Wall clock time and date at job start Tue Mar 31 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99938 * 3 2 1 5 5 H 1.48504 * 109.47032 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00215 * 3 2 1 7 7 C 1.38817 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21573 * 120.00276 * 359.72080 * 13 12 11 15 15 C 1.47635 * 119.99650 * 179.72386 * 13 12 11 16 16 C 1.39695 * 120.15352 * 359.72092 * 15 13 12 17 17 C 1.37795 * 119.89283 * 179.74329 * 16 15 13 18 18 C 1.38620 * 120.20168 * 0.53551 * 17 16 15 19 19 Cl 1.73595 * 119.84438 * 179.76337 * 18 17 16 20 20 C 1.38355 * 120.31027 * 359.73750 * 18 17 16 21 21 C 1.38258 * 120.10435 * 359.97438 * 20 18 17 22 22 F 1.35104 * 120.10074 * 179.97438 * 21 20 18 23 23 H 0.96996 * 120.00458 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99857 * 0.02562 * 9 7 2 25 25 H 1.08995 * 109.47424 * 60.00294 * 10 9 7 26 26 H 1.09006 * 109.46868 * 299.99845 * 10 9 7 27 27 H 1.09009 * 109.46730 * 59.99787 * 11 10 9 28 28 H 1.08998 * 109.46846 * 300.00332 * 11 10 9 29 29 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 30 30 H 1.08000 * 120.05455 * 0.02562 * 16 15 13 31 31 H 1.07998 * 119.90317 * 180.25306 * 17 16 15 32 32 H 1.07997 * 119.94948 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8198 -0.0008 12 7 1.7965 -6.0884 -0.0025 13 6 1.1226 -7.2556 -0.0078 14 8 -0.0931 -7.2557 -0.0060 15 6 1.8609 -8.5341 -0.0157 16 6 3.2578 -8.5377 -0.0237 17 6 3.9414 -9.7342 -0.0257 18 6 3.2472 -10.9340 -0.0311 19 17 4.1178 -12.4358 -0.0398 20 6 1.8637 -10.9402 -0.0290 21 6 1.1649 -9.7472 -0.0209 22 9 -0.1862 -9.7533 -0.0194 23 1 -0.4850 0.8400 0.0004 24 1 0.3556 -2.3880 -0.0005 25 1 2.6855 -3.7149 0.8878 26 1 2.6841 -3.7140 -0.8922 27 1 0.4362 -4.7618 -0.8901 28 1 0.4384 -4.7622 0.8899 29 1 2.7665 -6.0883 -0.0044 30 1 3.8011 -7.6044 -0.0236 31 1 5.0214 -9.7372 -0.0277 32 1 1.3287 -11.8783 -0.0336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131011131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:28 Heat of formation + Delta-G solvation = -48.910269 kcal Electronic energy + Delta-G solvation = -18970.253924 eV Core-core repulsion = 15485.592425 eV Total energy + Delta-G solvation = -3484.661499 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.17726 -40.28161 -38.76889 -36.96175 -35.77430 -33.98535 -32.01989 -31.13341 -30.90112 -27.77659 -24.62510 -23.68062 -22.99418 -21.54696 -20.73851 -18.61492 -17.57162 -17.34471 -16.90432 -16.11925 -15.79478 -15.53657 -15.26130 -14.94589 -14.55995 -13.93267 -13.89492 -13.75422 -13.60351 -13.22830 -12.95338 -12.81806 -12.09803 -11.83978 -11.57288 -11.47955 -11.14481 -10.87063 -10.82052 -10.20009 -10.04946 -9.77084 -9.59661 -9.26478 -9.02951 -8.88388 -7.03004 -5.81987 -3.13231 0.08485 0.55695 1.43169 2.42613 2.99708 3.28260 3.41064 3.45315 3.46875 3.71987 4.06203 4.34022 4.38695 4.55039 4.59007 4.87778 5.21914 5.39644 5.45176 5.46764 5.48827 5.53425 5.72178 5.89885 6.07952 6.09978 6.37403 6.64334 6.65282 7.42828 7.62582 8.12213 8.35356 9.46625 10.00819 10.35408 11.40450 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.036257 B = 0.002654 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.081903 B =10547.436773 C =11299.051118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.714 5.714 13 C 0.552 3.448 14 O -0.521 6.521 15 C -0.163 4.163 16 C -0.045 4.045 17 C -0.129 4.129 18 C 0.013 3.987 19 Cl -0.051 7.051 20 C -0.159 4.159 21 C 0.174 3.826 22 F -0.105 7.105 23 H 0.258 0.742 24 H 0.387 0.613 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.399 0.601 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.625 -25.219 -0.077 26.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.017 3.983 11 C -0.013 4.013 12 N -0.366 5.366 13 C 0.338 3.662 14 O -0.398 6.398 15 C -0.167 4.167 16 C -0.063 4.063 17 C -0.147 4.147 18 C -0.015 4.015 19 Cl -0.022 7.022 20 C -0.178 4.178 21 C 0.153 3.847 22 F -0.083 7.083 23 H 0.067 0.933 24 H 0.221 0.779 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.234 0.766 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.866 -25.177 -0.073 26.692 hybrid contribution 0.499 0.758 -0.004 0.907 sum 9.365 -24.419 -0.078 26.153 Atomic orbital electron populations 1.69652 1.05171 1.26042 1.56951 1.24789 0.95565 0.97852 1.02551 0.86219 0.78501 0.83266 0.77867 1.21163 1.21590 1.21167 1.19135 0.91000 0.83826 1.43768 0.91057 1.42174 1.06025 0.99507 1.89737 1.20755 0.93452 0.85666 0.98474 1.21657 0.95515 0.81155 1.02958 1.45806 1.10396 1.05839 1.74569 1.17855 0.87291 0.83289 0.77809 1.90874 1.12890 1.87252 1.48755 1.20298 0.94513 0.93393 1.08544 1.21238 0.91815 0.98876 0.94420 1.21069 1.01362 0.90005 1.02312 1.20834 0.91652 0.88140 1.00837 1.98409 1.75916 1.31402 1.96476 1.20977 0.92910 0.98336 1.05619 1.17439 0.77883 0.92287 0.97108 1.91647 1.27133 1.97079 1.92466 0.93251 0.77950 0.95734 0.95743 0.90923 0.90902 0.76636 0.83316 0.83404 0.82915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.25 5.60 -59.91 -0.34 -18.58 16 10 C 0.14 2.73 6.37 -4.04 -0.03 2.71 16 11 C 0.11 1.84 5.79 -4.04 -0.02 1.82 16 12 N -0.71 -9.37 5.51 -61.31 -0.34 -9.70 16 13 C 0.55 8.01 7.77 -12.42 -0.10 7.91 16 14 O -0.52 -9.81 15.34 5.30 0.08 -9.73 16 15 C -0.16 -1.80 5.88 -104.91 -0.62 -2.42 16 16 C -0.04 -0.33 9.54 -39.20 -0.37 -0.70 16 17 C -0.13 -0.83 9.81 -39.60 -0.39 -1.22 16 18 C 0.01 0.09 6.32 -39.40 -0.25 -0.16 16 19 Cl -0.05 -0.34 28.94 -51.86 -1.50 -1.84 16 20 C -0.16 -1.34 9.79 -39.53 -0.39 -1.72 16 21 C 0.17 1.95 7.28 -38.97 -0.28 1.66 16 22 F -0.11 -1.46 15.55 2.25 0.04 -1.42 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 24 H 0.39 10.28 7.67 -40.82 -0.31 9.96 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.40 3.83 6.50 -40.82 -0.27 3.56 16 30 H 0.15 0.72 6.40 -52.49 -0.34 0.39 16 31 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 304.31 15.07 4.59 4.59 Total: -1.00 -33.28 304.31 -7.46 -40.74 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.00 Total: 5.73 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.69 Total: 0.53 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.05 Total: -55.64 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.28 -7.46 -40.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131011131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.171 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds