Wall clock time and date at job start Tue Mar 31 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.50359 * 299.92133 * 9 7 2 11 11 C 1.53122 * 109.50127 * 59.99918 * 9 7 2 12 12 C 1.53114 * 109.15993 * 177.59814 * 11 9 7 13 13 C 1.53044 * 109.27620 * 302.34480 * 12 11 9 14 14 N 1.46844 * 109.52351 * 59.18200 * 13 12 11 15 15 C 1.46900 * 110.99734 * 174.16205 * 14 13 12 16 16 C 1.50697 * 109.47358 * 293.94784 * 15 14 13 17 17 C 1.33570 * 126.01697 * 89.71255 * 16 15 14 18 18 N 1.31864 * 114.50878 * 179.85500 * 17 16 15 19 19 C 1.29136 * 117.07923 * 0.45421 * 18 17 16 20 20 Cl 1.73599 * 124.92733 * 179.71363 * 19 18 17 21 21 S 1.70974 * 110.15173 * 359.75222 * 19 18 17 22 22 C 1.46847 * 111.19552 * 298.25380 * 14 13 12 23 23 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.52191 * 297.49898 * 11 9 7 25 25 H 1.08993 * 109.52467 * 57.62719 * 11 9 7 26 26 H 1.09005 * 109.50655 * 62.28356 * 12 11 9 27 27 H 1.08999 * 109.50829 * 182.36016 * 12 11 9 28 28 H 1.09006 * 109.46027 * 179.19321 * 13 12 11 29 29 H 1.08998 * 109.45998 * 299.16105 * 13 12 11 30 30 H 1.09006 * 109.47120 * 53.95249 * 15 14 13 31 31 H 1.09003 * 109.46729 * 173.94917 * 15 14 13 32 32 H 1.07997 * 122.74510 * 0.04570 * 17 16 15 33 33 H 1.09000 * 109.46702 * 301.73463 * 22 14 13 34 34 H 1.09003 * 109.46567 * 181.76031 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8759 -0.6809 -0.8900 11 6 4.0223 -0.4731 1.2507 12 6 5.5522 -0.5300 1.2741 13 6 6.0040 -1.9918 1.2413 14 7 5.4909 -2.6370 0.0261 15 6 6.0190 -4.0011 -0.1087 16 6 7.5078 -3.9434 -0.3349 17 6 8.4473 -3.9500 0.6144 18 7 9.6841 -3.8947 0.1605 19 6 9.8380 -3.8327 -1.1202 20 17 11.3688 -3.7457 -1.9342 21 16 8.3154 -3.8476 -1.8978 22 6 4.0226 -2.6366 0.0043 23 1 -0.4850 0.8400 -0.0004 24 1 3.6967 0.5670 1.2301 25 1 3.6251 -0.9616 2.1404 26 1 5.9492 -0.0068 0.4040 27 1 5.9203 -0.0549 2.1834 28 1 7.0932 -2.0354 1.2434 29 1 5.6183 -2.5109 2.1187 30 1 5.8113 -4.5628 0.8021 31 1 5.5415 -4.4934 -0.9560 32 1 8.2132 -3.9999 1.6676 33 1 3.6461 -3.1526 0.8875 34 1 3.6725 -3.1485 -0.8921 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852319260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:09 Heat of formation + Delta-G solvation = 24.102885 kcal Electronic energy + Delta-G solvation = -18143.967845 eV Core-core repulsion = 15228.685610 eV Total energy + Delta-G solvation = -2915.282235 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.060 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.96284 -39.80250 -37.97290 -35.91744 -34.16440 -32.04957 -31.54028 -27.82487 -26.83865 -25.60358 -23.71875 -22.79610 -21.28259 -20.46135 -19.36939 -18.80056 -17.32779 -17.03695 -16.33519 -15.97740 -15.67582 -15.36146 -15.24577 -15.06534 -14.79721 -14.41476 -13.80683 -13.70079 -13.22744 -12.92656 -12.86148 -12.70892 -12.51488 -12.25869 -12.18941 -11.88120 -11.74803 -11.43375 -11.00691 -10.88312 -10.77908 -10.61964 -10.37417 -9.88414 -9.22166 -8.28959 -6.31790 -0.55100 -0.27967 0.57750 0.85454 1.30846 1.37495 1.47777 1.60225 2.33672 3.04867 3.07579 3.54144 3.78671 4.00425 4.04086 4.16255 4.29769 4.46718 4.55900 4.61335 4.71568 4.78662 4.82895 4.94869 4.97544 5.04980 5.15883 5.23910 5.46618 5.64574 5.74403 6.12253 6.17882 6.35185 6.42047 6.76202 7.34194 8.87727 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.033371 B = 0.003799 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.843185 B = 7368.779684 C = 7475.917086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.014 3.986 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.302 1.302 6 H -0.249 1.249 7 C -0.516 4.516 8 H 0.037 0.963 9 C 0.019 3.981 10 H 0.024 0.976 11 C -0.122 4.122 12 C -0.114 4.114 13 C 0.061 3.939 14 N -0.546 5.546 15 C 0.128 3.872 16 C -0.200 4.200 17 C 0.043 3.957 18 N -0.483 5.483 19 C 0.042 3.958 20 Cl 0.027 6.973 21 S 0.242 5.758 22 C 0.090 3.910 23 H 0.265 0.735 24 H 0.031 0.969 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.198 0.802 33 H 0.027 0.973 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.017 -8.475 -1.400 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.183 4.183 3 Si 0.776 3.224 4 H -0.195 1.195 5 H -0.230 1.230 6 H -0.173 1.173 7 C -0.554 4.554 8 H 0.056 0.944 9 C 0.000 4.000 10 H 0.042 0.958 11 C -0.160 4.160 12 C -0.152 4.152 13 C -0.067 4.067 14 N -0.271 5.271 15 C -0.002 4.002 16 C -0.322 4.322 17 C -0.109 4.109 18 N -0.201 5.201 19 C -0.260 4.260 20 Cl 0.055 6.945 21 S 0.493 5.507 22 C -0.037 4.037 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.215 0.785 33 H 0.045 0.955 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 21.391 -8.076 -2.601 23.012 hybrid contribution -0.590 0.456 1.530 1.702 sum 20.800 -7.620 -1.071 22.178 Atomic orbital electron populations 1.70039 1.08130 1.27905 1.53009 1.25794 0.95312 1.02783 0.94378 0.85847 0.79056 0.79021 0.78477 1.19514 1.22995 1.17348 1.21338 0.91434 0.93013 1.49626 0.94431 1.19080 0.92858 0.93805 0.94243 0.95824 1.21925 0.95607 0.98810 0.99623 1.21611 0.94827 0.96811 1.01977 1.22103 1.00006 0.94278 0.90285 1.61928 1.08503 1.17406 1.39230 1.20480 0.86234 0.90201 1.03266 1.26132 1.01430 1.09451 0.95226 1.21786 0.84163 1.02807 1.02145 1.66016 1.25714 1.16025 1.12305 1.27217 0.95287 1.09872 0.93606 1.98421 1.25230 1.96429 1.74453 1.84156 0.93875 1.64978 1.07716 1.21796 0.84841 0.97200 0.99873 0.92645 0.95042 0.92938 0.92380 0.90238 0.89645 0.94088 0.90615 0.88433 0.78532 0.95464 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 2 C 0.01 0.82 5.45 84.65 0.46 1.28 16 3 Si 0.95 45.12 24.35 68.60 1.67 46.79 16 4 H -0.27 -12.21 6.89 99.48 0.69 -11.52 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.25 -11.17 6.53 99.48 0.65 -10.52 16 7 C -0.52 -28.55 9.15 25.60 0.23 -28.32 16 8 H 0.04 2.28 7.99 -2.92 -0.02 2.25 16 9 C 0.02 0.86 1.85 -11.48 -0.02 0.84 16 10 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 11 C -0.12 -4.89 4.73 30.67 0.15 -4.74 16 12 C -0.11 -3.56 6.09 30.65 0.19 -3.37 16 13 C 0.06 1.62 5.26 86.33 0.45 2.07 16 14 N -0.55 -15.68 4.65 -900.90 -4.19 -19.87 16 15 C 0.13 2.76 5.50 85.56 0.47 3.23 16 16 C -0.20 -4.10 5.52 24.63 0.14 -3.97 16 17 C 0.04 0.87 9.69 83.63 0.81 1.68 16 18 N -0.48 -11.42 10.55 -194.44 -2.05 -13.47 16 19 C 0.04 0.90 8.03 130.64 1.05 1.95 16 20 Cl 0.03 0.51 29.33 -2.72 -0.08 0.43 16 21 S 0.24 4.72 23.22 -56.49 -1.31 3.41 16 22 C 0.09 3.25 4.68 86.33 0.40 3.65 16 23 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 24 H 0.03 1.35 3.35 -2.38 -0.01 1.34 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.09 1.98 5.97 -2.38 -0.01 1.97 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.42 8.12 -2.38 -0.02 1.40 16 31 H 0.10 1.98 7.98 -2.39 -0.02 1.96 16 32 H 0.20 3.18 8.03 -2.91 -0.02 3.16 16 33 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 2.42 8.01 -2.39 -0.02 2.40 16 Total: -1.00 -64.23 298.22 -0.30 -64.53 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.03 Total: 2.51 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 4.33 Total: -25.69 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -5.94 Total: -91.99 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.67 Total: 46.79 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.31 Total: 3.41 kcal Atomic # 17 Polarization: 0.51 SS G_CDS: -0.08 Total: 0.43 kcal Total: -64.23 -0.30 -64.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.636 kcal (2) G-P(sol) polarization free energy of solvation -64.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds