Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47139 * 2 1 4 4 H 1.08994 * 109.47406 * 54.99481 * 3 2 1 5 5 C 1.50700 * 109.46975 * 175.00351 * 3 2 1 6 6 H 1.07999 * 120.00484 * 120.00089 * 5 3 2 7 7 C 1.37879 * 119.99735 * 299.99095 * 5 3 2 8 8 N 1.31519 * 119.99854 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00103 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46925 * 90.00511 * 9 7 5 11 11 H 1.48493 * 109.47543 * 210.00595 * 9 7 5 12 12 H 1.48507 * 109.47090 * 330.01128 * 9 7 5 13 13 N 1.46500 * 109.47019 * 294.99752 * 3 2 1 14 14 C 1.34783 * 120.00042 * 84.99988 * 13 3 2 15 15 O 1.21581 * 119.99823 * 0.02562 * 14 13 3 16 16 C 1.47615 * 120.00037 * 180.02562 * 14 13 3 17 17 C 1.40075 * 120.56566 * 359.97438 * 16 14 13 18 18 C 1.38241 * 118.33713 * 179.97438 * 17 16 14 19 19 C 1.38548 * 119.36916 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.45151 * 180.02562 * 19 18 17 21 21 N 1.32034 * 121.09869 * 359.97438 * 19 18 17 22 22 C 1.31933 * 121.82502 * 0.02562 * 21 19 18 23 23 F 1.35099 * 119.75483 * 179.97438 * 22 21 19 24 24 H 1.08998 * 109.47487 * 300.00345 * 1 2 3 25 25 H 1.09000 * 109.47256 * 60.00246 * 1 2 3 26 26 H 1.09005 * 109.47355 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46793 * 239.99720 * 2 1 3 28 28 H 1.09000 * 109.47044 * 120.00264 * 2 1 3 29 29 H 0.97002 * 119.99758 * 179.97438 * 8 7 5 30 30 H 0.96996 * 120.00258 * 265.00001 * 13 3 2 31 31 H 1.07997 * 120.83109 * 359.95360 * 17 16 14 32 32 H 1.08001 * 120.31994 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4442 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3368 2.1729 9 14 6.0049 0.8812 1.3818 10 1 6.4416 2.1142 2.0849 11 1 6.4395 -0.3098 2.1549 12 1 6.6135 0.8416 0.0278 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3671 15 8 -0.3412 2.6326 -0.4319 16 6 0.0444 3.3238 -2.6286 17 6 0.9297 3.3677 -3.7133 18 6 0.5160 3.9966 -4.8728 19 6 -0.7493 4.5583 -4.9268 20 17 -1.2712 5.3480 -6.3821 21 7 -1.5652 4.5023 -3.8903 22 6 -1.2172 3.9136 -2.7620 23 9 -2.0851 3.8811 -1.7272 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8292 -0.0616 2.9496 30 1 2.2719 2.1231 -1.9978 31 1 1.9109 2.9218 -3.6453 32 1 1.1726 4.0488 -5.7287 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907389260.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = -70.342257 kcal Electronic energy + Delta-G solvation = -20147.809133 eV Core-core repulsion = 16662.218273 eV Total energy + Delta-G solvation = -3485.590860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.24336 -41.68029 -40.31470 -37.86087 -36.97578 -34.79053 -33.95043 -32.78013 -31.88017 -28.98023 -26.09151 -25.13933 -24.59482 -22.45610 -21.31158 -19.75143 -19.17344 -18.79102 -17.76326 -17.52960 -17.12781 -16.58496 -16.28724 -16.18039 -15.42020 -15.06423 -15.01713 -14.59691 -14.39833 -14.09597 -13.89736 -13.49740 -13.16386 -12.87494 -12.69900 -12.65811 -12.49114 -12.16714 -12.05978 -11.59069 -11.41993 -11.32710 -11.04528 -10.82074 -10.51424 -10.18216 -9.69417 -8.13740 -6.31273 -0.86287 -0.27114 0.39298 1.48906 1.49537 1.59536 1.65052 2.16130 2.36172 2.41603 2.50886 3.16798 3.18758 3.50985 3.59307 3.79939 4.37118 4.49859 4.56817 4.59276 4.60989 4.76256 5.04431 5.10316 5.26732 5.42886 5.50893 5.61072 5.78936 5.89669 6.02168 6.16919 6.75096 6.84397 7.31305 7.46820 8.91702 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.026039 B = 0.004125 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.047576 B = 6786.319697 C = 7521.431832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.546 4.546 6 H 0.079 0.921 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.255 1.255 13 N -0.687 5.687 14 C 0.544 3.456 15 O -0.570 6.570 16 C -0.207 4.207 17 C 0.011 3.989 18 C -0.143 4.143 19 C 0.215 3.785 20 Cl 0.003 6.997 21 N -0.537 5.537 22 C 0.357 3.643 23 F -0.103 7.103 24 H 0.024 0.976 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.264 0.736 30 H 0.407 0.593 31 H 0.197 0.803 32 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.622 6.072 -18.592 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.097 0.903 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.179 1.179 13 N -0.337 5.337 14 C 0.330 3.670 15 O -0.451 6.451 16 C -0.215 4.215 17 C -0.014 4.014 18 C -0.163 4.163 19 C 0.050 3.950 20 Cl 0.032 6.968 21 N -0.255 5.255 22 C 0.203 3.797 23 F -0.082 7.082 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.244 0.756 31 H 0.214 0.786 32 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.030 6.374 -17.882 19.225 hybrid contribution 1.035 -0.259 0.699 1.276 sum -1.995 6.115 -17.183 18.348 Atomic orbital electron populations 1.21699 0.97343 0.99165 1.00098 1.21799 0.93359 0.99089 1.01725 1.18462 0.93993 0.89175 0.80871 0.98168 1.21566 0.91010 1.38966 1.06889 0.90261 1.25761 1.03200 0.94388 0.95071 1.70055 1.37115 1.38320 1.09897 0.85378 0.79201 0.77162 0.78785 1.20733 1.21406 1.17920 1.46083 1.14437 1.55084 1.18076 1.18099 0.82909 0.79250 0.86789 1.90828 1.52334 1.60718 1.41173 1.20977 0.95678 1.06553 0.98245 1.22203 0.99498 0.91164 0.88562 1.22296 0.94801 0.98070 1.01177 1.21935 0.90633 0.94195 0.88194 1.98445 1.91522 1.77728 1.29138 1.66196 1.38737 1.20660 0.99875 1.17905 0.85426 0.93287 0.83060 1.91696 1.69012 1.93377 1.54079 0.95651 0.94087 0.93561 0.93414 0.90846 0.92668 0.75596 0.78601 0.77439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 8.51 71.98 0.61 -4.96 16 2 C -0.12 -5.68 5.45 30.59 0.17 -5.51 16 3 C 0.28 13.44 2.24 44.24 0.10 13.54 16 4 H 0.00 0.02 7.58 -2.39 -0.02 0.01 16 5 C -0.55 -26.89 8.73 25.60 0.22 -26.66 16 6 H 0.08 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -50.71 11.29 21.45 0.24 -50.47 16 9 Si 0.97 39.92 29.54 68.60 2.03 41.95 16 10 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 13 N -0.69 -25.70 4.98 -449.20 -2.24 -27.94 16 14 C 0.54 20.86 6.34 86.72 0.55 21.41 16 15 O -0.57 -27.23 12.50 -3.97 -0.05 -27.28 16 16 C -0.21 -6.01 5.90 -19.95 -0.12 -6.13 16 17 C 0.01 0.20 9.64 22.72 0.22 0.42 16 18 C -0.14 -1.94 9.85 22.34 0.22 -1.72 16 19 C 0.21 4.30 7.27 84.74 0.62 4.92 16 20 Cl 0.00 0.05 29.10 -2.72 -0.08 -0.03 16 21 N -0.54 -15.05 10.33 -186.53 -1.93 -16.98 16 22 C 0.36 11.45 8.41 85.08 0.72 12.17 16 23 F -0.10 -3.93 15.59 44.97 0.70 -3.23 16 24 H 0.02 1.22 7.84 -2.39 -0.02 1.20 16 25 H 0.04 1.75 5.65 -2.39 -0.01 1.74 16 26 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 3.90 5.95 -2.39 -0.01 3.89 16 29 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 30 H 0.41 11.62 6.64 -92.71 -0.62 11.00 16 31 H 0.20 2.06 6.52 -2.91 -0.02 2.04 16 32 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -68.11 292.85 3.00 -65.11 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.57 Total: 10.14 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 3.75 Total: 8.74 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -3.92 Total: -95.38 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.70 Total: -3.23 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.08 Total: -0.03 kcal Total: -68.11 3.00 -65.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907389260.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.232 kcal (2) G-P(sol) polarization free energy of solvation -68.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds