 -12.02974 -11.87766 -11.83601 -11.12392 -10.83038 -9.88695 -9.42045 -8.54292 -6.41289 0.21877 0.34669 1.30920 1.35000 1.54306 1.59703 1.62775 2.27753 2.41248 2.56624 2.71855 2.91843 3.52270 3.70966 3.73345 3.83498 3.98060 3.99417 4.12625 4.31988 4.34246 4.47830 4.52353 4.68943 4.88337 4.98097 5.12737 5.19044 5.40034 5.49707 5.53086 5.63029 5.90246 6.07831 6.55632 6.83599 7.60653 8.58897 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.029733 B = 0.003035 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.488264 B = 9223.687721 C = 9580.664833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.985 3.015 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.249 1.249 7 C -0.410 4.410 8 H 0.056 0.944 9 O -0.261 6.261 10 C 0.409 3.591 11 O -0.576 6.576 12 C -0.086 4.086 13 C -0.059 4.059 14 C -0.047 4.047 15 C -0.141 4.141 16 C -0.080 4.080 17 C -0.203 4.203 18 C 0.093 3.907 19 O -0.331 6.331 20 C 0.406 3.594 21 F -0.210 7.210 22 F -0.210 7.210 23 C -0.142 4.142 24 H 0.289 0.711 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.137 0.863 32 H 0.233 0.767 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.592 -5.747 2.610 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.173 1.173 7 C -0.486 4.486 8 H 0.074 0.926 9 O -0.170 6.170 10 C 0.256 3.744 11 O -0.472 6.472 12 C -0.124 4.124 13 C -0.097 4.097 14 C -0.047 4.047 15 C -0.159 4.159 16 C -0.098 4.098 17 C -0.221 4.221 18 C 0.050 3.950 19 O -0.249 6.249 20 C 0.317 3.683 21 F -0.191 7.191 22 F -0.192 7.192 23 C -0.161 4.161 24 H 0.099 0.901 25 H 0.135 0.865 26 H 0.140 0.860 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.161 0.839 30 H 0.171 0.829 31 H 0.155 0.845 32 H 0.249 0.751 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 28.172 -5.893 2.767 28.914 hybrid contribution -0.380 0.173 -0.211 0.468 sum 27.791 -5.719 2.557 28.489 Atomic orbital electron populations 1.69711 1.07664 1.30220 1.48367 1.25612 0.95988 1.02835 0.94147 0.85053 0.79006 0.75635 0.79863 1.18334 1.19105 1.17281 1.20330 0.77968 0.95721 1.54563 0.92569 1.83542 1.21855 1.33148 1.78466 1.24530 0.93246 0.81167 0.75436 1.90585 1.68796 1.37307 1.50516 1.21274 0.84454 0.99422 1.07236 1.20277 0.90462 0.94472 1.04474 1.19576 0.94529 0.97762 0.92833 1.21344 0.94587 1.01846 0.98173 1.21241 0.93953 0.96363 0.98239 1.21690 1.00977 1.07111 0.92351 1.18956 0.92031 0.99516 0.84499 1.86614 1.19864 1.88367 1.30035 1.24247 0.78054 0.70899 0.95119 1.93077 1.87767 1.54510 1.83786 1.93075 1.91215 1.51100 1.83762 1.20467 0.90765 1.05455 0.99399 0.90108 0.86508 0.85989 0.90102 0.90742 0.83862 0.82863 0.84488 0.75111 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.18 13.96 21.63 0.30 -55.88 16 2 C 0.01 0.81 5.49 84.88 0.47 1.27 16 3 Si 0.99 43.73 28.62 68.60 1.96 45.70 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.25 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.41 -25.48 10.10 67.94 0.69 -24.79 16 8 H 0.06 3.97 7.09 -2.91 -0.02 3.95 16 9 O -0.26 -13.90 8.58 14.84 0.13 -13.77 16 10 C 0.41 19.00 7.91 71.24 0.56 19.57 16 11 O -0.58 -31.08 15.22 20.77 0.32 -30.77 16 12 C -0.09 -2.65 5.79 29.85 0.17 -2.48 16 13 C -0.06 -1.63 4.63 29.85 0.14 -1.49 16 14 C -0.05 -1.09 5.13 -19.88 -0.10 -1.19 16 15 C -0.14 -2.85 9.70 22.28 0.22 -2.63 16 16 C -0.08 -1.46 10.04 22.25 0.22 -1.24 16 17 C -0.20 -4.07 8.26 22.37 0.18 -3.88 16 18 C 0.09 2.04 6.48 22.51 0.15 2.19 16 19 O -0.33 -6.10 10.43 -92.43 -0.96 -7.06 16 20 C 0.41 4.66 5.98 113.37 0.68 5.33 16 21 F -0.21 -3.17 15.56 44.97 0.70 -2.47 16 22 F -0.21 -3.13 15.60 44.97 0.70 -2.43 16 23 C -0.14 -3.29 9.64 22.36 0.22 -3.07 16 24 H 0.29 15.88 8.31 -92.71 -0.77 15.11 16 25 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 26 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 27 H 0.08 2.29 8.04 -2.38 -0.02 2.27 16 28 H 0.07 2.18 8.04 -2.39 -0.02 2.16 16 29 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.14 2.49 5.10 -2.91 -0.01 2.48 16 32 H 0.23 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -77.77 303.62 7.88 -69.89 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.15 Total: 9.21 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 3.59 Total: -12.41 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.30 Total: -55.88 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -0.52 Total: -51.60 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 1.40 Total: -4.90 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.96 Total: 45.70 kcal Total: -77.77 7.88 -69.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820951719.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.203 kcal (2) G-P(sol) polarization free energy of solvation -77.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds