Wall clock time and date at job start Tue Mar 31 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81391 * 102.99779 * 2 1 4 4 C 1.52997 * 109.47439 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47669 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47297 * 179.97438 * 5 4 3 7 7 C 1.38402 * 119.99901 * 180.02562 * 6 5 4 8 8 N 1.32744 * 119.44067 * 359.72761 * 7 6 5 9 9 C 1.31466 * 121.74353 * 179.75261 * 8 7 6 10 10 C 1.40792 * 120.38663 * 0.52324 * 9 8 7 11 11 C 1.41198 * 120.56424 * 179.76784 * 10 9 8 12 12 H 1.08006 * 119.99961 * 23.63283 * 11 10 9 13 13 C 1.39864 * 120.00340 * 203.62569 * 11 10 9 14 14 N 1.30907 * 119.99625 * 17.65037 * 13 11 10 15 15 Si 1.86795 * 120.00445 * 197.65606 * 13 11 10 16 16 H 1.48504 * 109.47295 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47470 * 120.00096 * 15 13 11 18 18 H 1.48506 * 109.47107 * 239.99832 * 15 13 11 19 19 C 1.41282 * 118.87387 * 359.74573 * 10 9 8 20 20 C 1.36672 * 118.39407 * 359.97438 * 19 10 9 21 21 Cl 1.73598 * 120.25831 * 179.97438 * 20 19 10 22 22 H 1.09004 * 109.46805 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47019 * 299.99322 * 1 2 3 24 24 H 1.08998 * 109.47427 * 60.00423 * 1 2 3 25 25 H 1.09004 * 109.47422 * 60.00065 * 3 2 1 26 26 H 1.09007 * 109.47497 * 300.00455 * 3 2 1 27 27 H 1.09004 * 109.47272 * 59.99853 * 4 3 2 28 28 H 1.08997 * 109.47152 * 300.00546 * 4 3 2 29 29 H 1.08999 * 109.46991 * 299.99971 * 5 4 3 30 30 H 1.08996 * 109.46552 * 60.00126 * 5 4 3 31 31 H 0.97005 * 119.99677 * 0.02562 * 6 5 4 32 32 H 1.07997 * 119.80928 * 180.25185 * 9 8 7 33 33 H 0.97004 * 119.99808 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.80238 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7422 1.9400 -0.0006 5 6 4.0864 3.4308 0.0000 6 7 5.5421 3.5960 0.0000 7 6 6.0945 4.8649 0.0011 8 7 5.2951 5.9246 -0.0034 9 6 5.7709 7.1501 0.0022 10 6 7.1609 7.3744 0.0022 11 6 7.6761 8.6890 0.0033 12 1 7.0753 9.5041 0.3791 13 6 8.9644 8.9357 -0.4821 14 7 9.5583 8.0502 -1.2416 15 14 9.8375 10.5286 -0.0466 16 1 8.9574 11.3552 0.8179 17 1 11.0965 10.2208 0.6783 18 1 10.1527 11.2764 -1.2903 19 6 8.0315 6.2616 0.0015 20 6 7.4850 5.0089 0.0015 21 17 8.5097 3.6076 0.0000 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.8031 2.2371 0.8900 26 1 1.8030 2.2371 -0.8900 27 1 4.1609 1.4705 -0.8909 28 1 4.1616 1.4703 0.8890 29 1 3.6671 3.9009 -0.8895 30 1 3.6679 3.8998 0.8904 31 1 6.1187 2.8159 -0.0008 32 1 5.0918 7.9898 0.0024 33 1 10.4517 8.2215 -1.5785 34 1 9.1028 6.3977 0.0019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155981647.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:01 Heat of formation + Delta-G solvation = 7.056050 kcal Electronic energy + Delta-G solvation = -17258.622124 eV Core-core repulsion = 14342.600682 eV Total energy + Delta-G solvation = -2916.021441 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.060 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.77256 -36.09074 -35.56833 -34.08505 -32.44705 -30.53194 -29.36211 -29.06102 -26.21965 -24.39505 -22.36894 -21.17874 -20.89196 -17.46779 -16.68345 -16.46041 -15.73772 -15.66961 -15.00352 -14.31620 -14.17378 -13.99149 -13.67265 -13.39338 -13.32175 -13.06723 -12.52724 -12.27691 -11.84515 -11.77508 -11.43761 -11.26317 -11.14496 -11.11656 -10.89440 -10.71575 -10.38394 -10.17631 -9.85517 -9.51974 -8.84292 -8.30514 -8.16416 -7.89668 -6.95307 -6.71562 -4.32705 1.45600 2.38505 2.49001 2.78013 3.04822 3.09493 3.15147 3.18895 3.87773 4.08225 4.54461 4.77615 4.86056 4.86498 4.95671 5.19722 5.40982 5.47742 5.50010 5.54774 5.83236 5.95671 6.19875 6.26913 6.42539 6.61512 6.92018 7.04888 7.13705 7.62337 7.66970 8.08168 8.33564 8.39492 8.65863 8.70631 9.50921 10.10424 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.034433 B = 0.003134 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.966635 B = 8931.341163 C = 9641.392216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.271 6.271 3 C -0.076 4.076 4 C -0.117 4.117 5 C 0.155 3.845 6 N -0.742 5.742 7 C 0.289 3.711 8 N -0.503 5.503 9 C 0.014 3.986 10 C 0.038 3.962 11 C -0.451 4.451 12 H 0.083 0.917 13 C 0.073 3.927 14 N -0.797 5.797 15 Si 0.910 3.090 16 H -0.260 1.260 17 H -0.272 1.272 18 H -0.275 1.275 19 C -0.089 4.089 20 C -0.102 4.102 21 Cl -0.114 7.114 22 H 0.099 0.901 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.397 0.603 32 H 0.134 0.866 33 H 0.282 0.718 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.433 -9.472 1.763 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.045 6.045 3 C -0.225 4.225 4 C -0.156 4.156 5 C 0.028 3.972 6 N -0.383 5.383 7 C 0.056 3.944 8 N -0.218 5.218 9 C -0.145 4.145 10 C 0.032 3.968 11 C -0.482 4.482 12 H 0.101 0.899 13 C -0.145 4.145 14 N -0.423 5.423 15 Si 0.735 3.265 16 H -0.183 1.183 17 H -0.197 1.197 18 H -0.200 1.200 19 C -0.116 4.116 20 C -0.135 4.135 21 Cl -0.086 7.086 22 H 0.118 0.882 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.233 0.767 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.558 -10.565 1.615 14.337 hybrid contribution 0.862 1.453 0.028 1.690 sum -8.695 -9.112 1.642 12.702 Atomic orbital electron populations 1.23359 0.94316 1.06342 1.04937 1.86927 1.07226 1.12263 1.98105 1.23289 1.00317 0.93474 1.05376 1.21526 0.92554 0.97839 1.03647 1.20810 0.82525 0.92611 1.01271 1.43698 1.04755 1.03868 1.86016 1.17393 0.86086 0.86019 1.04931 1.66754 1.38179 0.98789 1.18123 1.22339 0.93375 0.91433 1.07339 1.18314 0.91348 0.93819 0.93297 1.19363 0.98935 0.93565 1.36341 0.89871 1.25911 0.97404 0.98646 0.92522 1.69809 1.14164 1.35290 1.23021 0.86223 0.79615 0.81436 0.79270 1.18332 1.19705 1.19990 1.21307 1.01447 0.88677 1.00155 1.20927 0.88883 0.88000 1.15641 1.98242 1.69044 1.43624 1.97731 0.88242 0.90503 0.90499 0.89726 0.89717 0.90676 0.90696 0.92870 0.92891 0.76730 0.84824 0.90691 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.76 101.05 1.09 0.21 16 2 S -0.27 -2.86 22.38 -107.50 -2.41 -5.27 16 3 C -0.08 -0.78 5.94 37.16 0.22 -0.56 16 4 C -0.12 -1.39 5.34 -26.73 -0.14 -1.54 16 5 C 0.15 2.36 5.66 -4.04 -0.02 2.34 16 6 N -0.74 -13.60 5.64 -60.32 -0.34 -13.94 16 7 C 0.29 6.46 7.48 -155.06 -1.16 5.30 16 8 N -0.50 -11.70 9.52 -11.75 -0.11 -11.81 16 9 C 0.01 0.33 10.97 -16.74 -0.18 0.15 16 10 C 0.04 0.96 5.59 -106.65 -0.60 0.37 16 11 C -0.45 -11.31 9.06 -37.85 -0.34 -11.65 16 12 H 0.08 1.98 7.90 -52.48 -0.41 1.56 16 13 C 0.07 1.75 5.17 -17.34 -0.09 1.66 16 14 N -0.80 -19.91 10.92 55.54 0.61 -19.30 16 15 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 16 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 17 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 19 C -0.09 -2.23 8.53 -38.99 -0.33 -2.56 16 20 C -0.10 -2.35 6.32 -39.57 -0.25 -2.60 16 21 Cl -0.11 -2.24 27.56 -51.86 -1.43 -3.67 16 22 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 23 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 26 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.40 6.75 7.08 -40.82 -0.29 6.46 16 32 H 0.13 2.92 8.06 -52.49 -0.42 2.49 16 33 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 34 H 0.14 3.63 6.19 -52.49 -0.32 3.30 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -26.71 318.55 -10.11 -36.82 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.39 Total: 8.31 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.81 Total: -8.90 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.15 Total: -45.05 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -2.41 Total: -5.27 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -1.43 Total: -3.67 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.71 -10.11 -36.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155981647.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.878 kcal (2) G-P(sol) polarization free energy of solvation -26.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds