Wall clock time and date at job start Tue Mar 31 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99496 * 2 1 4 4 H 1.48506 * 109.46584 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47333 * 299.99949 * 3 2 1 6 6 H 1.48503 * 109.47029 * 60.00666 * 3 2 1 7 7 C 1.37868 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00015 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00458 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47558 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.47293 * 179.97438 * 10 9 7 12 12 C 1.34227 * 117.00075 * 179.97438 * 11 10 9 13 13 O 1.20831 * 119.99915 * 359.97438 * 12 11 10 14 14 C 1.50701 * 120.00054 * 179.97438 * 12 11 10 15 15 O 1.42893 * 109.47247 * 179.97438 * 14 12 11 16 16 C 1.36000 * 117.00366 * 179.97438 * 15 14 12 17 17 C 1.38641 * 120.03190 * 0.30029 * 16 15 14 18 18 C 1.38189 * 119.99176 * 180.27934 * 17 16 15 19 19 C 1.38461 * 120.06953 * 359.41912 * 18 17 16 20 20 F 1.35095 * 119.96214 * 180.30423 * 19 18 17 21 21 C 1.38442 * 120.07028 * 0.28207 * 19 18 17 22 22 C 1.38328 * 120.00942 * 0.02562 * 21 19 18 23 23 F 1.35102 * 120.03447 * 180.02562 * 22 21 19 24 24 H 0.97003 * 120.00109 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46866 * 59.99409 * 9 7 2 26 26 H 1.09001 * 109.46589 * 300.00485 * 9 7 2 27 27 H 1.08999 * 109.47669 * 59.99712 * 10 9 7 28 28 H 1.09009 * 109.47264 * 299.99508 * 10 9 7 29 29 H 1.09004 * 109.46727 * 59.99692 * 14 12 11 30 30 H 1.09001 * 109.46738 * 300.00140 * 14 12 11 31 31 H 1.07995 * 120.00927 * 359.97438 * 17 16 15 32 32 H 1.08002 * 119.96900 * 179.70437 * 18 17 16 33 33 H 1.08008 * 119.99462 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5195 -4.9195 0.0001 12 6 2.2506 -6.0452 -0.0004 13 8 3.4572 -5.9819 -0.0017 14 6 1.5665 -7.3880 0.0008 15 8 2.5507 -8.4240 -0.0006 16 6 2.0975 -9.7063 0.0008 17 6 0.7346 -9.9605 -0.0029 18 6 0.2750 -11.2637 0.0043 19 6 1.1743 -12.3165 0.0031 20 9 0.7225 -13.5897 0.0039 21 6 2.5358 -12.0658 0.0005 22 6 2.9993 -10.7625 -0.0003 23 9 4.3278 -10.5172 -0.0033 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8897 27 1 2.8721 -3.6043 0.8894 28 1 2.8721 -3.6043 -0.8906 29 1 0.9427 -7.4787 -0.8885 30 1 0.9447 -7.4782 0.8915 31 1 0.0321 -9.1402 -0.0065 32 1 -0.7868 -11.4613 0.0063 33 1 3.2362 -12.8880 0.0000 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914661490.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:32 Heat of formation + Delta-G solvation = -209.184712 kcal Electronic energy + Delta-G solvation = -20965.735822 eV Core-core repulsion = 17013.495175 eV Total energy + Delta-G solvation = -3952.240647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.00956 -49.95176 -41.80833 -40.87821 -38.51265 -37.61727 -35.47093 -32.55704 -32.03371 -31.23721 -29.49374 -26.97825 -24.56712 -23.74060 -23.06491 -22.09975 -19.91540 -19.02881 -18.87931 -18.53516 -18.14795 -17.94434 -17.36471 -17.25680 -16.73754 -16.51762 -16.47339 -16.20607 -15.85782 -15.47170 -15.00797 -14.94695 -14.39429 -14.21159 -13.62040 -13.37992 -13.36283 -13.08967 -13.03542 -12.63775 -12.61453 -12.39087 -12.10263 -11.88195 -11.54769 -11.53074 -11.35127 -10.62020 -10.20302 -9.29602 -8.28092 -6.40621 -0.14471 -0.09385 0.97488 1.01734 1.41370 1.42252 1.55480 2.25616 2.27453 2.42445 2.84384 3.06839 3.24760 3.41746 3.58980 3.78538 3.90595 3.98287 4.04342 4.20507 4.22622 4.30055 4.67236 4.70437 4.78131 4.91915 4.96191 5.20198 5.44902 5.46684 5.47839 5.72988 5.98956 6.06206 6.60466 6.73213 7.29257 8.84503 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.046282 B = 0.002439 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.846976 B =11477.463904 C =12056.560303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.063 0.937 9 C 0.031 3.969 10 C 0.091 3.909 11 O -0.353 6.353 12 C 0.455 3.545 13 O -0.534 6.534 14 C 0.071 3.929 15 O -0.316 6.316 16 C 0.077 3.923 17 C -0.143 4.143 18 C -0.106 4.106 19 C 0.085 3.915 20 F -0.135 7.135 21 C -0.150 4.150 22 C 0.075 3.925 23 F -0.141 7.141 24 H 0.268 0.732 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.185 0.815 32 H 0.179 0.821 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.179 -25.146 0.009 25.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.081 0.919 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.269 6.269 12 C 0.298 3.702 13 O -0.424 6.424 14 C -0.003 4.003 15 O -0.230 6.230 16 C 0.031 3.969 17 C -0.161 4.161 18 C -0.124 4.124 19 C 0.066 3.934 20 F -0.114 7.114 21 C -0.169 4.169 22 C 0.055 3.945 23 F -0.120 7.120 24 H 0.077 0.923 25 H 0.030 0.970 26 H 0.029 0.971 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.203 0.797 32 H 0.197 0.803 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.731 -24.933 0.007 24.993 hybrid contribution 0.774 0.876 0.001 1.169 sum -0.957 -24.057 0.008 24.076 Atomic orbital electron populations 1.70081 1.07669 1.28233 1.50421 1.25908 0.95838 1.03247 0.94120 0.85311 0.78860 0.78302 0.78045 1.18852 1.20051 1.20039 1.21398 0.93675 0.91325 1.52423 0.91895 1.18993 0.94305 0.90206 0.97115 1.23245 0.95194 0.78564 1.01198 1.86455 1.42025 1.15293 1.83170 1.23743 0.86300 0.87702 0.72427 1.90692 1.17418 1.88387 1.45864 1.22285 0.89246 0.79587 1.09231 1.86122 1.35478 1.12277 1.89158 1.19234 0.93664 0.82731 1.01250 1.21425 0.92204 0.99468 1.03021 1.21391 1.02051 0.90124 0.98871 1.17325 0.91427 0.79666 1.05019 1.91531 1.89386 1.36397 1.94072 1.21006 0.96260 0.95447 1.04184 1.16884 0.76976 0.91937 1.08700 1.91514 1.31177 1.95052 1.94246 0.92288 0.97043 0.97051 0.92119 0.92113 0.83415 0.83409 0.79743 0.80347 0.81458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.03 13.29 21.44 0.28 -53.75 16 2 C 0.01 0.45 5.46 84.65 0.46 0.91 16 3 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -30.57 9.11 25.60 0.23 -30.33 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.60 5.35 29.85 0.16 1.76 16 10 C 0.09 3.93 5.40 71.98 0.39 4.32 16 11 O -0.35 -12.81 10.22 -51.39 -0.53 -13.34 16 12 C 0.45 14.55 8.03 71.24 0.57 15.12 16 13 O -0.53 -21.65 16.25 28.38 0.46 -21.19 16 14 C 0.07 1.36 5.33 71.24 0.38 1.74 16 15 O -0.32 -7.79 9.53 -74.48 -0.71 -8.50 16 16 C 0.08 1.47 6.69 22.52 0.15 1.62 16 17 C -0.14 -1.55 9.04 22.35 0.20 -1.35 16 18 C -0.11 -1.00 10.02 22.31 0.22 -0.78 16 19 C 0.09 1.14 7.30 22.37 0.16 1.30 16 20 F -0.14 -1.96 17.26 44.97 0.78 -1.19 16 21 C -0.15 -2.30 10.00 22.34 0.22 -2.08 16 22 C 0.07 1.55 7.31 22.45 0.16 1.71 16 23 F -0.14 -3.70 17.11 44.97 0.77 -2.93 16 24 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 25 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.01 0.60 8.14 -2.39 -0.02 0.59 16 27 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 28 H 0.06 2.62 8.13 -2.38 -0.02 2.60 16 29 H 0.15 1.70 7.65 -2.39 -0.02 1.68 16 30 H 0.15 1.70 7.67 -2.39 -0.02 1.68 16 31 H 0.19 0.77 6.30 -2.91 -0.02 0.75 16 32 H 0.18 0.63 8.06 -2.91 -0.02 0.60 16 33 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -72.08 309.91 7.55 -64.52 By element: Atomic # 1 Polarization: -3.72 SS G_CDS: 1.15 Total: -2.57 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 3.32 Total: -6.06 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.28 Total: -53.75 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.77 Total: -43.03 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 1.55 Total: -4.12 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -72.08 7.55 -64.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914661490.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.662 kcal (2) G-P(sol) polarization free energy of solvation -72.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds