Wall clock time and date at job start Tue Mar 31 2020 05:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46939 * 2 1 4 4 H 1.08996 * 109.47034 * 307.05776 * 3 2 1 5 5 C 1.50699 * 109.46586 * 187.05944 * 3 2 1 6 6 H 1.07997 * 120.00375 * 274.05766 * 5 3 2 7 7 C 1.37887 * 119.99994 * 94.06284 * 5 3 2 8 8 N 1.31505 * 120.00288 * 183.25593 * 7 5 3 9 9 Si 1.86807 * 119.99688 * 3.25400 * 7 5 3 10 10 H 1.48502 * 109.46820 * 92.92886 * 9 7 5 11 11 H 1.48492 * 109.47087 * 212.92779 * 9 7 5 12 12 H 1.48502 * 109.47048 * 332.93103 * 9 7 5 13 13 N 1.46492 * 109.47086 * 67.06454 * 3 2 1 14 14 C 1.38542 * 119.99884 * 274.99224 * 13 3 2 15 15 N 1.32986 * 120.52397 * 353.77729 * 14 13 3 16 16 C 1.31869 * 120.67461 * 179.71425 * 15 14 13 17 17 Cl 1.73597 * 119.10263 * 180.26535 * 16 15 14 18 18 N 1.31927 * 121.79568 * 0.56597 * 16 15 14 19 19 C 1.32535 * 120.99596 * 359.72385 * 18 16 15 20 20 C 1.38114 * 119.21762 * 359.97438 * 19 18 16 21 21 N 1.48014 * 120.82011 * 179.97438 * 20 19 18 22 22 O 1.21794 * 120.00177 * 355.09561 * 21 20 19 23 23 O 1.21804 * 120.00225 * 175.09799 * 21 20 19 24 24 H 1.09004 * 109.46973 * 60.00396 * 1 2 3 25 25 H 1.08998 * 109.47395 * 300.00561 * 1 2 3 26 26 H 1.08998 * 109.47389 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46532 * 119.99907 * 2 1 3 28 28 H 1.08998 * 109.47395 * 239.99439 * 2 1 3 29 29 H 0.97002 * 120.00465 * 179.97438 * 8 7 5 30 30 H 0.97000 * 120.00380 * 94.99916 * 13 3 2 31 31 H 1.08001 * 120.39263 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5772 1.9914 -0.8201 5 6 3.5368 1.4460 -0.1746 6 1 4.1811 1.3429 0.6859 7 6 4.0838 1.5809 -1.4331 8 7 5.3876 1.5198 -1.5935 9 14 2.9726 1.8505 -2.9104 10 1 2.8233 3.3071 -3.1582 11 1 3.5722 1.2041 -4.1053 12 1 1.6391 1.2547 -2.6420 13 7 1.6953 2.0823 1.2720 14 6 0.4488 2.6634 1.4397 15 7 -0.3963 2.7561 0.4171 16 6 -1.5855 3.3036 0.5747 17 17 -2.6590 3.3973 -0.7864 18 7 -1.9796 3.7873 1.7371 19 6 -1.1903 3.7360 2.8006 20 6 0.0621 3.1657 2.6838 21 7 0.9726 3.0902 3.8483 22 8 0.6578 3.6128 4.9024 23 8 2.0368 2.5055 3.7524 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5139 0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 5.7724 1.6143 -2.4789 30 1 2.3397 2.0991 1.9967 31 1 -1.5226 4.1354 3.7474 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161048594.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:19 Heat of formation + Delta-G solvation = 47.212717 kcal Electronic energy + Delta-G solvation = -20871.219295 eV Core-core repulsion = 17410.645963 eV Total energy + Delta-G solvation = -3460.573332 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.062 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31317 -40.98117 -37.64820 -37.08665 -36.34168 -33.94137 -33.22261 -32.27945 -30.89786 -27.81868 -26.79490 -24.18436 -23.58327 -22.89486 -20.42502 -19.33069 -19.07902 -18.71084 -17.57608 -17.36799 -17.05005 -15.81146 -15.52969 -15.24660 -14.30188 -14.13889 -13.69086 -13.01254 -12.55419 -12.47608 -12.23233 -12.19324 -11.72565 -11.66581 -11.47949 -11.12992 -11.10378 -11.06117 -10.85828 -10.82192 -10.27524 -10.21051 -9.99822 -9.63307 -9.41297 -8.91331 -8.19144 -6.42679 -4.50085 -0.26326 0.97796 0.98614 1.21788 1.54469 3.01247 3.13909 3.19432 3.22426 3.28565 3.77382 4.06373 4.12784 4.28599 4.73661 4.97412 5.43152 5.68928 5.75481 5.86339 6.18382 6.30725 6.39307 6.41650 6.58485 6.58734 6.98045 7.10867 7.19886 7.40277 7.70829 7.97312 8.15287 8.59770 9.14617 10.68144 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.007780 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.720204 B = 3598.134136 C = 4978.352302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.222 3.778 4 H 0.068 0.932 5 C -0.540 4.540 6 H 0.085 0.915 7 C 0.087 3.913 8 N -0.876 5.876 9 Si 0.868 3.132 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.253 1.253 13 N -0.616 5.616 14 C 0.497 3.503 15 N -0.544 5.544 16 C 0.441 3.559 17 Cl 0.041 6.959 18 N -0.556 5.556 19 C 0.279 3.721 20 C -0.248 4.248 21 N 0.065 4.935 22 O -0.163 6.163 23 O -0.187 6.187 24 H 0.058 0.942 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.271 0.729 30 H 0.427 0.573 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.081 2.551 4.026 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.121 3.879 4 H 0.085 0.915 5 C -0.578 4.578 6 H 0.103 0.897 7 C -0.120 4.120 8 N -0.511 5.511 9 Si 0.694 3.306 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.177 1.177 13 N -0.245 5.245 14 C 0.243 3.757 15 N -0.273 5.273 16 C 0.145 3.855 17 Cl 0.069 6.931 18 N -0.282 5.282 19 C 0.111 3.889 20 C -0.348 4.348 21 N 0.575 4.425 22 O -0.377 6.377 23 O -0.388 6.388 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.277 0.723 31 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -14.646 2.421 2.265 15.016 hybrid contribution 0.461 0.116 0.181 0.509 sum -14.185 2.537 2.446 14.616 Atomic orbital electron populations 1.21907 0.97693 0.99708 1.01035 1.22098 0.93411 0.98603 1.02300 1.19746 0.97096 0.89860 0.81233 0.91466 1.20927 0.88024 1.53057 0.95788 0.89733 1.24922 0.95013 0.93286 0.98740 1.69860 1.10421 1.46856 1.23980 0.86958 0.81814 0.79457 0.82385 1.19799 1.20658 1.17691 1.47380 1.08726 1.47736 1.20681 1.18224 0.87886 0.84577 0.85020 1.67928 1.03964 1.24665 1.30737 1.23086 0.87033 0.86723 0.88670 1.98458 1.60344 1.95673 1.38629 1.68326 1.35681 1.25821 0.98363 1.22863 0.84719 0.83682 0.97595 1.22188 0.97977 1.26318 0.88321 1.42935 1.00430 0.97846 1.01312 1.94497 1.79956 1.47007 1.16283 1.94343 1.11298 1.43931 1.89263 0.92315 0.94873 0.94033 0.92433 0.90844 0.91863 0.72338 0.78679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.58 37.16 0.32 -2.18 16 2 C -0.13 -2.44 5.57 -26.73 -0.15 -2.59 16 3 C 0.22 4.79 1.81 -69.09 -0.13 4.67 16 4 H 0.07 1.51 4.58 -51.93 -0.24 1.28 16 5 C -0.54 -13.75 9.04 -34.44 -0.31 -14.06 16 6 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 8 N -0.88 -24.67 13.96 55.43 0.77 -23.90 16 9 Si 0.87 19.72 27.14 -169.99 -4.61 15.10 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.25 -5.44 6.54 56.52 0.37 -5.07 16 13 N -0.62 -12.07 5.03 -54.92 -0.28 -12.35 16 14 C 0.50 8.77 5.90 -154.78 -0.91 7.85 16 15 N -0.54 -9.36 7.13 -10.87 -0.08 -9.44 16 16 C 0.44 6.59 8.18 -91.98 -0.75 5.84 16 17 Cl 0.04 0.52 29.27 -51.86 -1.52 -1.00 16 18 N -0.56 -7.61 10.40 -11.72 -0.12 -7.73 16 19 C 0.28 3.55 10.81 -17.29 -0.19 3.36 16 20 C -0.25 -3.85 6.91 -79.48 -0.55 -4.40 16 21 N 0.07 1.07 4.45 34.19 0.15 1.22 16 22 O -0.16 -2.51 18.55 -29.46 -0.55 -3.06 16 23 O -0.19 -3.36 15.90 -29.46 -0.47 -3.83 16 24 H 0.06 1.02 7.92 -51.93 -0.41 0.61 16 25 H 0.03 0.56 5.69 -51.93 -0.30 0.27 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.43 8.41 5.27 -40.82 -0.22 8.19 16 31 H 0.20 1.76 7.70 -52.49 -0.40 1.36 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -26.91 286.77 -7.56 -34.47 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -2.42 Total: 5.51 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.77 Total: 0.68 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.45 Total: -52.19 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -1.01 Total: -6.89 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.61 Total: 15.10 kcal Atomic # 17 Polarization: 0.52 SS G_CDS: -1.52 Total: -1.00 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.91 -7.56 -34.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161048594.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.678 kcal (2) G-P(sol) polarization free energy of solvation -26.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds