Wall clock time and date at job start Tue Mar 31 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47229 * 2 1 4 4 C 1.46503 * 120.00043 * 274.97131 * 3 2 1 5 5 C 1.50700 * 109.47129 * 269.99694 * 4 3 2 6 6 H 1.07998 * 119.99839 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99638 * 180.02562 * 5 4 3 8 8 N 1.31507 * 120.00257 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99366 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47011 * 90.00126 * 9 7 5 11 11 H 1.48505 * 109.46942 * 209.99588 * 9 7 5 12 12 H 1.48496 * 109.47281 * 329.99815 * 9 7 5 13 13 C 1.34778 * 119.99779 * 94.97062 * 3 2 1 14 14 O 1.21587 * 119.99700 * 185.67607 * 13 3 2 15 15 C 1.47620 * 120.00197 * 5.39232 * 13 3 2 16 16 C 1.40075 * 120.55904 * 55.24970 * 15 13 3 17 17 C 1.38237 * 118.33222 * 179.75559 * 16 15 13 18 18 C 1.38550 * 119.37367 * 0.51417 * 17 16 15 19 19 Cl 1.73591 * 119.45466 * 179.72065 * 18 17 16 20 20 N 1.32032 * 121.09224 * 359.74640 * 18 17 16 21 21 C 1.31941 * 121.82677 * 359.97364 * 20 18 17 22 22 F 1.35096 * 119.75168 * 180.02562 * 21 20 18 23 23 H 1.08993 * 109.46755 * 299.99865 * 1 2 3 24 24 H 1.08995 * 109.46829 * 59.99848 * 1 2 3 25 25 H 1.09003 * 109.47108 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47189 * 240.00051 * 2 1 3 27 27 H 1.08998 * 109.47302 * 120.00308 * 2 1 3 28 28 H 1.08994 * 109.46894 * 30.00441 * 4 3 2 29 29 H 1.08998 * 109.46847 * 149.99869 * 4 3 2 30 30 H 0.97004 * 119.99648 * 180.02562 * 8 7 5 31 31 H 1.08001 * 120.83557 * 359.97438 * 16 15 13 32 32 H 1.08005 * 120.31506 * 180.23216 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1589 2.1085 -1.2640 5 6 3.5417 1.8861 -1.8205 6 1 4.2452 1.2648 -1.2863 7 6 3.9084 2.4758 -3.0115 8 7 3.0519 3.2327 -3.6617 9 14 5.6222 2.1995 -3.7016 10 1 5.6143 1.0039 -4.5825 11 1 6.0376 3.3898 -4.4865 12 1 6.5770 1.9851 -2.5847 13 6 2.3384 1.9828 1.1628 14 8 2.6446 3.1594 1.1744 15 6 2.3110 1.2148 2.4232 16 6 3.0518 0.0331 2.5534 17 6 2.9967 -0.6467 3.7558 18 6 2.2097 -0.1496 4.7821 19 17 2.1332 -1.0055 6.2904 20 7 1.5167 0.9641 4.6317 21 6 1.5405 1.6518 3.5059 22 9 0.8152 2.7864 3.3980 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.4179 1.7457 -1.9761 29 1 2.0044 3.1733 -1.0895 30 1 3.3099 3.6473 -4.4999 31 1 3.6538 -0.3358 1.7361 32 1 3.5581 -1.5592 3.8924 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906375118.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:48 Heat of formation + Delta-G solvation = -62.557361 kcal Electronic energy + Delta-G solvation = -20320.176653 eV Core-core repulsion = 16834.923372 eV Total energy + Delta-G solvation = -3485.253281 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.38050 -41.81818 -40.29825 -37.84712 -37.14728 -35.03431 -34.11025 -32.24945 -31.67340 -29.19182 -26.24683 -25.32363 -24.53881 -23.99526 -20.86213 -19.44459 -18.92043 -18.58766 -18.37750 -17.72046 -17.18946 -16.77636 -16.33980 -16.02088 -15.28856 -15.09977 -14.99027 -14.74578 -14.58656 -14.27288 -14.06742 -13.66988 -13.30633 -13.15556 -12.75950 -12.69040 -12.51166 -12.48314 -12.20048 -12.05677 -11.72920 -11.49012 -11.23875 -10.81198 -10.62815 -10.17741 -9.57385 -8.21664 -6.36750 -0.78555 -0.32361 0.38864 1.40004 1.43412 1.47870 1.53892 1.97749 2.16856 2.29930 2.42079 3.09079 3.15933 3.26859 3.59890 3.69677 4.04644 4.29401 4.33823 4.48147 4.54417 4.62445 4.83408 4.89564 4.99434 5.05537 5.19774 5.30703 5.52607 5.78094 5.99183 6.03249 6.53104 6.71979 7.11629 7.35400 8.86271 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.024974 B = 0.004405 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.884551 B = 6354.206144 C = 6593.202605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.091 3.909 3 N -0.585 5.585 4 C 0.260 3.740 5 C -0.543 4.543 6 H 0.064 0.936 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.549 3.451 14 O -0.580 6.580 15 C -0.193 4.193 16 C 0.003 3.997 17 C -0.134 4.134 18 C 0.212 3.788 19 Cl 0.006 6.994 20 N -0.527 5.527 21 C 0.347 3.653 22 F -0.112 7.112 23 H 0.041 0.959 24 H 0.043 0.957 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.029 0.971 29 H -0.003 1.003 30 H 0.267 0.733 31 H 0.190 0.810 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 -15.951 14.859 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.314 5.314 4 C 0.139 3.861 5 C -0.581 4.581 6 H 0.083 0.917 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.794 3.206 10 H -0.187 1.187 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.335 3.665 14 O -0.461 6.461 15 C -0.200 4.200 16 C -0.023 4.023 17 C -0.154 4.154 18 C 0.048 3.952 19 Cl 0.035 6.965 20 N -0.244 5.244 21 C 0.193 3.807 22 F -0.091 7.091 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.119 0.881 26 H 0.109 0.891 27 H 0.122 0.878 28 H 0.047 0.953 29 H 0.015 0.985 30 H 0.076 0.924 31 H 0.207 0.793 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.391 -14.970 15.473 21.574 hybrid contribution 0.634 0.792 -1.105 1.500 sum -0.756 -14.179 14.368 20.200 Atomic orbital electron populations 1.22143 0.95225 1.03647 1.01115 1.22018 0.95101 0.81135 1.04771 1.48196 1.61703 1.15443 1.06072 1.18844 0.96539 0.91118 0.79570 1.21699 0.99068 1.30963 1.06418 0.91734 1.25882 1.01791 0.94336 0.97120 1.70065 1.37279 1.32737 1.16841 0.85377 0.78851 0.77993 0.78362 1.18686 1.21257 1.19242 1.18246 0.77968 0.86274 0.84000 1.90784 1.50374 1.17856 1.87071 1.20798 1.04180 1.00337 0.94664 1.22049 0.92766 0.88467 0.98982 1.22272 0.99536 1.03633 0.89941 1.21872 0.93210 0.89524 0.90628 1.98446 1.96925 1.72137 1.29042 1.66173 1.24987 1.09298 1.23957 1.17707 0.90605 0.83466 0.88882 1.91655 1.75139 1.46727 1.95593 0.94012 0.93759 0.88092 0.89074 0.87843 0.95311 0.98475 0.92439 0.79260 0.77226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 10.24 71.98 0.74 -3.46 16 2 C 0.09 2.59 5.98 86.38 0.52 3.10 16 3 N -0.58 -24.01 2.46 -829.81 -2.04 -26.05 16 4 C 0.26 13.64 5.23 85.63 0.45 14.09 16 5 C -0.54 -29.70 9.39 25.60 0.24 -29.46 16 6 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -55.15 13.29 21.45 0.28 -54.87 16 9 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 C 0.55 23.33 6.87 86.72 0.60 23.92 16 14 O -0.58 -31.18 16.48 -3.99 -0.07 -31.24 16 15 C -0.19 -6.01 4.91 -19.96 -0.10 -6.11 16 16 C 0.00 0.06 7.63 22.72 0.17 0.23 16 17 C -0.13 -1.90 9.85 22.34 0.22 -1.68 16 18 C 0.21 4.25 7.27 84.74 0.62 4.87 16 19 Cl 0.01 0.09 29.10 -2.72 -0.08 0.01 16 20 N -0.53 -14.73 10.33 -186.54 -1.93 -16.66 16 21 C 0.35 11.29 8.40 85.08 0.72 12.01 16 22 F -0.11 -4.26 16.72 44.97 0.75 -3.51 16 23 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.09 2.54 8.11 -2.39 -0.02 2.52 16 27 H 0.10 2.15 4.44 -2.39 -0.01 2.14 16 28 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 29 H 0.00 -0.18 7.35 -2.39 -0.02 -0.20 16 30 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 31 H 0.19 2.91 7.62 -2.91 -0.02 2.89 16 32 H 0.21 0.97 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -75.12 304.65 4.73 -70.39 By element: Atomic # 1 Polarization: -2.61 SS G_CDS: 1.16 Total: -1.46 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 4.63 Total: 18.40 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -3.68 Total: -97.58 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.07 Total: -31.24 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.75 Total: -3.51 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -0.08 Total: 0.01 kcal Total: -75.12 4.73 -70.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906375118.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.833 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds