Wall clock time and date at job start Tue Mar 31 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46691 * 2 1 4 4 C 1.50696 * 109.46921 * 239.99704 * 2 1 3 5 5 H 1.07997 * 120.00290 * 275.10094 * 4 2 1 6 6 C 1.37879 * 120.00007 * 95.10855 * 4 2 1 7 7 N 1.31511 * 119.99874 * 184.90753 * 6 4 2 8 8 Si 1.86801 * 119.99818 * 4.90062 * 6 4 2 9 9 H 1.48502 * 109.46964 * 84.83020 * 8 6 4 10 10 H 1.48508 * 109.46923 * 204.82492 * 8 6 4 11 11 H 1.48495 * 109.47445 * 324.82464 * 8 6 4 12 12 C 1.50699 * 109.46999 * 119.99818 * 2 1 3 13 13 O 1.21272 * 120.00362 * 120.00768 * 12 2 1 14 14 N 1.34777 * 119.99884 * 299.72368 * 12 2 1 15 15 N 1.40098 * 120.00264 * 180.28275 * 14 12 2 16 16 C 1.39901 * 120.00299 * 180.02562 * 15 14 12 17 17 C 1.38843 * 120.05406 * 359.71812 * 16 15 14 18 18 C 1.38130 * 119.96585 * 179.72687 * 17 16 15 19 19 C 1.38480 * 120.06439 * 0.55250 * 18 17 16 20 20 F 1.35100 * 119.94465 * 179.74997 * 19 18 17 21 21 C 1.38443 * 120.10540 * 359.72253 * 19 18 17 22 22 C 1.38227 * 120.03848 * 0.02562 * 21 19 18 23 23 Cl 1.73603 * 120.03213 * 179.97438 * 22 21 19 24 24 H 1.08999 * 109.46699 * 175.07504 * 1 2 3 25 25 H 1.09001 * 109.46966 * 295.07408 * 1 2 3 26 26 H 1.08997 * 109.46986 * 55.08078 * 1 2 3 27 27 H 0.97001 * 119.99567 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00046 * 0.27624 * 14 12 2 29 29 H 0.96999 * 119.99690 * 359.97438 * 15 14 12 30 30 H 1.08009 * 120.01499 * 359.97438 * 17 16 15 31 31 H 1.08003 * 119.97105 * 180.25442 * 18 17 16 32 32 H 1.08004 * 119.97869 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1340 -1.7856 -1.2295 6 6 2.3624 0.0122 -2.3573 7 7 2.7082 -0.6130 -3.4615 8 14 2.3181 1.8792 -2.3157 9 1 3.6038 2.3930 -1.7788 10 1 2.1126 2.4002 -3.6911 11 1 1.2029 2.3287 -1.4444 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6963 1.1193 14 7 1.7114 -0.2466 2.4545 15 7 2.1832 -0.9035 3.5985 16 6 1.8495 -0.4224 4.8691 17 6 1.0557 0.7094 4.9977 18 6 0.7227 1.1795 6.2532 19 6 1.1893 0.5298 7.3836 20 9 0.8662 0.9947 8.6102 21 6 1.9857 -0.5957 7.2586 22 6 2.3173 -1.0729 6.0044 23 17 3.3166 -2.4838 5.8479 24 1 -0.3633 -1.0239 -0.0882 25 1 -0.3633 0.4355 0.9308 26 1 -0.3633 0.5882 -0.8426 27 1 2.9400 -0.1045 -4.2543 28 1 1.1537 0.5421 2.5435 29 1 2.7406 -1.6923 3.5095 30 1 0.6954 1.2196 4.1166 31 1 0.1017 2.0575 6.3533 32 1 2.3482 -1.1011 8.1416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885138627.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:13 Heat of formation + Delta-G solvation = -28.184960 kcal Electronic energy + Delta-G solvation = -19569.160672 eV Core-core repulsion = 16085.397889 eV Total energy + Delta-G solvation = -3483.762782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.94276 -40.01537 -38.83582 -36.65052 -35.65121 -33.88734 -32.08778 -31.23488 -30.93859 -27.80083 -25.41579 -23.87981 -22.87039 -22.01937 -20.07493 -18.42307 -17.66871 -17.45119 -17.04054 -15.90310 -15.74458 -15.69618 -14.90557 -14.72191 -14.51599 -14.04799 -13.80788 -13.63715 -13.27913 -13.16194 -12.68288 -12.46727 -12.02161 -11.64045 -11.49771 -11.28799 -11.23431 -11.13450 -10.87535 -10.45862 -9.95727 -9.36323 -9.29422 -9.16390 -9.09218 -8.69714 -7.23771 -6.19831 -4.21031 0.77672 1.00785 1.83904 2.11038 3.13985 3.18363 3.21233 3.26066 3.40099 4.12555 4.25437 4.26730 4.33446 4.67896 4.96230 5.05731 5.18873 5.43299 5.55544 5.67868 5.71596 5.88592 5.96504 6.15937 6.32307 6.43628 6.60478 6.87634 7.03174 7.33455 7.56376 7.86167 8.36856 8.86828 8.95382 9.37574 10.92811 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.025438 B = 0.003962 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.465075 B = 7066.311346 C = 7838.711208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.011 3.989 3 H 0.060 0.940 4 C -0.500 4.500 5 H 0.088 0.912 6 C 0.075 3.925 7 N -0.888 5.888 8 Si 0.871 3.129 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.263 1.263 12 C 0.519 3.481 13 O -0.522 6.522 14 N -0.544 5.544 15 N -0.530 5.530 16 C 0.232 3.768 17 C -0.170 4.170 18 C -0.086 4.086 19 C 0.036 3.964 20 F -0.142 7.142 21 C -0.085 4.085 22 C -0.095 4.095 23 Cl -0.056 7.056 24 H 0.056 0.944 25 H 0.026 0.974 26 H 0.060 0.940 27 H 0.267 0.733 28 H 0.416 0.584 29 H 0.436 0.564 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 4.643 20.154 21.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.013 4.013 3 H 0.078 0.922 4 C -0.538 4.538 5 H 0.106 0.894 6 C -0.128 4.128 7 N -0.525 5.525 8 Si 0.698 3.302 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.188 1.188 12 C 0.307 3.693 13 O -0.394 6.394 14 N -0.295 5.295 15 N -0.252 5.252 16 C 0.122 3.878 17 C -0.194 4.194 18 C -0.105 4.105 19 C 0.014 3.986 20 F -0.120 7.120 21 C -0.105 4.105 22 C -0.129 4.129 23 Cl -0.027 7.027 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.257 0.743 29 H 0.281 0.719 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.824 3.866 19.606 20.346 hybrid contribution 0.077 1.021 0.166 1.037 sum -3.747 4.887 19.773 20.709 Atomic orbital electron populations 1.22031 0.96263 1.01866 0.99374 1.19349 0.94364 0.97033 0.90547 0.92207 1.20693 1.43834 0.96252 0.93023 0.89392 1.25026 0.94311 0.98208 0.95281 1.69869 1.44967 1.35929 1.01699 0.86963 0.79097 0.86351 0.77798 1.19947 1.21012 1.18801 1.22521 0.79582 0.85305 0.81851 1.90620 1.36942 1.26221 1.85574 1.45934 1.55214 1.31053 0.97309 1.43744 1.55184 1.31055 0.95185 1.17510 0.94052 0.93053 0.83195 1.20266 1.03616 0.97478 0.98028 1.20944 0.99077 0.99890 0.90613 1.17110 1.03960 0.97239 0.80257 1.91483 1.91614 1.88211 1.40732 1.20674 0.97737 0.95565 0.96563 1.19799 1.05341 0.95216 0.92500 1.98381 1.67874 1.38670 1.97787 0.92531 0.95468 0.92137 0.92273 0.74303 0.71864 0.84453 0.84065 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.12 37.16 0.34 -2.13 16 2 C 0.01 0.23 2.30 -92.92 -0.21 0.01 16 3 H 0.06 1.22 5.29 -51.93 -0.27 0.95 16 4 C -0.50 -13.60 8.36 -34.44 -0.29 -13.88 16 5 H 0.09 2.74 7.61 -52.49 -0.40 2.34 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 8 Si 0.87 19.71 26.99 -169.99 -4.59 15.12 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.26 -5.37 6.82 56.52 0.39 -4.98 16 12 C 0.52 10.68 7.26 -10.99 -0.08 10.60 16 13 O -0.52 -12.89 15.61 5.56 0.09 -12.80 16 14 N -0.54 -8.51 6.08 31.22 0.19 -8.32 16 15 N -0.53 -7.83 6.41 32.45 0.21 -7.62 16 16 C 0.23 2.85 6.72 -83.69 -0.56 2.28 16 17 C -0.17 -1.73 9.48 -39.40 -0.37 -2.11 16 18 C -0.09 -0.79 10.02 -39.53 -0.40 -1.18 16 19 C 0.04 0.37 7.30 -39.42 -0.29 0.08 16 20 F -0.14 -1.51 17.26 2.25 0.04 -1.47 16 21 C -0.09 -0.86 9.80 -39.51 -0.39 -1.25 16 22 C -0.10 -1.10 6.34 -39.32 -0.25 -1.35 16 23 Cl -0.06 -0.65 27.59 -51.86 -1.43 -2.08 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.03 0.37 7.44 -51.93 -0.39 -0.01 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 28 H 0.42 5.10 5.98 -182.60 -1.09 4.01 16 29 H 0.44 6.97 6.67 -182.60 -1.22 5.75 16 30 H 0.14 1.16 6.20 -52.48 -0.33 0.84 16 31 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 297.01 15.07 4.48 4.48 Total: -1.00 -31.09 297.01 -7.38 -38.47 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.54 Total: 6.71 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.60 Total: -6.97 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 1.17 Total: -41.46 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.59 Total: 15.12 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.43 Total: -2.08 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.09 -7.38 -38.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885138627.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.281 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds