Wall clock time and date at job start Tue Mar 31 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99920 * 2 1 4 4 H 1.48496 * 109.47462 * 274.98909 * 3 2 1 5 5 H 1.48497 * 109.47160 * 34.99165 * 3 2 1 6 6 H 1.48507 * 109.47042 * 154.99062 * 3 2 1 7 7 C 1.37878 * 119.99795 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99727 * 189.55439 * 7 2 1 9 9 C 1.50701 * 119.99964 * 9.55533 * 7 2 1 10 10 H 1.08997 * 109.50133 * 305.50952 * 9 7 2 11 11 C 1.53116 * 109.50421 * 65.63158 * 9 7 2 12 12 C 1.53117 * 109.16221 * 177.59511 * 11 9 7 13 13 C 1.53038 * 109.27549 * 302.34244 * 12 11 9 14 14 N 1.46844 * 109.52284 * 59.18006 * 13 12 11 15 15 C 1.46904 * 110.99933 * 174.15785 * 14 13 12 16 16 C 1.50696 * 109.47229 * 294.20801 * 15 14 13 17 17 C 1.33573 * 122.74000 * 95.00248 * 16 15 14 18 18 S 1.76191 * 107.95425 * 179.97438 * 17 16 15 19 19 C 1.70975 * 90.30032 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 124.92232 * 179.97438 * 19 18 17 21 21 N 1.29140 * 110.15318 * 359.73657 * 19 18 17 22 22 C 1.46850 * 111.20028 * 298.25595 * 14 13 12 23 23 H 0.97003 * 119.99864 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.52072 * 297.49712 * 11 9 7 25 25 H 1.08999 * 109.52723 * 57.68606 * 11 9 7 26 26 H 1.08995 * 109.50389 * 62.28050 * 12 11 9 27 27 H 1.08994 * 109.50425 * 182.40040 * 12 11 9 28 28 H 1.08991 * 109.46534 * 299.16346 * 13 12 11 29 29 H 1.09006 * 109.46460 * 179.19256 * 13 12 11 30 30 H 1.09009 * 109.47201 * 174.20736 * 15 14 13 31 31 H 1.09001 * 109.46669 * 54.21299 * 15 14 13 32 32 H 1.07993 * 126.01815 * 0.02562 * 17 16 15 33 33 H 1.08998 * 109.46226 * 181.75806 * 22 14 13 34 34 H 1.08994 * 109.45858 * 301.72731 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3912 2.1073 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5955 1.4120 0.5919 7 6 2.0045 -1.1941 -0.0005 8 1 3.0733 -1.2006 0.1547 9 6 1.2666 -2.4900 -0.2178 10 1 0.4550 -2.5722 0.5051 11 6 0.6932 -2.5201 -1.6372 12 6 -0.0028 -3.8639 -1.8697 13 6 0.9993 -4.9980 -1.6419 14 7 1.5183 -4.9261 -0.2701 15 6 2.3776 -6.0794 0.0287 16 6 1.5499 -7.3387 0.0184 17 6 1.4411 -8.1228 -1.0575 18 16 0.3907 -9.4745 -0.6403 19 6 0.2020 -8.8517 0.9407 20 17 -0.7559 -9.5840 2.1896 21 7 0.8794 -7.7602 1.0727 22 6 2.2319 -3.6638 -0.0378 23 1 -0.4850 0.8401 0.0004 24 1 -0.0277 -1.7112 -1.7560 25 1 1.5008 -2.3984 -2.3590 26 1 -0.8348 -3.9682 -1.1733 27 1 -0.3762 -3.9082 -2.8927 28 1 1.8240 -4.9010 -2.3478 29 1 0.5032 -5.9568 -1.7927 30 1 2.8303 -5.9502 1.0119 31 1 3.1614 -6.1535 -0.7252 32 1 1.9144 -7.9578 -2.0140 33 1 2.6311 -3.6537 0.9764 34 1 3.0510 -3.5732 -0.7513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852319266.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:13 Heat of formation + Delta-G solvation = 18.878213 kcal Electronic energy + Delta-G solvation = -18123.532198 eV Core-core repulsion = 15208.023404 eV Total energy + Delta-G solvation = -2915.508794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.060 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.17808 -39.50465 -37.95158 -35.63376 -33.77292 -31.88440 -31.18561 -27.96034 -26.87698 -25.66825 -23.59962 -23.11385 -20.95426 -20.36652 -19.18851 -18.38662 -17.22519 -16.93713 -16.53921 -15.85482 -15.58934 -15.22164 -14.95831 -14.83993 -14.49435 -14.24492 -13.82022 -13.50862 -13.06171 -12.82977 -12.81814 -12.70838 -12.52998 -12.44708 -12.14836 -11.90661 -11.72643 -11.38084 -10.89200 -10.76699 -10.67786 -10.47618 -10.40189 -9.80592 -9.10234 -8.11312 -6.20418 -0.49746 -0.24178 0.52152 0.89071 1.41584 1.42378 1.52730 1.56584 2.44052 3.19090 3.19516 3.35824 4.06961 4.16733 4.20083 4.28128 4.39126 4.53702 4.57902 4.63722 4.77378 4.88349 4.91331 4.95076 5.08103 5.16969 5.38614 5.45121 5.64872 5.94168 6.06482 6.16828 6.30622 6.46336 6.57629 6.93264 7.46492 8.97686 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.031395 B = 0.003621 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.649797 B = 7731.128779 C = 7982.842089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.051 3.949 10 H -0.007 1.007 11 C -0.096 4.096 12 C -0.111 4.111 13 C 0.067 3.933 14 N -0.551 5.551 15 C 0.128 3.872 16 C 0.074 3.926 17 C -0.240 4.240 18 S 0.253 5.747 19 C 0.042 3.958 20 Cl 0.023 6.977 21 N -0.481 5.481 22 C 0.086 3.914 23 H 0.260 0.740 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.214 0.786 33 H 0.053 0.947 34 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.080 -21.737 -4.866 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.073 0.927 9 C 0.032 3.968 10 H 0.011 0.989 11 C -0.135 4.135 12 C -0.148 4.148 13 C -0.061 4.061 14 N -0.276 5.276 15 C -0.002 4.002 16 C -0.058 4.058 17 C -0.380 4.380 18 S 0.502 5.498 19 C -0.260 4.260 20 Cl 0.050 6.950 21 N -0.199 5.199 22 C -0.042 4.042 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.231 0.769 33 H 0.072 0.928 34 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.040 -22.335 -4.394 22.787 hybrid contribution 1.055 2.101 0.180 2.358 sum 2.095 -20.234 -4.214 20.774 Atomic orbital electron populations 1.70126 1.07455 1.27161 1.51045 1.25727 0.95480 1.02425 0.94727 0.85639 0.78936 0.79548 0.78127 1.20003 1.21239 1.19037 1.21511 0.94211 0.92394 1.49312 0.92719 1.18592 0.93607 0.91454 0.93166 0.98855 1.21395 0.98344 0.95684 0.98034 1.21569 0.97872 0.94966 1.00441 1.22055 0.97369 0.98730 0.87896 1.61782 1.38140 1.01629 1.26011 1.20581 0.91930 0.85077 1.02597 1.19892 0.99705 0.98538 0.87660 1.27485 1.06721 0.98641 1.05166 1.83673 1.41246 1.22918 1.01914 1.27248 1.03551 0.97754 0.97460 1.98419 1.66977 1.78510 1.51077 1.65710 1.08948 1.12015 1.33209 1.21955 0.94969 0.88152 0.99077 0.93135 0.94568 0.94428 0.94215 0.90708 0.93948 0.89993 0.90202 0.90603 0.76894 0.92832 0.95287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.00 12.19 21.45 0.26 -54.74 16 2 C 0.02 0.87 5.22 84.66 0.44 1.31 16 3 Si 0.95 44.13 29.55 68.60 2.03 46.16 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.54 -30.00 8.48 25.60 0.22 -29.78 16 8 H 0.05 2.98 7.77 -2.91 -0.02 2.95 16 9 C 0.05 2.62 2.13 -11.49 -0.02 2.60 16 10 H -0.01 -0.41 8.09 -2.39 -0.02 -0.43 16 11 C -0.10 -4.54 5.09 30.67 0.16 -4.39 16 12 C -0.11 -4.20 6.09 30.65 0.19 -4.01 16 13 C 0.07 2.12 5.24 86.33 0.45 2.58 16 14 N -0.55 -19.87 4.65 -900.92 -4.19 -24.05 16 15 C 0.13 3.66 5.41 85.56 0.46 4.12 16 16 C 0.07 1.94 5.57 41.49 0.23 2.17 16 17 C -0.24 -4.41 9.72 66.76 0.65 -3.76 16 18 S 0.25 4.13 23.22 -56.49 -1.31 2.82 16 19 C 0.04 1.02 8.03 130.64 1.05 2.07 16 20 Cl 0.02 0.50 29.33 -2.72 -0.08 0.42 16 21 N -0.48 -14.47 10.54 -182.37 -1.92 -16.40 16 22 C 0.09 3.62 4.69 86.33 0.40 4.02 16 23 H 0.26 14.77 8.31 -92.71 -0.77 13.99 16 24 H 0.04 1.94 6.99 -2.39 -0.02 1.92 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 2.22 6.13 -2.38 -0.01 2.20 16 30 H 0.08 2.43 7.99 -2.38 -0.02 2.41 16 31 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 32 H 0.21 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.05 2.31 8.02 -2.39 -0.02 2.29 16 34 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -66.64 306.62 0.11 -66.53 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 1.10 Total: 2.34 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 4.23 Total: -23.07 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -5.85 Total: -95.19 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.31 Total: 2.82 kcal Atomic # 17 Polarization: 0.50 SS G_CDS: -0.08 Total: 0.42 kcal Total: -66.64 0.11 -66.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319266.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.406 kcal (2) G-P(sol) polarization free energy of solvation -66.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds