Wall clock time and date at job start Tue Mar 31 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00387 * 2 1 4 4 H 1.48495 * 109.47310 * 270.00117 * 3 2 1 5 5 H 1.48503 * 109.46955 * 30.00232 * 3 2 1 6 6 H 1.48502 * 109.47170 * 150.00123 * 3 2 1 7 7 C 1.38812 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00417 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99955 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00144 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47398 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47398 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99976 * 180.02562 * 12 11 10 14 14 O 1.21568 * 120.00319 * 359.97438 * 13 12 11 15 15 C 1.47734 * 119.99987 * 180.02562 * 13 12 11 16 16 C 1.39665 * 120.11061 * 359.97438 * 15 13 12 17 17 C 1.37834 * 119.90155 * 180.02562 * 16 15 13 18 18 C 1.38635 * 120.13436 * 359.97438 * 17 16 15 19 19 F 1.35100 * 119.88845 * 180.27880 * 18 17 16 20 20 C 1.38745 * 120.22977 * 0.02562 * 18 17 16 21 21 Cl 1.73600 * 119.95190 * 180.02562 * 20 18 17 22 22 C 1.37962 * 120.09106 * 359.97438 * 20 18 17 23 23 H 0.97005 * 119.99526 * 359.97438 * 1 2 3 24 24 H 0.97004 * 120.00272 * 0.02562 * 9 7 2 25 25 H 1.08996 * 109.47324 * 59.99874 * 10 9 7 26 26 H 1.09002 * 109.47404 * 300.00111 * 10 9 7 27 27 H 1.08996 * 109.47034 * 59.99638 * 11 10 9 28 28 H 1.08996 * 109.46623 * 300.00006 * 11 10 9 29 29 H 0.97004 * 119.99584 * 0.02562 * 12 11 10 30 30 H 1.08002 * 120.05137 * 0.04206 * 16 15 13 31 31 H 1.08001 * 119.93127 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.06256 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4710 -0.0011 11 6 5.6162 -2.1916 0.0004 12 7 6.3487 -3.4603 -0.0001 13 6 7.6964 -3.4603 0.0016 14 8 8.3043 -2.4076 0.0030 15 6 8.4350 -4.7398 0.0005 16 6 7.7390 -5.9506 -0.0018 17 6 8.4325 -7.1418 -0.0022 18 6 9.8188 -7.1400 -0.0011 19 9 10.4936 -8.3105 -0.0072 20 6 10.5159 -5.9404 0.0012 21 17 12.2518 -5.9466 0.0020 22 6 9.8312 -4.7426 0.0017 23 1 -0.4850 0.8401 0.0004 24 1 3.8646 -0.3622 0.0011 25 1 3.8490 -3.0416 -0.8918 26 1 3.8483 -3.0436 0.8881 27 1 5.8789 -1.6212 0.8913 28 1 5.8802 -1.6188 -0.8886 29 1 5.8636 -4.3003 -0.0017 30 1 6.6590 -5.9536 -0.0034 31 1 7.8948 -8.0784 -0.0036 32 1 10.3742 -3.8091 0.0038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133097543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:02 Heat of formation + Delta-G solvation = -45.986067 kcal Electronic energy + Delta-G solvation = -18835.315941 eV Core-core repulsion = 15350.781245 eV Total energy + Delta-G solvation = -3484.534696 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.51362 -40.52157 -38.66754 -36.98547 -36.00094 -34.14831 -31.83101 -31.59008 -31.01568 -28.20724 -24.62376 -23.68539 -23.04498 -21.59955 -20.76447 -18.78590 -17.96017 -17.61000 -17.10413 -16.31950 -15.81044 -15.73466 -15.59338 -14.56761 -14.51450 -14.13970 -14.10490 -13.90379 -13.75812 -13.33777 -13.33510 -12.69149 -12.03459 -11.99125 -11.66610 -11.57596 -11.47828 -11.04308 -10.89652 -10.21516 -10.20947 -9.67378 -9.62789 -9.35173 -9.12787 -8.96492 -7.36398 -5.84835 -3.22843 0.06208 0.46696 1.46651 2.30522 2.91351 3.23591 3.34843 3.38238 3.42889 3.44708 4.01893 4.25864 4.37298 4.53051 4.53219 4.89977 5.13978 5.25895 5.31249 5.37635 5.40566 5.52543 5.57127 5.58204 5.86286 5.99466 6.21145 6.49164 6.49392 7.30774 7.87694 7.99021 8.32988 9.10340 9.82619 10.00341 11.32873 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.041647 B = 0.002686 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.157602 B =10420.576435 C =11072.287180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.251 4.251 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.148 3.852 11 C 0.106 3.894 12 N -0.714 5.714 13 C 0.557 3.443 14 O -0.532 6.532 15 C -0.128 4.128 16 C -0.052 4.052 17 C -0.147 4.147 18 C 0.132 3.868 19 F -0.122 7.122 20 C -0.084 4.084 21 Cl -0.042 7.042 22 C -0.024 4.024 23 H 0.261 0.739 24 H 0.364 0.636 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.401 0.599 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.708 -16.541 -0.007 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.020 3.980 11 C -0.017 4.017 12 N -0.366 5.366 13 C 0.343 3.657 14 O -0.409 6.409 15 C -0.131 4.131 16 C -0.071 4.071 17 C -0.165 4.165 18 C 0.111 3.889 19 F -0.100 7.100 20 C -0.111 4.111 21 Cl -0.013 7.013 22 C -0.044 4.044 23 H 0.071 0.929 24 H 0.197 0.803 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.236 0.764 30 H 0.165 0.835 31 H 0.172 0.828 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 22.048 -15.881 -0.005 27.172 hybrid contribution 0.534 0.532 0.010 0.754 sum 22.582 -15.349 0.005 27.305 Atomic orbital electron populations 1.69699 1.05134 1.26057 1.56904 1.24679 0.95269 0.97363 1.01546 0.86542 0.79283 0.84735 0.77955 1.20881 1.21566 1.20149 1.18992 0.80160 0.94882 1.43999 0.89072 1.42522 1.04175 1.01794 1.91376 1.20733 0.87458 0.90404 0.99386 1.21681 0.92517 0.84652 1.02853 1.45789 1.05733 1.10627 1.74415 1.17949 0.82295 0.88265 0.77167 1.90818 1.68142 1.32430 1.49516 1.20008 0.93497 0.93856 1.05777 1.21359 1.00916 0.90518 0.94307 1.21103 0.91190 1.00486 1.03767 1.17661 0.90124 0.80316 1.00773 1.91570 1.80151 1.45067 1.93228 1.20879 0.86625 0.93685 1.09954 1.98408 1.07135 1.98842 1.96919 1.21089 0.92942 0.97280 0.93067 0.92884 0.80335 0.94811 0.94873 0.90949 0.90933 0.76369 0.83502 0.82838 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.71 13.97 55.49 0.78 -27.93 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.89 21.74 27.74 -169.99 -4.71 17.03 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 7 C -0.25 -6.90 10.47 -15.06 -0.16 -7.06 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.75 -17.21 5.41 -59.91 -0.32 -17.53 16 10 C 0.15 2.57 6.37 -4.04 -0.03 2.54 16 11 C 0.11 1.57 5.79 -4.04 -0.02 1.55 16 12 N -0.71 -8.17 5.51 -61.29 -0.34 -8.51 16 13 C 0.56 6.94 7.77 -12.38 -0.10 6.85 16 14 O -0.53 -8.65 16.34 5.31 0.09 -8.56 16 15 C -0.13 -1.21 5.87 -104.97 -0.62 -1.82 16 16 C -0.05 -0.35 9.54 -39.20 -0.37 -0.72 16 17 C -0.15 -0.93 10.01 -39.58 -0.40 -1.32 16 18 C 0.13 1.09 7.28 -39.25 -0.29 0.80 16 19 F -0.12 -1.08 16.83 2.25 0.04 -1.04 16 20 C -0.08 -0.75 6.32 -39.50 -0.25 -1.00 16 21 Cl -0.04 -0.38 28.60 -51.86 -1.48 -1.86 16 22 C -0.02 -0.23 9.37 -39.17 -0.37 -0.60 16 23 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 24 H 0.36 8.19 5.53 -40.82 -0.23 7.97 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.40 3.31 6.50 -40.82 -0.27 3.04 16 30 H 0.15 0.60 6.40 -52.49 -0.34 0.26 16 31 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.16 1.53 7.65 -52.49 -0.40 1.13 16 LS Contribution 302.48 15.07 4.56 4.56 Total: -1.00 -32.96 302.48 -7.02 -39.98 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -2.93 Total: 4.54 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.69 Total: -0.67 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.11 Total: -53.97 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 9 Polarization: -1.08 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.48 Total: -1.86 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.96 -7.02 -39.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133097543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.008 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds