Wall clock time and date at job start Tue Mar 31 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48502 * 109.47271 * 270.00409 * 3 2 1 5 5 H 1.48505 * 109.46880 * 29.99889 * 3 2 1 6 6 H 1.48495 * 109.47179 * 149.99860 * 3 2 1 7 7 C 1.38805 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00392 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00165 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47037 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47433 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00271 * 180.02562 * 12 11 10 14 14 O 1.21557 * 119.99487 * 0.26790 * 13 12 11 15 15 C 1.47776 * 119.99773 * 179.97438 * 13 12 11 16 16 C 1.39633 * 120.14366 * 359.72079 * 15 13 12 17 17 C 1.37897 * 119.90971 * 179.77094 * 16 15 13 18 18 C 1.38392 * 120.21105 * 0.52887 * 17 16 15 19 19 C 1.38470 * 120.29127 * 359.70116 * 18 17 16 20 20 F 1.35102 * 119.95892 * 180.02562 * 19 18 17 21 21 C 1.38379 * 120.07734 * 0.04219 * 19 18 17 22 22 Cl 1.73602 * 120.09832 * 179.97438 * 21 19 18 23 23 H 0.97001 * 120.00289 * 359.97438 * 1 2 3 24 24 H 0.96999 * 119.99753 * 359.97438 * 9 7 2 25 25 H 1.08992 * 109.47647 * 59.99773 * 10 9 7 26 26 H 1.08999 * 109.47453 * 299.99002 * 10 9 7 27 27 H 1.08996 * 109.47407 * 59.99335 * 11 10 9 28 28 H 1.09000 * 109.46986 * 299.99564 * 11 10 9 29 29 H 0.96999 * 119.99685 * 359.97438 * 12 11 10 30 30 H 1.08002 * 120.04417 * 359.97438 * 16 15 13 31 31 H 1.08007 * 119.89454 * 180.25230 * 17 16 15 32 32 H 1.08005 * 119.85563 * 179.72242 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0638 -4.8196 0.0021 12 7 1.7963 -6.0884 0.0026 13 6 1.1224 -7.2556 0.0025 14 8 -0.0931 -7.2555 -0.0030 15 6 1.8614 -8.5354 0.0024 16 6 3.2577 -8.5388 -0.0034 17 6 3.9423 -9.7358 0.0014 18 6 3.2500 -10.9341 0.0009 19 6 1.8653 -10.9407 0.0018 20 9 1.1962 -12.1144 0.0018 21 6 1.1661 -9.7465 0.0024 22 17 -0.5699 -9.7541 0.0029 23 1 -0.4850 0.8400 0.0004 24 1 0.3556 -2.3880 0.0005 25 1 2.6841 -3.7141 0.8920 26 1 2.6853 -3.7149 -0.8879 27 1 0.4374 -4.7625 -0.8881 28 1 0.4369 -4.7613 0.8918 29 1 2.7663 -6.0884 0.0023 30 1 3.8007 -7.6053 -0.0083 31 1 5.0224 -9.7382 0.0010 32 1 3.7921 -11.8683 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134327551.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:29 Heat of formation + Delta-G solvation = -39.113522 kcal Electronic energy + Delta-G solvation = -19079.877470 eV Core-core repulsion = 15595.640789 eV Total energy + Delta-G solvation = -3484.236680 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.34652 -40.37723 -38.47913 -36.67820 -35.73732 -33.95999 -31.95003 -31.15144 -30.74866 -27.79146 -24.75649 -23.45801 -23.03585 -21.54451 -20.75060 -18.68696 -17.38980 -16.98040 -16.88256 -16.33382 -16.20768 -15.49554 -15.40274 -14.75280 -14.58517 -14.00749 -13.90392 -13.75955 -13.22036 -12.95929 -12.90811 -12.66827 -12.12440 -11.81524 -11.48602 -11.33245 -11.13707 -10.84782 -10.82716 -10.13677 -9.83920 -9.61677 -9.51793 -9.13899 -9.02218 -8.87175 -7.02446 -5.81885 -3.13000 0.19363 0.50350 1.80651 2.49771 2.96090 3.32612 3.40766 3.45458 3.47725 3.68818 4.16118 4.25434 4.42657 4.55733 4.65962 4.93760 5.22959 5.36011 5.45211 5.47383 5.52641 5.67580 5.73581 5.91136 6.09791 6.11178 6.39509 6.65469 6.67096 7.46306 7.63260 8.15814 8.35538 9.46892 10.01225 10.35781 11.40627 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.037550 B = 0.002918 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.502403 B = 9592.624299 C =10317.678825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.111 3.889 12 N -0.715 5.715 13 C 0.548 3.452 14 O -0.510 6.510 15 C -0.096 4.096 16 C -0.086 4.086 17 C -0.094 4.094 18 C -0.122 4.122 19 C 0.099 3.901 20 F -0.124 7.124 21 C -0.029 4.029 22 Cl -0.008 7.008 23 H 0.257 0.743 24 H 0.387 0.613 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.398 0.602 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.853 -24.184 0.030 25.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.012 4.012 12 N -0.367 5.367 13 C 0.333 3.667 14 O -0.385 6.385 15 C -0.100 4.100 16 C -0.105 4.105 17 C -0.112 4.112 18 C -0.141 4.141 19 C 0.079 3.921 20 F -0.103 7.103 21 C -0.058 4.058 22 Cl 0.021 6.979 23 H 0.067 0.933 24 H 0.220 0.780 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.233 0.767 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.877 -24.059 0.035 25.315 hybrid contribution 0.414 0.693 -0.009 0.808 sum 8.291 -23.365 0.027 24.793 Atomic orbital electron populations 1.69665 1.05165 1.25901 1.57062 1.24783 0.95561 0.97840 1.02586 0.86150 0.78611 0.83587 0.77558 1.21609 1.21673 1.20688 1.19180 0.91028 0.83830 1.43603 0.91018 1.42181 1.06032 0.99525 1.89716 1.20754 0.93476 0.85687 0.98448 1.21639 0.95472 0.81131 1.02930 1.45823 1.10384 1.05809 1.74667 1.17909 0.87423 0.83263 0.78148 1.90901 1.12649 1.87013 1.47968 1.19781 0.93726 0.92774 1.03725 1.21447 0.92036 0.99633 0.97387 1.21076 1.01036 0.90864 0.98234 1.21339 0.91284 1.00674 1.00793 1.17307 0.90130 0.80233 1.04474 1.91562 1.80478 1.44465 1.93758 1.21109 0.88216 0.92661 1.03846 1.98450 1.04872 1.98622 1.95908 0.93318 0.77955 0.95766 0.95760 0.90930 0.90928 0.76701 0.83774 0.83548 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.21 5.60 -59.92 -0.34 -18.54 16 10 C 0.14 2.72 6.37 -4.04 -0.03 2.70 16 11 C 0.11 1.84 5.79 -4.04 -0.02 1.82 16 12 N -0.71 -9.27 5.51 -61.27 -0.34 -9.60 16 13 C 0.55 7.78 7.77 -12.36 -0.10 7.68 16 14 O -0.51 -9.09 13.97 5.32 0.07 -9.01 16 15 C -0.10 -1.08 5.88 -104.95 -0.62 -1.69 16 16 C -0.09 -0.64 9.54 -39.19 -0.37 -1.01 16 17 C -0.09 -0.53 10.03 -39.65 -0.40 -0.93 16 18 C -0.12 -0.81 10.02 -39.44 -0.40 -1.20 16 19 C 0.10 0.97 7.27 -39.44 -0.29 0.68 16 20 F -0.12 -1.31 16.83 2.25 0.04 -1.27 16 21 C -0.03 -0.35 6.36 -39.00 -0.25 -0.60 16 22 Cl -0.01 -0.11 25.68 -51.86 -1.33 -1.45 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 24 H 0.39 10.25 7.67 -40.82 -0.31 9.94 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.40 3.83 6.50 -40.82 -0.27 3.56 16 30 H 0.14 0.72 6.40 -52.49 -0.34 0.38 16 31 H 0.15 0.36 8.06 -52.48 -0.42 -0.06 16 32 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 LS Contribution 301.42 15.07 4.54 4.54 Total: -1.00 -33.19 301.42 -7.36 -40.55 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.00 Total: 4.94 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.71 Total: 0.13 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.05 Total: -55.47 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.33 Total: -1.45 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -33.19 -7.36 -40.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134327551.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.434 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds