Wall clock time and date at job start Tue Mar 31 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46691 * 2 1 4 4 C 1.50696 * 109.46921 * 239.99704 * 2 1 3 5 5 H 1.07997 * 120.00290 * 275.10094 * 4 2 1 6 6 C 1.37879 * 120.00007 * 95.10855 * 4 2 1 7 7 N 1.31511 * 119.99874 * 184.90753 * 6 4 2 8 8 Si 1.86801 * 119.99818 * 4.90062 * 6 4 2 9 9 H 1.48502 * 109.46964 * 84.83020 * 8 6 4 10 10 H 1.48508 * 109.46923 * 204.82492 * 8 6 4 11 11 H 1.48495 * 109.47445 * 324.82464 * 8 6 4 12 12 C 1.50699 * 109.46999 * 119.99818 * 2 1 3 13 13 O 1.21272 * 120.00362 * 120.00768 * 12 2 1 14 14 N 1.34777 * 119.99884 * 299.72368 * 12 2 1 15 15 N 1.40098 * 120.00264 * 180.28275 * 14 12 2 16 16 C 1.39901 * 120.00299 * 180.02562 * 15 14 12 17 17 C 1.38843 * 120.05406 * 359.71812 * 16 15 14 18 18 C 1.38130 * 119.96585 * 179.72687 * 17 16 15 19 19 C 1.38480 * 120.06439 * 0.55250 * 18 17 16 20 20 F 1.35100 * 119.94465 * 179.74997 * 19 18 17 21 21 C 1.38443 * 120.10540 * 359.72253 * 19 18 17 22 22 C 1.38227 * 120.03848 * 0.02562 * 21 19 18 23 23 Cl 1.73603 * 120.03213 * 179.97438 * 22 21 19 24 24 H 1.08999 * 109.46699 * 175.07504 * 1 2 3 25 25 H 1.09001 * 109.46966 * 295.07408 * 1 2 3 26 26 H 1.08997 * 109.46986 * 55.08078 * 1 2 3 27 27 H 0.97001 * 119.99567 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00046 * 0.27624 * 14 12 2 29 29 H 0.96999 * 119.99690 * 359.97438 * 15 14 12 30 30 H 1.08009 * 120.01499 * 359.97438 * 17 16 15 31 31 H 1.08003 * 119.97105 * 180.25442 * 18 17 16 32 32 H 1.08004 * 119.97869 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1340 -1.7856 -1.2295 6 6 2.3624 0.0122 -2.3573 7 7 2.7082 -0.6130 -3.4615 8 14 2.3181 1.8792 -2.3157 9 1 3.6038 2.3930 -1.7788 10 1 2.1126 2.4002 -3.6911 11 1 1.2029 2.3287 -1.4444 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6963 1.1193 14 7 1.7114 -0.2466 2.4545 15 7 2.1832 -0.9035 3.5985 16 6 1.8495 -0.4224 4.8691 17 6 1.0557 0.7094 4.9977 18 6 0.7227 1.1795 6.2532 19 6 1.1893 0.5298 7.3836 20 9 0.8662 0.9947 8.6102 21 6 1.9857 -0.5957 7.2586 22 6 2.3173 -1.0729 6.0044 23 17 3.3166 -2.4838 5.8479 24 1 -0.3633 -1.0239 -0.0882 25 1 -0.3633 0.4355 0.9308 26 1 -0.3633 0.5882 -0.8426 27 1 2.9400 -0.1045 -4.2543 28 1 1.1537 0.5421 2.5435 29 1 2.7406 -1.6923 3.5095 30 1 0.6954 1.2196 4.1166 31 1 0.1017 2.0575 6.3533 32 1 2.3482 -1.1011 8.1416 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885138627.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:13 Heat of formation + Delta-G solvation = -49.179765 kcal Electronic energy + Delta-G solvation = -19570.071075 eV Core-core repulsion = 16085.397889 eV Total energy + Delta-G solvation = -3484.673185 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.76827 -41.19748 -40.09796 -37.55449 -36.87624 -35.71335 -33.75054 -32.42726 -31.98129 -28.84676 -27.23318 -25.04966 -24.03602 -23.08044 -21.51687 -19.56207 -19.15360 -18.54767 -18.47615 -17.12717 -16.90759 -16.57767 -16.28561 -16.15268 -15.75813 -15.26654 -14.82657 -14.77073 -14.49311 -14.35514 -14.08965 -13.96684 -13.24311 -13.05945 -12.92808 -12.58523 -12.28464 -12.23888 -12.13058 -12.11583 -11.74595 -11.28861 -10.79016 -10.69323 -10.34852 -10.04756 -8.32162 -8.27450 -6.35921 -0.01810 0.14744 0.81751 1.05939 1.39078 1.43109 1.52262 1.72738 2.36816 2.44086 3.00335 3.17782 3.34983 3.53051 3.94358 4.00760 4.15343 4.34968 4.37210 4.63366 4.69805 4.79002 4.87493 4.94356 5.08882 5.12102 5.42875 5.55297 5.58989 5.78938 6.18258 6.35129 6.59916 6.77754 7.25760 7.42655 8.90145 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.025438 B = 0.003962 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.465075 B = 7066.311346 C = 7838.711208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.008 3.992 3 H 0.083 0.917 4 C -0.511 4.511 5 H 0.023 0.977 6 C 0.008 3.992 7 N -0.950 5.950 8 Si 0.945 3.055 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.214 1.214 12 C 0.519 3.481 13 O -0.578 6.578 14 N -0.518 5.518 15 N -0.544 5.544 16 C 0.212 3.788 17 C -0.164 4.164 18 C -0.077 4.077 19 C 0.038 3.962 20 F -0.143 7.143 21 C -0.087 4.087 22 C -0.101 4.101 23 Cl -0.064 7.064 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.268 0.732 28 H 0.435 0.565 29 H 0.428 0.572 30 H 0.160 0.840 31 H 0.173 0.827 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 8.180 22.746 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.015 4.015 3 H 0.100 0.900 4 C -0.549 4.549 5 H 0.041 0.959 6 C -0.189 4.189 7 N -0.589 5.589 8 Si 0.767 3.233 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.136 1.136 12 C 0.307 3.693 13 O -0.454 6.454 14 N -0.268 5.268 15 N -0.268 5.268 16 C 0.106 3.894 17 C -0.187 4.187 18 C -0.096 4.096 19 C 0.016 3.984 20 F -0.122 7.122 21 C -0.107 4.107 22 C -0.133 4.133 23 Cl -0.036 7.036 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.280 0.720 29 H 0.271 0.729 30 H 0.178 0.822 31 H 0.190 0.810 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.698 7.460 22.309 24.203 hybrid contribution 0.616 -0.158 -0.423 0.764 sum -5.082 7.302 21.886 23.625 Atomic orbital electron populations 1.21924 0.93120 1.01571 1.02391 1.19297 0.96621 0.97133 0.88490 0.89968 1.20841 1.44099 0.93864 0.96139 0.95860 1.26105 0.93652 1.04870 0.94317 1.70072 1.47328 1.38623 1.02877 0.85786 0.80844 0.78077 0.78604 1.19518 1.21352 1.13559 1.22097 0.79205 0.84646 0.83307 1.90607 1.39591 1.28646 1.86556 1.45216 1.54006 1.30810 0.96813 1.43727 1.56413 1.31432 0.95258 1.17767 0.95346 0.94238 0.82090 1.20569 1.02385 0.96403 0.99357 1.21255 0.98441 1.00313 0.89589 1.17308 1.03479 0.97039 0.80585 1.91491 1.91557 1.88162 1.40947 1.20833 0.97616 0.95746 0.96529 1.19931 1.05402 0.95089 0.92917 1.98382 1.68172 1.39208 1.97816 0.94264 0.90126 0.91730 0.92317 0.71959 0.72899 0.82240 0.81001 0.82270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.12 71.99 0.66 -3.71 16 2 C 0.01 0.32 2.30 -12.28 -0.03 0.29 16 3 H 0.08 3.04 5.29 -2.39 -0.01 3.03 16 4 C -0.51 -28.86 8.36 25.60 0.21 -28.65 16 5 H 0.02 1.56 7.61 -2.91 -0.02 1.54 16 6 C 0.01 0.43 5.47 84.66 0.46 0.89 16 7 N -0.95 -59.01 13.96 21.45 0.30 -58.72 16 8 Si 0.95 39.63 26.99 68.60 1.85 41.48 16 9 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 10 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.21 -7.22 6.82 99.48 0.68 -6.54 16 12 C 0.52 21.15 7.26 87.66 0.64 21.78 16 13 O -0.58 -29.73 15.61 -3.00 -0.05 -29.77 16 14 N -0.52 -14.98 6.08 -173.54 -1.06 -16.03 16 15 N -0.54 -15.34 6.41 -51.24 -0.33 -15.67 16 16 C 0.21 4.70 6.72 38.17 0.26 4.95 16 17 C -0.16 -2.65 9.48 22.39 0.21 -2.44 16 18 C -0.08 -1.06 10.02 22.30 0.22 -0.84 16 19 C 0.04 0.64 7.30 22.38 0.16 0.80 16 20 F -0.14 -2.57 17.26 44.97 0.78 -1.79 16 21 C -0.09 -1.56 9.80 22.32 0.22 -1.34 16 22 C -0.10 -2.15 6.34 22.44 0.14 -2.00 16 23 Cl -0.06 -1.48 27.59 -2.72 -0.08 -1.56 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16 25 H 0.08 1.80 7.44 -2.39 -0.02 1.78 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.44 8.74 5.98 -213.32 -1.27 7.46 16 29 H 0.43 13.74 6.67 -213.32 -1.42 12.31 16 30 H 0.16 1.82 6.20 -2.91 -0.02 1.80 16 31 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 32 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -74.06 297.01 3.05 -71.01 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -1.53 Total: 21.30 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 3.16 Total: -10.26 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -1.09 Total: -90.42 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.05 Total: -29.77 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.85 Total: 41.48 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -74.06 3.05 -71.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885138627.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.834 kcal (2) G-P(sol) polarization free energy of solvation -74.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds