Wall clock time and date at job start Tue Mar 31 2020 06:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 5 5 H 1.07997 * 120.00357 * 239.99917 * 4 2 1 6 6 C 1.37876 * 119.99656 * 60.00310 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46949 * 60.00026 * 8 6 4 10 10 H 1.48499 * 109.47367 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47219 * 300.00259 * 8 6 4 12 12 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 13 13 O 1.21283 * 120.00262 * 120.00231 * 12 2 1 14 14 N 1.34777 * 119.99928 * 299.72137 * 12 2 1 15 15 N 1.40105 * 120.00162 * 180.27471 * 14 12 2 16 16 C 1.39911 * 120.00046 * 180.02562 * 15 14 12 17 17 C 1.38811 * 120.06607 * 359.72321 * 16 15 14 18 18 C 1.38160 * 119.95851 * 179.76943 * 17 16 15 19 19 C 1.38373 * 120.09934 * 0.51229 * 18 17 16 20 20 Cl 1.73602 * 119.93228 * 179.76516 * 19 18 17 21 21 C 1.38379 * 120.13530 * 359.74392 * 19 18 17 22 22 C 1.38282 * 120.03263 * 359.97438 * 21 19 18 23 23 F 1.35109 * 120.04445 * 179.97438 * 22 21 19 24 24 H 1.09003 * 109.47307 * 60.00755 * 1 2 3 25 25 H 1.09002 * 109.47575 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47551 * 300.00176 * 1 2 3 27 27 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 29 29 H 0.97000 * 119.99515 * 0.02562 * 15 14 12 30 30 H 1.07999 * 120.02512 * 0.02562 * 17 16 15 31 31 H 1.08000 * 119.95019 * 180.25098 * 18 17 16 32 32 H 1.07995 * 119.98441 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8280 -2.5201 -4.0079 10 1 1.8280 -0.4196 -5.2203 11 1 3.8075 -1.1193 -4.0075 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1194 14 7 1.7112 -0.2466 2.4546 15 7 2.1829 -0.9036 3.5986 16 6 1.8492 -0.4224 4.8693 17 6 1.0557 0.7092 4.9981 18 6 0.7236 1.1796 6.2540 19 6 1.1896 0.5306 7.3837 20 17 0.7746 1.1291 8.9596 21 6 1.9853 -0.5947 7.2600 22 6 2.3163 -1.0737 6.0057 23 9 3.0936 -2.1721 5.8846 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.7090 1.1612 -3.4845 28 1 1.1535 0.5421 2.5436 29 1 2.7408 -1.6921 3.5096 30 1 0.6946 1.2192 4.1172 31 1 0.1028 2.0577 6.3540 32 1 2.3473 -1.0995 8.1434 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885107036.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:17 Heat of formation + Delta-G solvation = -48.012309 kcal Electronic energy + Delta-G solvation = -19511.240860 eV Core-core repulsion = 16026.618299 eV Total energy + Delta-G solvation = -3484.622561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.95130 -41.10610 -40.04068 -37.70141 -36.67910 -35.84916 -33.45231 -32.01957 -31.79916 -28.98153 -27.21688 -25.04579 -23.96000 -23.22102 -21.63032 -19.59013 -18.79519 -18.35906 -18.16981 -17.26727 -16.89198 -16.84360 -16.38789 -16.12686 -16.07775 -15.18086 -14.82916 -14.63183 -14.54239 -14.31072 -13.71776 -13.38757 -13.30325 -12.99975 -12.76016 -12.63723 -12.58796 -12.26561 -12.04263 -11.95025 -11.90726 -11.09702 -10.78801 -10.46323 -10.33959 -10.02255 -8.35110 -8.17863 -6.28250 0.03041 0.08998 0.83980 1.16233 1.43124 1.43180 1.52363 1.72366 2.42575 2.43640 3.09691 3.12650 3.14016 3.59739 3.97895 4.05605 4.16194 4.37474 4.69415 4.71452 4.87855 4.89441 4.92770 4.97436 5.13819 5.38097 5.46578 5.70330 5.72502 5.92004 6.14944 6.30850 6.60294 6.79606 7.34285 7.44310 8.87625 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.037688 B = 0.003215 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.771254 B = 8706.648817 C = 9360.457262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.041 3.959 3 H 0.055 0.945 4 C -0.534 4.534 5 H 0.050 0.950 6 C 0.025 3.975 7 N -0.907 5.907 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.277 1.277 12 C 0.523 3.477 13 O -0.582 6.582 14 N -0.518 5.518 15 N -0.544 5.544 16 C 0.187 3.813 17 C -0.169 4.169 18 C -0.049 4.049 19 C -0.075 4.075 20 Cl -0.059 7.059 21 C -0.086 4.086 22 C 0.017 3.983 23 F -0.146 7.146 24 H 0.076 0.924 25 H 0.024 0.976 26 H 0.058 0.942 27 H 0.267 0.733 28 H 0.433 0.567 29 H 0.429 0.571 30 H 0.154 0.846 31 H 0.168 0.832 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 3.856 20.469 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.018 3.982 3 H 0.073 0.927 4 C -0.573 4.573 5 H 0.068 0.932 6 C -0.175 4.175 7 N -0.545 5.545 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.312 3.688 13 O -0.459 6.459 14 N -0.267 5.267 15 N -0.267 5.267 16 C 0.081 3.919 17 C -0.192 4.192 18 C -0.069 4.069 19 C -0.104 4.104 20 Cl -0.030 7.030 21 C -0.106 4.106 22 C -0.008 4.008 23 F -0.125 7.125 24 H 0.095 0.905 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.278 0.722 29 H 0.271 0.729 30 H 0.171 0.829 31 H 0.186 0.814 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.780 3.381 20.178 20.647 hybrid contribution 0.604 -0.791 -0.873 1.324 sum -2.175 2.590 19.305 19.599 Atomic orbital electron populations 1.21651 0.94458 0.99855 1.02372 1.18782 0.95633 0.96250 0.87521 0.92728 1.21219 1.32143 1.13023 0.90889 0.93220 1.25514 0.95073 0.95678 1.01205 1.69913 1.36783 1.23249 1.24594 0.85674 0.78642 0.78733 0.78971 1.20286 1.19898 1.20297 1.22105 0.78835 0.84403 0.83440 1.90549 1.40027 1.28637 1.86661 1.45204 1.53945 1.30713 0.96864 1.43437 1.56528 1.31493 0.95247 1.18138 0.96507 0.95130 0.82086 1.20587 1.02613 0.96518 0.99499 1.21118 0.97230 0.99506 0.89011 1.20391 1.04407 0.98235 0.87392 1.98371 1.92530 1.87423 1.24714 1.20851 0.97747 0.96009 0.95971 1.16900 1.01987 0.89358 0.92585 1.91469 1.73064 1.51281 1.96662 0.90548 0.95664 0.92365 0.92389 0.72183 0.72878 0.82873 0.81405 0.82064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 8.87 71.98 0.64 -4.59 16 2 C 0.04 1.91 2.64 -12.29 -0.03 1.87 16 3 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 4 C -0.53 -29.58 8.37 25.60 0.21 -29.37 16 5 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 6 C 0.03 1.36 5.30 84.65 0.45 1.81 16 7 N -0.91 -48.45 11.32 21.45 0.24 -48.21 16 8 Si 0.95 43.50 29.54 68.60 2.03 45.52 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 C 0.52 22.59 7.26 87.66 0.64 23.23 16 13 O -0.58 -29.69 15.30 -3.04 -0.05 -29.74 16 14 N -0.52 -16.68 6.11 -173.53 -1.06 -17.74 16 15 N -0.54 -16.47 6.46 -51.19 -0.33 -16.80 16 16 C 0.19 4.56 6.73 38.19 0.26 4.81 16 17 C -0.17 -3.16 9.48 22.39 0.21 -2.95 16 18 C -0.05 -0.76 9.82 22.28 0.22 -0.54 16 19 C -0.08 -1.26 6.32 22.34 0.14 -1.12 16 20 Cl -0.06 -0.89 28.95 -2.72 -0.08 -0.97 16 21 C -0.09 -1.59 9.80 22.31 0.22 -1.38 16 22 C 0.02 0.40 7.31 22.48 0.16 0.56 16 23 F -0.15 -3.85 16.64 44.97 0.75 -3.10 16 24 H 0.08 3.56 6.07 -2.39 -0.01 3.54 16 25 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.85 7.57 -2.39 -0.02 1.83 16 27 H 0.27 13.57 8.31 -92.70 -0.77 12.80 16 28 H 0.43 10.92 6.04 -213.32 -1.29 9.63 16 29 H 0.43 14.33 7.49 -213.32 -1.60 12.73 16 30 H 0.15 2.36 6.20 -2.91 -0.02 2.34 16 31 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -63.20 298.38 2.93 -60.27 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -1.69 Total: 18.41 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 3.12 Total: -7.66 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -1.15 Total: -82.74 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.05 Total: -29.74 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.75 Total: -3.10 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -63.20 2.93 -60.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885107036.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.258 kcal (2) G-P(sol) polarization free energy of solvation -63.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds