Wall clock time and date at job start Tue Mar 31 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 120.00181 * 2 1 4 4 H 1.48493 * 109.47400 * 269.99861 * 3 2 1 5 5 H 1.48509 * 109.47316 * 29.99882 * 3 2 1 6 6 H 1.48502 * 109.47297 * 149.99492 * 3 2 1 7 7 C 1.38805 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00174 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99943 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47030 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47035 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21565 * 120.00159 * 0.02562 * 13 12 11 15 15 C 1.47776 * 120.00153 * 179.97438 * 13 12 11 16 16 C 1.39610 * 120.14030 * 359.73483 * 15 13 12 17 17 C 1.38125 * 119.83421 * 179.73889 * 16 15 13 18 18 F 1.35105 * 119.93061 * 180.24992 * 17 16 15 19 19 C 1.38620 * 120.12967 * 0.52983 * 17 16 15 20 20 C 1.38239 * 120.29611 * 359.72251 * 19 17 16 21 21 C 1.38155 * 120.15666 * 0.02562 * 20 19 17 22 22 Cl 1.73593 * 120.06820 * 179.97438 * 21 20 19 23 23 H 0.97000 * 119.99481 * 0.02562 * 1 2 3 24 24 H 0.96999 * 119.99971 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.47074 * 60.00350 * 10 9 7 26 26 H 1.09004 * 109.47714 * 300.00259 * 10 9 7 27 27 H 1.09004 * 109.46930 * 60.00232 * 11 10 9 28 28 H 1.09000 * 109.47312 * 300.00176 * 11 10 9 29 29 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 30 30 H 1.07997 * 120.07946 * 359.96366 * 16 15 13 31 31 H 1.08001 * 119.85222 * 179.69291 * 19 17 16 32 32 H 1.07993 * 119.92419 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 7 1.7962 -6.0885 0.0005 13 6 1.1222 -7.2556 0.0006 14 8 -0.0934 -7.2556 -0.0003 15 6 1.8610 -8.5355 0.0007 16 6 3.2571 -8.5390 -0.0050 17 6 3.9413 -9.7389 0.0006 18 9 5.2923 -9.7445 0.0002 19 6 3.2445 -10.9372 0.0006 20 6 1.8621 -10.9400 0.0009 21 6 1.1656 -9.7469 0.0006 22 17 -0.5703 -9.7531 0.0003 23 1 -0.4849 0.8401 -0.0004 24 1 0.3555 -2.3880 -0.0002 25 1 2.6846 -3.7145 0.8906 26 1 2.6847 -3.7146 -0.8894 27 1 0.4374 -4.7617 -0.8904 28 1 0.4366 -4.7621 0.8896 29 1 2.7662 -6.0885 0.0016 30 1 3.8008 -7.6058 -0.0100 31 1 3.7840 -11.8728 -0.0001 32 1 1.3253 -11.8771 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134269535.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:56 Heat of formation + Delta-G solvation = -41.001524 kcal Electronic energy + Delta-G solvation = -19058.337882 eV Core-core repulsion = 15574.019332 eV Total energy + Delta-G solvation = -3484.318550 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.36604 -40.38800 -38.51463 -36.59785 -35.73303 -33.97595 -32.19858 -31.01697 -30.64785 -27.80775 -24.78017 -23.63561 -22.87725 -21.52414 -20.75724 -18.65433 -17.35280 -17.12728 -16.99086 -16.22843 -16.13032 -15.44455 -15.42334 -14.77833 -14.57361 -14.07921 -13.90550 -13.74769 -13.21051 -13.14762 -12.94131 -12.82955 -12.06475 -11.54868 -11.48545 -11.37197 -11.13115 -10.84063 -10.81946 -10.12903 -9.83459 -9.74462 -9.62269 -9.09577 -8.97760 -8.85298 -7.01658 -5.81260 -3.12290 0.17560 0.49536 1.85447 2.47243 3.01348 3.30589 3.41529 3.46403 3.48415 3.65007 4.07230 4.19775 4.52369 4.57118 4.66785 4.98710 5.11902 5.32925 5.44365 5.46991 5.48026 5.58423 5.73939 5.91615 6.10026 6.11141 6.39821 6.66177 6.67499 7.45682 7.64237 8.14774 8.36263 9.47629 10.01808 10.36515 11.41263 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.024485 B = 0.003149 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.266052 B = 8890.891533 C =10013.710104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.112 3.888 12 N -0.715 5.715 13 C 0.548 3.452 14 O -0.509 6.509 15 C -0.094 4.094 16 C -0.111 4.111 17 C 0.097 3.903 18 F -0.131 7.131 19 C -0.121 4.121 20 C -0.091 4.091 21 C -0.001 4.001 22 Cl -0.020 7.020 23 H 0.257 0.743 24 H 0.387 0.613 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.398 0.602 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.747 -25.407 0.016 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.016 3.984 11 C -0.011 4.011 12 N -0.367 5.367 13 C 0.333 3.667 14 O -0.384 6.384 15 C -0.098 4.098 16 C -0.131 4.131 17 C 0.078 3.922 18 F -0.109 7.109 19 C -0.140 4.140 20 C -0.110 4.110 21 C -0.029 4.029 22 Cl 0.010 6.990 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.233 0.767 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.860 -25.230 0.025 25.902 hybrid contribution 0.860 0.938 -0.012 1.273 sum 6.720 -24.292 0.013 25.204 Atomic orbital electron populations 1.69672 1.05157 1.25882 1.57107 1.24782 0.95568 0.97835 1.02591 0.86146 0.78616 0.83567 0.77560 1.21608 1.21674 1.20685 1.19188 0.91039 0.83833 1.43559 0.91018 1.42179 1.06020 0.99516 1.89720 1.20763 0.93490 0.85700 0.98480 1.21641 0.95454 0.81122 1.02932 1.45858 1.10410 1.05913 1.74567 1.17899 0.87427 0.83215 0.78153 1.90904 1.12489 1.86967 1.48062 1.19728 0.92566 0.93800 1.03723 1.21321 0.93071 0.98325 1.00399 1.17534 0.77369 0.94159 1.03140 1.91558 1.28253 1.97345 1.93791 1.21291 0.94173 0.97785 1.00724 1.20943 0.93171 0.97382 0.99507 1.21094 0.87514 0.93338 1.00941 1.98444 1.05967 1.98678 1.95909 0.93332 0.77956 0.95745 0.95763 0.90893 0.90902 0.76732 0.83246 0.83318 0.83206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.36 5.60 -59.91 -0.34 -18.69 16 10 C 0.14 2.76 6.37 -4.04 -0.03 2.73 16 11 C 0.11 1.87 5.79 -4.04 -0.02 1.84 16 12 N -0.72 -9.53 5.51 -61.26 -0.34 -9.87 16 13 C 0.55 7.76 7.77 -12.36 -0.10 7.67 16 14 O -0.51 -8.87 13.96 5.31 0.07 -8.79 16 15 C -0.09 -1.05 5.88 -104.95 -0.62 -1.66 16 16 C -0.11 -0.99 9.52 -39.11 -0.37 -1.36 16 17 C 0.10 0.80 7.29 -39.48 -0.29 0.51 16 18 F -0.13 -1.15 17.26 2.25 0.04 -1.11 16 19 C -0.12 -0.79 10.02 -39.44 -0.40 -1.19 16 20 C -0.09 -0.66 9.82 -39.61 -0.39 -1.05 16 21 C 0.00 -0.01 6.35 -39.07 -0.25 -0.25 16 22 Cl -0.02 -0.24 26.02 -51.86 -1.35 -1.59 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.39 10.30 7.67 -40.82 -0.31 9.99 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.40 4.13 6.51 -40.82 -0.27 3.86 16 30 H 0.15 1.05 6.40 -52.49 -0.34 0.72 16 31 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 301.97 15.07 4.55 4.55 Total: -1.00 -32.60 301.97 -7.35 -39.96 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.00 Total: 5.93 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.70 Total: -0.15 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.05 Total: -55.98 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.35 Total: -1.59 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.60 -7.35 -39.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134269535.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.043 kcal (2) G-P(sol) polarization free energy of solvation -32.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds