Wall clock time and date at job start Tue Mar 31 2020 05:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00387 * 2 1 4 4 H 1.48495 * 109.47310 * 270.00117 * 3 2 1 5 5 H 1.48503 * 109.46955 * 30.00232 * 3 2 1 6 6 H 1.48502 * 109.47170 * 150.00123 * 3 2 1 7 7 C 1.38812 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00417 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99955 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00144 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47398 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47398 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99976 * 180.02562 * 12 11 10 14 14 O 1.21568 * 120.00319 * 359.97438 * 13 12 11 15 15 C 1.47734 * 119.99987 * 180.02562 * 13 12 11 16 16 C 1.39665 * 120.11061 * 359.97438 * 15 13 12 17 17 C 1.37834 * 119.90155 * 180.02562 * 16 15 13 18 18 C 1.38635 * 120.13436 * 359.97438 * 17 16 15 19 19 F 1.35100 * 119.88845 * 180.27880 * 18 17 16 20 20 C 1.38745 * 120.22977 * 0.02562 * 18 17 16 21 21 Cl 1.73600 * 119.95190 * 180.02562 * 20 18 17 22 22 C 1.37962 * 120.09106 * 359.97438 * 20 18 17 23 23 H 0.97005 * 119.99526 * 359.97438 * 1 2 3 24 24 H 0.97004 * 120.00272 * 0.02562 * 9 7 2 25 25 H 1.08996 * 109.47324 * 59.99874 * 10 9 7 26 26 H 1.09002 * 109.47404 * 300.00111 * 10 9 7 27 27 H 1.08996 * 109.47034 * 59.99638 * 11 10 9 28 28 H 1.08996 * 109.46623 * 300.00006 * 11 10 9 29 29 H 0.97004 * 119.99584 * 0.02562 * 12 11 10 30 30 H 1.08002 * 120.05137 * 0.04206 * 16 15 13 31 31 H 1.08001 * 119.93127 * 179.97438 * 17 16 15 32 32 H 1.08001 * 120.06256 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4710 -0.0011 11 6 5.6162 -2.1916 0.0004 12 7 6.3487 -3.4603 -0.0001 13 6 7.6964 -3.4603 0.0016 14 8 8.3043 -2.4076 0.0030 15 6 8.4350 -4.7398 0.0005 16 6 7.7390 -5.9506 -0.0018 17 6 8.4325 -7.1418 -0.0022 18 6 9.8188 -7.1400 -0.0011 19 9 10.4936 -8.3105 -0.0072 20 6 10.5159 -5.9404 0.0012 21 17 12.2518 -5.9466 0.0020 22 6 9.8312 -4.7426 0.0017 23 1 -0.4850 0.8401 0.0004 24 1 3.8646 -0.3622 0.0011 25 1 3.8490 -3.0416 -0.8918 26 1 3.8483 -3.0436 0.8881 27 1 5.8789 -1.6212 0.8913 28 1 5.8802 -1.6188 -0.8886 29 1 5.8636 -4.3003 -0.0017 30 1 6.6590 -5.9536 -0.0034 31 1 7.8948 -8.0784 -0.0036 32 1 10.3742 -3.8091 0.0038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133097543.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:01 Heat of formation + Delta-G solvation = -68.804196 kcal Electronic energy + Delta-G solvation = -18836.305410 eV Core-core repulsion = 15350.781245 eV Total energy + Delta-G solvation = -3485.524164 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.16692 -41.38518 -39.48212 -37.67104 -37.44920 -35.64029 -33.55087 -32.21987 -32.06744 -29.64175 -25.86067 -24.53004 -24.17386 -23.09554 -21.72328 -19.96477 -19.31703 -18.56119 -17.90840 -16.99452 -16.95141 -16.68656 -16.51820 -16.27769 -15.63687 -15.32336 -15.19094 -14.98863 -14.60408 -14.58786 -14.09132 -14.08438 -13.43216 -13.22125 -12.74530 -12.67421 -12.59951 -12.52570 -12.14955 -12.06367 -11.81653 -11.26356 -11.01931 -10.33176 -10.20106 -9.88976 -9.34227 -8.03660 -5.38706 -0.62152 -0.13766 0.80371 1.41063 1.42560 1.49697 1.51211 1.93438 2.46739 2.48405 2.82128 3.28614 3.40962 3.47624 3.77848 3.85595 3.89237 3.97243 4.22141 4.30783 4.56718 4.63894 4.66042 4.83746 4.94953 5.01814 5.12211 5.27187 5.42586 5.74791 6.19363 6.41037 7.04383 7.07360 7.80277 7.96849 9.17076 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.041647 B = 0.002686 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.157602 B =10420.576435 C =11072.287180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.252 1.252 7 C -0.235 4.235 8 H 0.065 0.935 9 N -0.760 5.760 10 C 0.148 3.852 11 C 0.121 3.879 12 N -0.701 5.701 13 C 0.559 3.441 14 O -0.576 6.576 15 C -0.139 4.139 16 C -0.037 4.037 17 C -0.133 4.133 18 C 0.127 3.873 19 F -0.126 7.126 20 C -0.093 4.093 21 Cl -0.048 7.048 22 C -0.032 4.032 23 H 0.259 0.741 24 H 0.366 0.634 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.419 0.581 30 H 0.179 0.821 31 H 0.187 0.813 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.641 -17.883 0.012 28.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.253 4.253 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.177 1.177 7 C -0.366 4.366 8 H 0.083 0.917 9 N -0.406 5.406 10 C 0.022 3.978 11 C -0.004 4.004 12 N -0.354 5.354 13 C 0.347 3.653 14 O -0.457 6.457 15 C -0.142 4.142 16 C -0.055 4.055 17 C -0.151 4.151 18 C 0.107 3.893 19 F -0.104 7.104 20 C -0.121 4.121 21 Cl -0.019 7.019 22 C -0.051 4.051 23 H 0.068 0.932 24 H 0.200 0.800 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.257 0.743 30 H 0.196 0.804 31 H 0.204 0.796 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 23.023 -17.290 0.015 28.792 hybrid contribution 0.256 0.780 0.000 0.821 sum 23.279 -16.510 0.015 28.539 Atomic orbital electron populations 1.69867 1.07055 1.26771 1.59385 1.25480 0.96089 1.01221 1.02485 0.85466 0.78702 0.79843 0.78142 1.20444 1.22282 1.17688 1.19009 0.82213 0.93769 1.41622 0.91661 1.42561 1.02760 1.04029 1.91268 1.20862 0.88515 0.88262 1.00153 1.21302 0.90939 0.85929 1.02186 1.45555 1.05502 1.10345 1.73986 1.18331 0.82243 0.88758 0.75948 1.90799 1.68984 1.34278 1.51593 1.19785 0.93214 0.93432 1.07808 1.21661 1.02334 0.89273 0.92242 1.21446 0.90234 1.01667 1.01803 1.17902 0.90978 0.79791 1.00630 1.91565 1.80435 1.45173 1.93241 1.20906 0.86439 0.93952 1.10782 1.98403 1.07652 1.98857 1.96999 1.21010 0.93249 0.97157 0.93734 0.93247 0.80043 0.93673 0.93785 0.91794 0.91661 0.74267 0.80386 0.79574 0.83531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.48 13.97 21.65 0.30 -61.18 16 2 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.95 44.61 27.74 68.60 1.90 46.51 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.25 -10.72 6.52 99.48 0.65 -10.07 16 7 C -0.24 -12.86 10.47 84.03 0.88 -11.98 16 8 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 9 N -0.76 -33.47 5.41 -343.46 -1.86 -35.33 16 10 C 0.15 4.80 6.37 86.38 0.55 5.35 16 11 C 0.12 3.32 5.79 86.38 0.50 3.82 16 12 N -0.70 -14.24 5.51 -466.09 -2.57 -16.80 16 13 C 0.56 13.05 7.77 86.75 0.67 13.73 16 14 O -0.58 -18.54 16.34 -3.93 -0.06 -18.60 16 15 C -0.14 -2.35 5.87 -20.09 -0.12 -2.47 16 16 C -0.04 -0.35 9.54 22.52 0.21 -0.14 16 17 C -0.13 -1.17 10.01 22.27 0.22 -0.95 16 18 C 0.13 1.81 7.28 22.49 0.16 1.97 16 19 F -0.13 -1.97 16.83 44.97 0.76 -1.22 16 20 C -0.09 -1.57 6.32 22.33 0.14 -1.43 16 21 Cl -0.05 -0.84 28.60 -2.72 -0.08 -0.91 16 22 C -0.03 -0.58 9.37 22.54 0.21 -0.37 16 23 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 24 H 0.37 15.70 5.53 -92.71 -0.51 15.19 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.42 5.35 6.50 -92.71 -0.60 4.75 16 30 H 0.18 0.54 6.40 -2.91 -0.02 0.52 16 31 H 0.19 0.46 8.06 -2.91 -0.02 0.44 16 32 H 0.15 2.94 7.65 -2.91 -0.02 2.91 16 Total: -1.00 -72.07 302.48 2.31 -69.76 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.01 Total: 13.28 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 3.91 Total: 4.50 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -4.12 Total: -113.31 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.06 Total: -18.60 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.76 Total: -1.22 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.51 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.91 kcal Total: -72.07 2.31 -69.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133097543.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.952 kcal (2) G-P(sol) polarization free energy of solvation -72.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds