Wall clock time and date at job start Tue Mar 31 2020 06:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47471 * 2 1 4 4 H 1.08998 * 109.47242 * 306.14599 * 3 2 1 5 5 C 1.50699 * 109.47428 * 186.14513 * 3 2 1 6 6 C 1.38245 * 119.97098 * 299.72482 * 5 3 2 7 7 C 1.38204 * 120.02472 * 179.76373 * 6 5 3 8 8 C 1.38460 * 119.97160 * 0.51122 * 7 6 5 9 9 F 1.35103 * 120.02835 * 179.76429 * 8 7 6 10 10 C 1.38461 * 119.95140 * 359.74416 * 8 7 6 11 11 C 1.38206 * 119.97251 * 359.97438 * 10 8 7 12 12 S 1.81402 * 109.47145 * 66.14525 * 3 2 1 13 13 O 1.42098 * 108.57681 * 59.37535 * 12 3 2 14 14 O 1.42098 * 108.57638 * 288.35551 * 12 3 2 15 15 C 1.81399 * 101.92475 * 173.86851 * 12 3 2 16 16 C 1.50689 * 109.47411 * 175.03530 * 15 12 3 17 17 H 1.08002 * 120.00204 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00425 * 179.97438 * 16 15 12 19 19 N 1.31522 * 119.99697 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00520 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46881 * 60.00015 * 20 18 16 22 22 H 1.48496 * 109.47154 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46986 * 300.00617 * 20 18 16 24 24 H 1.09004 * 109.47039 * 51.87025 * 1 2 3 25 25 H 1.08997 * 109.47270 * 171.86998 * 1 2 3 26 26 H 1.09000 * 109.46807 * 291.87569 * 1 2 3 27 27 H 1.09000 * 109.46824 * 239.99563 * 2 1 3 28 28 H 1.09001 * 109.46710 * 120.00391 * 2 1 3 29 29 H 1.07992 * 119.99091 * 0.02562 * 6 5 3 30 30 H 1.07996 * 120.01313 * 180.25564 * 7 6 5 31 31 H 1.07999 * 120.01662 * 179.97438 * 10 8 7 32 32 H 1.07998 * 119.98685 * 180.02562 * 11 10 8 33 33 H 1.09008 * 109.46590 * 295.03498 * 15 12 3 34 34 H 1.08998 * 109.46816 * 55.02586 * 15 12 3 35 35 H 0.96993 * 119.99411 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5897 1.9870 -0.8298 5 6 3.5394 1.4451 -0.1521 6 6 4.3303 0.8158 0.7911 7 6 5.7052 0.8134 0.6501 8 6 6.2908 1.4507 -0.4307 9 9 7.6349 1.4532 -0.5670 10 6 5.4979 2.0852 -1.3718 11 6 4.1229 2.0813 -1.2319 12 16 1.5896 2.2431 1.5642 13 8 2.1737 1.5104 2.6325 14 8 0.1876 2.4747 1.5668 15 6 2.4389 3.8400 1.4260 16 6 2.0753 4.7059 2.6044 17 1 1.4004 4.3332 3.3607 18 6 2.6042 5.9742 2.7173 19 7 3.4257 6.4284 1.7961 20 14 2.1530 7.0480 4.1777 21 1 2.5667 6.3737 5.4344 22 1 2.8484 8.3552 4.0646 23 1 0.6845 7.2688 4.1947 24 1 -0.3633 0.6346 -0.8084 25 1 -0.3633 -1.0173 -0.1453 26 1 -0.3633 0.3829 0.9537 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8736 0.3222 1.6360 30 1 6.3227 0.3182 1.3848 31 1 5.9536 2.5830 -2.2150 32 1 3.5042 2.5757 -1.9660 33 1 3.5168 3.6782 1.4129 34 1 2.1345 4.3347 0.5038 35 1 3.7981 7.3205 1.8757 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:21 Heat of formation + Delta-G solvation = -107.456160 kcal Electronic energy + Delta-G solvation = -20944.237892 eV Core-core repulsion = 17562.621703 eV Total energy + Delta-G solvation = -3381.616190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.79324 -39.27401 -36.10200 -35.43227 -34.87150 -33.34872 -31.07562 -30.82485 -28.94696 -26.40325 -23.59416 -23.09619 -22.14701 -21.21896 -18.12561 -17.55701 -17.04359 -16.50868 -16.24312 -15.58857 -15.48857 -15.22726 -14.74762 -14.37837 -14.10369 -13.72634 -13.47611 -13.32511 -12.87618 -12.67244 -12.47402 -12.17604 -12.08623 -11.72492 -11.41409 -11.27608 -11.20967 -11.16387 -10.98121 -10.88146 -10.81544 -10.61039 -10.04709 -9.77992 -9.13036 -9.00467 -8.69503 -8.37487 -6.31653 -4.41534 0.76815 1.29210 1.33652 3.24593 3.26764 3.31696 3.58534 3.81026 4.20424 4.27589 4.36388 4.40810 4.74147 4.90509 4.98292 4.99163 5.07128 5.19098 5.32079 5.38702 5.47327 5.59432 5.74016 5.93345 6.00021 6.04439 6.11088 6.20725 6.32757 6.35245 6.53043 6.64586 6.74484 6.95803 7.47606 7.76065 8.59944 9.25292 10.79892 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.007338 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.757305 B = 3815.058033 C = 5330.004527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.100 4.100 3 C -0.547 4.547 4 H 0.139 0.861 5 C -0.080 4.080 6 C -0.086 4.086 7 C -0.147 4.147 8 C 0.097 3.903 9 F -0.143 7.143 10 C -0.151 4.151 11 C -0.071 4.071 12 S 2.390 3.610 13 O -0.952 6.952 14 O -0.951 6.951 15 C -0.395 4.395 16 C -0.531 4.531 17 H 0.070 0.930 18 C 0.077 3.923 19 N -0.879 5.879 20 Si 0.903 3.097 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.269 1.269 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.151 0.849 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 -10.617 -7.438 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.138 4.138 3 C -0.651 4.651 4 H 0.157 0.843 5 C -0.081 4.081 6 C -0.105 4.105 7 C -0.166 4.166 8 C 0.078 3.922 9 F -0.121 7.121 10 C -0.170 4.170 11 C -0.090 4.090 12 S 2.576 3.424 13 O -0.950 6.950 14 O -0.948 6.948 15 C -0.531 4.531 16 C -0.570 4.570 17 H 0.088 0.912 18 C -0.130 4.130 19 N -0.515 5.515 20 Si 0.729 3.271 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.194 1.194 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.169 0.831 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.448 -10.877 -6.860 12.941 hybrid contribution 0.622 0.988 -0.166 1.179 sum 2.070 -9.889 -7.026 12.306 Atomic orbital electron populations 1.22125 0.94599 1.02590 1.04149 1.21310 0.96355 0.91912 1.04184 1.29504 0.99548 1.09516 1.26549 0.84315 1.19047 0.92070 1.00315 0.96628 1.21297 0.92891 0.97634 0.98651 1.21096 0.95612 1.02020 0.97834 1.17763 0.76902 1.00623 0.96917 1.91482 1.29906 1.94944 1.95790 1.21078 0.93978 1.01840 1.00117 1.20913 0.93909 0.97138 0.97053 1.09226 0.76986 0.80046 0.76188 1.93441 1.79410 1.72602 1.49518 1.93471 1.29745 1.85729 1.85884 1.27421 1.08422 1.10891 1.06338 1.20308 1.30678 0.99781 1.06221 0.91159 1.24914 0.94017 0.97327 0.96708 1.69946 1.29632 1.18229 1.33685 0.86456 0.79254 0.79200 0.82218 1.19425 1.20709 1.19400 0.91632 0.91705 0.90957 0.90221 0.90382 0.83092 0.84423 0.84611 0.84674 0.89475 0.89942 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 9.33 37.16 0.35 -1.94 16 2 C -0.10 -1.29 5.10 -26.73 -0.14 -1.43 16 3 C -0.55 -8.20 2.44 -27.89 -0.07 -8.27 16 4 H 0.14 1.76 7.85 -51.93 -0.41 1.35 16 5 C -0.08 -1.19 3.78 -104.62 -0.40 -1.59 16 6 C -0.09 -1.32 8.53 -39.59 -0.34 -1.65 16 7 C -0.15 -2.10 10.03 -39.51 -0.40 -2.50 16 8 C 0.10 1.41 7.30 -39.42 -0.29 1.12 16 9 F -0.14 -2.07 17.27 2.25 0.04 -2.03 16 10 C -0.15 -2.05 10.03 -39.51 -0.40 -2.45 16 11 C -0.07 -0.98 9.67 -39.59 -0.38 -1.36 16 12 S 2.39 48.73 3.77 -107.50 -0.41 48.32 16 13 O -0.95 -21.00 15.96 -57.83 -0.92 -21.93 16 14 O -0.95 -21.47 16.11 -57.83 -0.93 -22.40 16 15 C -0.40 -9.42 5.05 36.00 0.18 -9.24 16 16 C -0.53 -14.68 9.11 -34.45 -0.31 -15.00 16 17 H 0.07 1.93 7.71 -52.49 -0.40 1.52 16 18 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 19 N -0.88 -24.71 13.29 55.43 0.74 -23.97 16 20 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H 0.06 0.79 8.11 -51.93 -0.42 0.36 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.09 6.29 -51.93 -0.33 0.77 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.00 7.50 -51.93 -0.39 0.61 16 29 H 0.15 2.29 6.25 -52.49 -0.33 1.96 16 30 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.14 1.53 8.06 -52.49 -0.42 1.10 16 32 H 0.14 1.52 7.94 -52.49 -0.42 1.11 16 33 H 0.09 2.10 7.72 -51.92 -0.40 1.70 16 34 H 0.08 1.91 8.14 -51.92 -0.42 1.48 16 35 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 311.30 15.07 4.69 4.69 Total: -1.00 -31.97 311.30 -8.44 -40.41 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.34 Total: 3.17 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: -2.28 Total: -42.27 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.74 Total: -23.97 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.85 Total: -44.33 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 48.73 SS G_CDS: -0.41 Total: 48.32 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.97 -8.44 -40.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.045 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds