Wall clock time and date at job start Tue Mar 31 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36886 * 126.39850 * 2 1 4 4 Cl 1.73595 * 126.59815 * 359.97438 * 3 2 1 5 5 C 1.34796 * 106.80023 * 180.02562 * 3 2 1 6 6 N 1.34169 * 108.01722 * 359.74744 * 5 3 2 7 7 C 1.30472 * 109.26540 * 0.42343 * 6 5 3 8 8 C 1.50700 * 125.64030 * 179.83784 * 7 6 5 9 9 S 1.81406 * 109.47001 * 269.69630 * 8 7 6 10 10 C 1.81402 * 102.99893 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.46788 * 179.97438 * 10 9 8 12 12 C 1.50699 * 115.55333 * 304.61780 * 11 10 9 13 13 H 1.08003 * 120.00007 * 95.17466 * 12 11 10 14 14 C 1.37880 * 120.00295 * 275.17822 * 12 11 10 15 15 N 1.31511 * 119.99659 * 7.11014 * 14 12 11 16 16 Si 1.86792 * 120.00204 * 187.11056 * 14 12 11 17 17 H 1.48505 * 109.47293 * 269.99926 * 16 14 12 18 18 H 1.48499 * 109.47270 * 29.99801 * 16 14 12 19 19 H 1.48501 * 109.47395 * 150.00030 * 16 14 12 20 20 C 1.53002 * 117.50115 * 90.29300 * 11 10 9 21 21 C 1.53007 * 117.49541 * 158.95199 * 11 10 9 22 22 H 1.08994 * 109.47072 * 269.97726 * 1 2 3 23 23 H 1.09006 * 109.47162 * 29.97870 * 1 2 3 24 24 H 1.09002 * 109.46723 * 149.97339 * 1 2 3 25 25 H 1.08003 * 125.99153 * 179.97438 * 5 3 2 26 26 H 1.09000 * 109.47139 * 149.69938 * 8 7 6 27 27 H 1.09000 * 109.47440 * 29.69207 * 8 7 6 28 28 H 1.08999 * 109.47301 * 60.00173 * 10 9 8 29 29 H 1.09003 * 109.46767 * 299.99561 * 10 9 8 30 30 H 0.97008 * 120.00210 * 355.40039 * 15 14 12 31 31 H 1.08995 * 117.49846 * 215.00328 * 20 11 10 32 32 H 1.09001 * 117.49465 * 0.02562 * 20 11 10 33 33 H 1.08996 * 117.49808 * 359.97183 * 21 11 10 34 34 H 1.09005 * 117.49655 * 144.97821 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 17 1.7696 2.7619 -0.0006 5 6 3.5471 0.6497 -0.0006 6 7 3.5101 -0.6915 0.0047 7 6 2.2671 -1.0879 -0.0006 8 6 1.8025 -2.5215 -0.0008 9 16 1.6155 -3.0963 -1.7111 10 6 1.0592 -4.8107 -1.5069 11 6 0.8517 -5.4468 -2.8828 12 6 -0.0864 -4.7109 -3.8044 13 1 0.3058 -4.0133 -4.5297 14 6 -1.4455 -4.9281 -3.7217 15 7 -1.9353 -5.6675 -2.7507 16 14 -2.5910 -4.1720 -4.9887 17 1 -3.0280 -2.8312 -4.5234 18 1 -1.8771 -4.0380 -6.2839 19 1 -3.7786 -5.0457 -5.1662 20 6 2.0448 -6.1655 -3.5161 21 6 0.8683 -6.9746 -2.9645 22 1 -0.3633 -0.0004 1.0276 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5143 25 1 4.4382 1.2600 -0.0011 26 1 0.8441 -2.5929 0.5134 27 1 2.5374 -3.1416 0.5126 28 1 0.1193 -4.8245 -0.9552 29 1 1.8124 -5.3738 -0.9557 30 1 -1.3365 -6.1146 -2.1321 31 1 2.1512 -6.1058 -4.5992 32 1 2.9775 -6.1854 -2.9523 33 1 1.0275 -7.5264 -2.0381 34 1 0.2004 -7.4474 -3.6847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118537581.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:12 Heat of formation + Delta-G solvation = 57.885933 kcal Electronic energy + Delta-G solvation = -17759.953342 eV Core-core repulsion = 14846.136050 eV Total energy + Delta-G solvation = -2913.817292 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.060 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.31080 -38.73613 -37.86700 -35.23843 -33.93312 -32.87829 -29.60393 -28.48415 -27.65568 -26.85570 -23.08512 -22.68533 -21.70355 -21.08729 -18.75096 -18.32144 -17.49993 -16.78745 -16.32525 -15.85221 -15.61928 -15.41315 -15.26243 -14.96457 -14.48142 -14.24635 -14.07724 -13.78631 -13.66874 -13.40379 -12.98796 -12.77996 -12.64130 -12.57156 -12.20214 -11.96109 -11.46342 -11.22161 -11.07988 -10.80916 -10.48964 -10.39096 -10.10354 -9.39023 -8.52260 -8.47613 -6.21114 0.18068 0.49434 1.03002 1.54869 1.61710 1.73861 1.79601 1.82035 2.03424 2.58776 3.11642 3.26463 3.31777 3.62250 3.74579 4.03938 4.19471 4.22003 4.25116 4.26468 4.42359 4.44890 4.51780 4.55495 4.73895 4.85132 4.94319 5.05257 5.37593 5.37678 5.45652 5.78260 6.19285 6.29123 6.76348 6.76603 7.56450 8.91461 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.004555 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.779458 B = 6145.317287 C = 7083.481825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.443 5.443 3 C 0.012 3.988 4 Cl 0.013 6.987 5 C -0.005 4.005 6 N -0.495 5.495 7 C 0.235 3.765 8 C -0.013 4.013 9 S -0.236 6.236 10 C -0.028 4.028 11 C 0.005 3.995 12 C -0.564 4.564 13 H 0.033 0.967 14 C -0.009 4.009 15 N -0.929 5.929 16 Si 1.102 2.898 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.284 1.284 20 C -0.175 4.175 21 C -0.168 4.168 22 H 0.106 0.894 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.204 0.796 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.267 0.733 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.160 12.212 8.600 15.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.128 5.128 3 C -0.130 4.130 4 Cl 0.041 6.959 5 C -0.156 4.156 6 N -0.216 5.216 7 C -0.028 4.028 8 C -0.162 4.162 9 S -0.008 6.008 10 C -0.177 4.177 11 C 0.003 3.997 12 C -0.602 4.602 13 H 0.052 0.948 14 C -0.210 4.210 15 N -0.566 5.566 16 Si 0.926 3.074 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.210 1.210 20 C -0.212 4.212 21 C -0.208 4.208 22 H 0.124 0.876 23 H 0.121 0.879 24 H 0.111 0.889 25 H 0.220 0.780 26 H 0.127 0.873 27 H 0.135 0.865 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.192 12.588 7.295 15.141 hybrid contribution 0.511 -0.352 1.358 1.493 sum 4.702 12.235 8.653 15.707 Atomic orbital electron populations 1.22466 0.74105 1.06277 1.05697 1.45234 1.09121 1.04979 1.53448 1.21938 0.91204 0.83243 1.16587 1.98378 1.91595 1.08541 1.97411 1.22630 0.95729 0.90491 1.06714 1.70357 1.18817 1.12077 1.20310 1.22071 0.85734 0.89338 1.05614 1.21605 1.05511 0.90006 0.99062 1.87485 1.87880 1.17010 1.08450 1.22932 1.01189 0.93082 1.00457 1.18814 0.97561 0.90822 0.92456 1.21326 0.93047 1.26351 1.19511 0.94827 1.26730 0.98265 0.96427 0.99554 1.70816 1.38950 1.31288 1.15508 0.83096 0.74301 0.75998 0.73964 1.20173 1.20672 1.21000 1.22921 0.92563 1.06069 0.99641 1.22767 1.01407 0.95062 1.01583 0.87562 0.87923 0.88933 0.77951 0.87256 0.86504 0.92217 0.90652 0.92258 0.90741 0.88730 0.89273 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 10.66 127.77 1.36 2.49 16 2 N -0.44 -11.56 3.16 -526.51 -1.66 -13.22 16 3 C 0.01 0.31 7.49 83.11 0.62 0.93 16 4 Cl 0.01 0.24 28.93 -2.72 -0.08 0.16 16 5 C 0.00 -0.13 11.86 83.55 0.99 0.86 16 6 N -0.50 -15.75 11.25 -187.94 -2.11 -17.87 16 7 C 0.23 7.06 7.16 138.10 0.99 8.05 16 8 C -0.01 -0.38 6.03 71.24 0.43 0.05 16 9 S -0.24 -9.17 21.09 -56.49 -1.19 -10.36 16 10 C -0.03 -1.14 5.81 71.98 0.42 -0.73 16 11 C 0.00 0.23 1.01 -52.93 -0.05 0.18 16 12 C -0.56 -30.20 8.13 25.60 0.21 -29.99 16 13 H 0.03 1.90 7.82 -2.91 -0.02 1.88 16 14 C -0.01 -0.49 5.39 84.66 0.46 -0.04 16 15 N -0.93 -52.37 13.57 21.45 0.29 -52.07 16 16 Si 1.10 49.13 29.91 68.60 2.05 51.18 16 17 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 C -0.17 -7.28 9.93 30.62 0.30 -6.98 16 21 C -0.17 -7.33 8.75 30.62 0.27 -7.06 16 22 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.10 1.80 7.92 -2.38 -0.02 1.78 16 24 H 0.09 2.15 7.66 -2.39 -0.02 2.13 16 25 H 0.20 4.02 8.06 -2.91 -0.02 4.00 16 26 H 0.11 2.81 7.71 -2.39 -0.02 2.79 16 27 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 28 H 0.06 2.59 7.73 -2.39 -0.02 2.57 16 29 H 0.07 2.70 8.10 -2.39 -0.02 2.68 16 30 H 0.27 14.86 6.12 -92.70 -0.57 14.29 16 31 H 0.07 3.18 8.14 -2.39 -0.02 3.17 16 32 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 33 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 34 H 0.06 3.06 8.14 -2.38 -0.02 3.04 16 Total: -1.00 -63.25 321.42 4.59 -58.66 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 1.30 Total: 15.75 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 5.99 Total: -32.23 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -3.48 Total: -83.16 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.05 Total: 51.18 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.19 Total: -10.36 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -0.08 Total: 0.16 kcal Total: -63.25 4.59 -58.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118537581.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.543 kcal (2) G-P(sol) polarization free energy of solvation -63.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds