Wall clock time and date at job start Tue Mar 31 2020 05:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48508 * 109.47012 * 270.00139 * 3 2 1 5 5 H 1.48496 * 109.47428 * 29.99985 * 3 2 1 6 6 H 1.48503 * 109.47230 * 150.00520 * 3 2 1 7 7 C 1.37884 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99838 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00200 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99515 * 180.02562 * 10 9 7 12 12 O 1.21583 * 120.00543 * 0.26795 * 11 10 9 13 13 N 1.34784 * 119.99547 * 179.97438 * 11 10 9 14 14 N 1.40097 * 120.00130 * 359.97438 * 13 11 10 15 15 C 1.39155 * 120.00159 * 180.02562 * 14 13 11 16 16 N 1.32600 * 120.11991 * 359.71612 * 15 14 13 17 17 N 1.28303 * 122.28843 * 179.74623 * 16 15 14 18 18 C 1.31680 * 122.38399 * 0.54561 * 17 16 15 19 19 C 1.39548 * 119.89013 * 359.73430 * 18 17 16 20 20 N 1.39340 * 121.06377 * 179.97438 * 19 18 17 21 21 C 1.39228 * 120.12135 * 180.02562 * 15 14 13 22 22 Cl 1.73603 * 121.09755 * 359.94970 * 21 15 14 23 23 H 0.96992 * 120.00108 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47258 * 59.99888 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00048 * 9 7 2 26 26 H 0.96999 * 120.00076 * 359.97438 * 10 9 7 27 27 H 0.97005 * 119.99846 * 179.97438 * 13 11 10 28 28 H 0.97005 * 120.00024 * 359.97438 * 14 13 11 29 29 H 1.07999 * 120.05400 * 179.75516 * 18 17 16 30 30 H 0.96995 * 119.99845 * 180.02562 * 20 19 18 31 31 H 0.97001 * 119.99608 * 0.03005 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5754 0.0001 11 6 5.3249 -2.8215 0.0001 12 8 6.1151 -1.8975 0.0050 13 7 5.7742 -4.0923 0.0008 14 7 4.8638 -5.1572 0.0019 15 6 5.3276 -6.4691 0.0031 16 7 6.6308 -6.7142 -0.0025 17 7 7.1039 -7.9068 0.0031 18 6 6.3303 -8.9724 0.0043 19 6 4.9427 -8.8245 0.0049 20 7 4.1012 -9.9351 0.0056 21 6 4.4251 -7.5293 0.0037 22 17 2.7119 -7.2484 0.0043 23 1 -0.4850 0.8400 0.0004 24 1 3.8753 -0.6796 0.8894 25 1 3.8746 -0.6808 -0.8905 26 1 3.3696 -3.3126 0.0009 27 1 6.7279 -4.2696 0.0004 28 1 3.9101 -4.9799 0.0026 29 1 6.7691 -9.9593 0.0051 30 1 3.1388 -9.8144 0.0057 31 1 4.4780 -10.8290 0.0061 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116842715.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:28 Heat of formation + Delta-G solvation = 39.958474 kcal Electronic energy + Delta-G solvation = -19544.626620 eV Core-core repulsion = 16116.031471 eV Total energy + Delta-G solvation = -3428.595148 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.069 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.10971 -41.13820 -38.09403 -37.93889 -36.54761 -36.29553 -34.47288 -33.74251 -31.27623 -30.32016 -29.59352 -25.66260 -24.48353 -24.28014 -22.11105 -20.79224 -19.97342 -19.26297 -18.48143 -17.97602 -17.53831 -16.93036 -16.76291 -16.45543 -16.34781 -16.33648 -15.90989 -15.07063 -14.81327 -14.55103 -14.40324 -13.68658 -13.59415 -13.07749 -12.80121 -12.71674 -12.48564 -11.97214 -11.92077 -11.69120 -11.61391 -11.01860 -10.91624 -10.85094 -10.12393 -9.25895 -8.88205 -8.39312 -6.46773 -0.20525 0.14257 0.63913 0.89123 1.35719 1.38077 1.50805 1.93297 1.94919 2.29977 2.44076 2.54520 2.96582 3.05132 3.31726 3.59864 4.00918 4.17474 4.45785 4.72510 4.92415 5.02814 5.18948 5.19500 5.34989 5.80983 5.97338 6.11878 6.19974 6.54341 6.61627 6.99773 7.18157 7.36723 7.81996 8.75103 Molecular weight = 286.07amu Principal moments of inertia in cm(-1) A = 0.025266 B = 0.003986 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.955949 B = 7023.644324 C = 8116.454148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.030 3.970 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.247 3.753 10 N -0.717 5.717 11 C 0.707 3.293 12 O -0.616 6.616 13 N -0.517 5.517 14 N -0.506 5.506 15 C 0.388 3.612 16 N -0.370 5.370 17 N -0.189 5.189 18 C -0.042 4.042 19 C 0.282 3.718 20 N -0.814 5.814 21 C -0.218 4.218 22 Cl -0.035 7.035 23 H 0.273 0.727 24 H 0.019 0.981 25 H 0.018 0.982 26 H 0.398 0.602 27 H 0.444 0.556 28 H 0.436 0.564 29 H 0.217 0.783 30 H 0.414 0.586 31 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.122 -24.842 0.009 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.123 3.877 10 N -0.372 5.372 11 C 0.406 3.594 12 O -0.494 6.494 13 N -0.273 5.273 14 N -0.241 5.241 15 C 0.146 3.854 16 N -0.225 5.225 17 N -0.026 5.026 18 C -0.221 4.221 19 C 0.157 3.843 20 N -0.354 5.354 21 C -0.267 4.267 22 Cl -0.007 7.007 23 H 0.082 0.918 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.233 0.767 27 H 0.291 0.709 28 H 0.282 0.718 29 H 0.233 0.767 30 H 0.246 0.754 31 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 8.832 -23.109 0.008 24.739 hybrid contribution -2.220 -0.222 -0.011 2.231 sum 6.612 -23.331 -0.003 24.250 Atomic orbital electron populations 1.69967 1.07670 1.28666 1.50473 1.25540 0.95511 1.02563 0.93443 0.85875 0.79384 0.79259 0.79512 1.18968 1.19921 1.18186 1.21225 0.89653 0.94690 1.53033 0.92179 1.19114 0.93367 0.78854 0.96318 1.45161 1.04040 1.10462 1.77538 1.15826 0.83487 0.81544 0.78521 1.90947 1.56017 1.41262 1.61132 1.44270 1.06089 0.95996 1.80903 1.43137 1.04536 0.95682 1.80709 1.19390 0.91619 0.83458 0.90976 1.72920 1.08133 1.15021 1.26445 1.72379 1.31972 0.93952 1.04337 1.24362 0.87949 1.01741 1.08024 1.18342 0.91884 0.86546 0.87483 1.42511 1.09034 1.05727 1.78095 1.20559 0.86634 0.92802 1.26699 1.98386 1.08879 1.95845 1.97608 0.91800 0.96328 0.96454 0.76698 0.70898 0.71751 0.76656 0.75399 0.73674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.76 13.96 21.45 0.30 -54.47 16 2 C 0.03 1.68 5.47 84.66 0.46 2.14 16 3 Si 0.94 43.55 27.47 68.60 1.88 45.43 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.26 -11.86 6.54 99.48 0.65 -11.21 16 7 C -0.55 -29.89 9.83 25.60 0.25 -29.63 16 8 H 0.06 3.42 7.84 -2.91 -0.02 3.40 16 9 C 0.25 12.11 4.50 85.63 0.38 12.49 16 10 N -0.72 -29.59 5.51 -482.29 -2.66 -32.24 16 11 C 0.71 28.45 8.68 179.05 1.55 30.01 16 12 O -0.62 -29.15 17.18 -3.98 -0.07 -29.22 16 13 N -0.52 -16.77 6.30 -184.74 -1.16 -17.94 16 14 N -0.51 -14.08 6.39 -55.17 -0.35 -14.43 16 15 C 0.39 9.86 7.68 132.97 1.02 10.88 16 16 N -0.37 -10.05 10.55 -55.13 -0.58 -10.63 16 17 N -0.19 -4.32 11.48 -56.78 -0.65 -4.97 16 18 C -0.04 -0.58 11.21 85.03 0.95 0.38 16 19 C 0.28 3.77 6.83 38.56 0.26 4.03 16 20 N -0.81 -4.01 9.06 -50.83 -0.46 -4.47 16 21 C -0.22 -4.29 6.42 22.81 0.15 -4.15 16 22 Cl -0.04 -0.65 26.61 -2.72 -0.07 -0.73 16 23 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 24 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 25 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 26 H 0.40 14.54 6.24 -92.71 -0.58 13.96 16 27 H 0.44 13.86 8.08 -213.32 -1.72 12.14 16 28 H 0.44 11.65 5.47 -213.32 -1.17 10.48 16 29 H 0.22 0.96 8.06 -2.91 -0.02 0.93 16 30 H 0.41 1.97 7.72 -92.71 -0.72 1.25 16 31 H 0.43 -0.76 8.87 -92.71 -0.82 -1.58 16 Total: -1.00 -72.33 291.22 -2.58 -74.91 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: -3.79 Total: 22.59 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 5.04 Total: 26.15 kcal Atomic # 7 Polarization: -133.57 SS G_CDS: -5.57 Total: -139.14 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.07 Total: -29.22 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.07 Total: -0.73 kcal Total: -72.33 -2.58 -74.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116842715.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.873 kcal (2) G-P(sol) polarization free energy of solvation -72.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds