Wall clock time and date at job start Tue Mar 31 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86793 * 120.00174 * 2 1 4 4 H 1.48509 * 109.46942 * 274.98706 * 3 2 1 5 5 H 1.48496 * 109.47355 * 34.98704 * 3 2 1 6 6 H 1.48495 * 109.47628 * 154.99128 * 3 2 1 7 7 C 1.37886 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99933 * 189.55411 * 7 2 1 9 9 C 1.50700 * 119.99953 * 9.55969 * 7 2 1 10 10 C 1.53120 * 109.52018 * 185.42826 * 9 7 2 11 11 C 1.53038 * 109.27860 * 182.37692 * 10 9 7 12 12 N 1.46850 * 109.52566 * 59.17370 * 11 10 9 13 13 C 1.46892 * 111.00016 * 174.16136 * 12 11 10 14 14 C 1.50705 * 109.47174 * 170.00272 * 13 12 11 15 15 N 1.29054 * 124.90418 * 89.95692 * 14 13 12 16 16 C 1.31821 * 117.11297 * 180.02562 * 15 14 13 17 17 Cl 1.73604 * 122.75866 * 180.02562 * 16 15 14 18 18 C 1.33718 * 114.47829 * 0.02562 * 16 15 14 19 19 S 1.70968 * 124.90938 * 270.00275 * 14 13 12 20 20 C 1.46849 * 111.19865 * 298.26609 * 12 11 10 21 21 C 1.53033 * 109.52661 * 61.73556 * 20 12 11 22 22 H 0.96997 * 120.00462 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.51785 * 305.54859 * 9 7 2 24 24 H 1.09001 * 109.50688 * 62.43180 * 10 9 7 25 25 H 1.08999 * 109.53404 * 302.33436 * 10 9 7 26 26 H 1.09005 * 109.46000 * 299.16455 * 11 10 9 27 27 H 1.08997 * 109.45565 * 179.19239 * 11 10 9 28 28 H 1.09001 * 109.47339 * 50.00375 * 13 12 11 29 29 H 1.09001 * 109.47551 * 290.00536 * 13 12 11 30 30 H 1.08002 * 126.03654 * 180.25968 * 18 16 15 31 31 H 1.08994 * 109.45951 * 181.75698 * 20 12 11 32 32 H 1.09005 * 109.45608 * 301.71989 * 20 12 11 33 33 H 1.08998 * 109.50334 * 180.88146 * 21 20 12 34 34 H 1.09006 * 109.49907 * 60.76310 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.3912 2.1072 -1.3949 5 1 1.5033 2.6199 0.8028 6 1 3.5954 1.4120 0.5919 7 6 2.0044 -1.1941 0.0005 8 1 3.0733 -1.2006 0.1558 9 6 1.2666 -2.4903 -0.2156 10 6 2.2320 -3.6649 -0.0348 11 6 1.4917 -4.9750 -0.3135 12 7 0.9637 -4.9584 -1.6837 13 6 0.3667 -6.2541 -2.0335 14 6 -0.3762 -6.1290 -3.3388 15 7 0.1398 -6.3303 -4.5044 16 6 -0.6524 -6.1770 -5.5468 17 17 -0.1121 -6.4111 -7.1799 18 6 -1.9064 -5.8263 -5.2427 19 16 -2.0240 -5.6987 -3.4894 20 6 -0.0016 -3.8672 -1.8677 21 6 0.6942 -2.5241 -1.6354 22 1 -0.4851 0.8400 -0.0004 23 1 0.4544 -2.5718 0.5067 24 1 2.6103 -3.6711 0.9875 25 1 3.0649 -3.5625 -0.7304 26 1 0.6677 -5.0836 0.3918 27 1 2.1800 -5.8123 -0.1996 28 1 -0.3260 -6.5587 -1.2490 29 1 1.1536 -7.0017 -2.1336 30 1 -2.7072 -5.6561 -5.9472 31 1 -0.3979 -3.9002 -2.8825 32 1 -0.8185 -3.9811 -1.1551 33 1 -0.0263 -1.7153 -1.7566 34 1 1.5026 -2.4035 -2.3566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877190880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:23 Heat of formation + Delta-G solvation = 38.660041 kcal Electronic energy + Delta-G solvation = -18198.161902 eV Core-core repulsion = 15283.510913 eV Total energy + Delta-G solvation = -2914.650989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.060 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.01783 -38.27626 -36.68423 -34.21215 -31.93532 -30.23023 -29.93018 -27.55995 -25.34063 -23.57939 -22.27878 -21.57992 -19.90098 -18.61166 -18.40197 -16.48665 -16.07191 -15.82161 -14.85455 -14.60642 -14.34647 -14.26923 -13.82992 -13.06172 -12.86443 -12.47695 -12.24047 -12.14531 -11.93278 -11.76604 -11.37148 -11.19029 -11.06316 -10.82142 -10.49753 -10.28497 -10.12213 -9.83317 -9.64472 -9.45434 -9.00667 -8.87969 -8.66630 -8.29802 -7.91058 -6.00851 -4.01300 0.42356 0.92491 1.28960 2.14394 2.47038 3.32178 3.39548 3.42773 4.07459 4.34990 4.46437 4.87890 4.96791 5.20395 5.31548 5.49525 5.61370 5.64817 5.76238 5.98213 6.03147 6.22721 6.45172 6.57136 6.77046 7.00790 7.04336 7.29026 7.40060 7.48203 7.52524 7.76913 7.98737 8.03271 8.46880 9.02409 9.61983 11.08469 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.022287 B = 0.004156 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.030497 B = 6736.107492 C = 7114.143975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.046 3.954 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.525 5.525 13 C 0.126 3.874 14 C 0.079 3.921 15 N -0.455 5.455 16 C 0.120 3.880 17 Cl -0.012 7.012 18 C -0.257 4.257 19 S 0.171 5.829 20 C 0.048 3.952 21 C -0.097 4.097 22 H 0.259 0.741 23 H 0.029 0.971 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.186 0.814 31 H 0.053 0.947 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 -14.084 -7.895 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.027 3.973 10 C -0.144 4.144 11 C -0.066 4.066 12 N -0.251 5.251 13 C -0.005 4.005 14 C -0.200 4.200 15 N -0.171 5.171 16 C -0.039 4.039 17 Cl 0.016 6.984 18 C -0.398 4.398 19 S 0.425 5.575 20 C -0.080 4.080 21 C -0.135 4.135 22 H 0.069 0.931 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.203 0.797 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.530 -13.807 -7.674 16.737 hybrid contribution 0.049 0.731 -0.736 1.039 sum -5.481 -13.077 -8.410 16.485 Atomic orbital electron populations 1.69954 1.05930 1.26426 1.50577 1.24950 0.94744 0.98994 0.95064 0.86685 0.80106 0.83882 0.77985 1.20738 1.21398 1.19890 1.21173 0.94095 0.90965 1.48838 0.92663 1.18707 0.94033 0.91935 0.92594 1.21682 0.99285 0.93478 0.99935 1.22189 0.98012 0.99996 0.86440 1.62176 1.35800 1.00926 1.26201 1.20800 0.97072 0.95080 0.87535 1.26838 0.95258 1.00887 0.97052 1.65676 1.36106 1.18150 0.97142 1.20391 0.89409 1.05225 0.88916 1.98390 1.90982 1.95570 1.13444 1.26790 1.01112 1.12122 0.99775 1.84302 1.11317 1.62319 0.99571 1.22493 0.93262 0.93350 0.98899 1.21589 0.99545 0.92432 0.99978 0.93117 0.95282 0.92700 0.92341 0.95256 0.91829 0.92610 0.87752 0.79681 0.92827 0.95332 0.90586 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 12.20 55.43 0.68 -24.60 16 2 C 0.06 1.76 5.23 -17.82 -0.09 1.66 16 3 Si 0.89 21.26 29.55 -169.99 -5.02 16.23 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.95 8.48 -34.44 -0.29 -14.24 16 8 H 0.06 1.50 7.77 -52.48 -0.41 1.09 16 9 C 0.05 1.11 2.03 -91.65 -0.19 0.93 16 10 C -0.11 -2.15 5.32 -26.65 -0.14 -2.29 16 11 C 0.06 1.02 5.42 -3.83 -0.02 1.00 16 12 N -0.52 -9.01 4.80 -236.12 -1.13 -10.14 16 13 C 0.13 1.73 5.86 -4.98 -0.03 1.71 16 14 C 0.08 1.11 5.38 -13.44 -0.07 1.04 16 15 N -0.46 -7.03 10.55 -8.97 -0.09 -7.13 16 16 C 0.12 1.64 7.30 -19.14 -0.14 1.50 16 17 Cl -0.01 -0.14 29.22 -51.86 -1.52 -1.66 16 18 C -0.26 -2.94 11.23 29.15 0.33 -2.62 16 19 S 0.17 2.03 21.48 -107.50 -2.31 -0.28 16 20 C 0.05 0.90 4.67 -3.83 -0.02 0.88 16 21 C -0.10 -2.24 5.19 -26.66 -0.14 -2.38 16 22 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 23 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 28 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.19 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.05 0.98 5.50 -51.93 -0.29 0.69 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.94 7.00 -51.93 -0.36 1.58 16 34 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -29.16 305.00 -10.02 -39.18 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -4.41 Total: -3.39 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -0.80 Total: -12.80 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.55 Total: -41.87 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.31 Total: -0.28 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.52 Total: -1.66 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.16 -10.02 -39.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877190880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.839 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds