Wall clock time and date at job start Tue Mar 31 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46899 * 109.47221 * 2 1 4 4 C 1.46896 * 111.00151 * 288.98270 * 3 2 1 5 5 C 1.50698 * 109.46684 * 164.34273 * 4 3 2 6 6 H 1.07998 * 120.00350 * 355.02112 * 5 4 3 7 7 C 1.37886 * 119.99889 * 175.01607 * 5 4 3 8 8 N 1.31517 * 119.99500 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47259 * 90.00076 * 9 7 5 11 11 H 1.48496 * 109.46954 * 210.00369 * 9 7 5 12 12 H 1.48503 * 109.47102 * 330.00432 * 9 7 5 13 13 C 1.40123 * 110.99526 * 165.02619 * 3 2 1 14 14 C 1.38405 * 120.50972 * 63.68309 * 13 3 2 15 15 N 1.32073 * 120.75933 * 179.67590 * 14 13 3 16 16 C 1.32032 * 121.94395 * 0.63669 * 15 14 13 17 17 Cl 1.73601 * 119.52821 * 179.67813 * 16 15 14 18 18 C 1.38170 * 120.94483 * 359.64917 * 16 15 14 19 19 C 1.39257 * 119.12926 * 0.02911 * 18 16 15 20 20 S 1.76198 * 120.88288 * 180.02562 * 19 18 16 21 21 C 1.81399 * 102.99808 * 359.97438 * 20 19 18 22 22 H 1.08995 * 109.47019 * 186.53601 * 1 2 3 23 23 H 1.09004 * 109.46606 * 306.53284 * 1 2 3 24 24 H 1.09002 * 109.46989 * 66.53236 * 1 2 3 25 25 H 1.09007 * 109.46690 * 240.00155 * 2 1 3 26 26 H 1.09002 * 109.47211 * 120.00828 * 2 1 3 27 27 H 1.09004 * 109.46727 * 284.33884 * 4 3 2 28 28 H 1.08990 * 109.47431 * 44.34260 * 4 3 2 29 29 H 0.97004 * 119.99349 * 179.97438 * 8 7 5 30 30 H 1.07999 * 119.61713 * 359.97438 * 14 13 3 31 31 H 1.08007 * 120.43222 * 180.02562 * 18 16 15 32 32 H 1.09009 * 109.47134 * 59.99757 * 21 20 19 33 33 H 1.09000 * 109.47001 * 179.97438 * 21 20 19 34 34 H 1.08993 * 109.47365 * 299.99467 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7747 2.0300 -1.2968 5 6 1.9252 3.5224 -1.1518 6 1 2.0979 3.9557 -0.1777 7 6 1.8423 4.3349 -2.2628 8 7 1.6315 3.8073 -3.4489 9 14 2.0296 6.1848 -2.0832 10 1 3.4607 6.5538 -2.2272 11 1 1.2341 6.8672 -3.1351 12 1 1.5427 6.6039 -0.7443 13 6 3.3786 1.4370 0.3380 14 6 4.3284 0.8448 -0.4761 15 7 5.6110 0.8963 -0.1655 16 6 6.0412 1.4969 0.9287 17 17 7.7412 1.5199 1.2801 18 6 5.1579 2.1079 1.7979 19 6 3.7961 2.0844 1.5080 20 16 2.6290 2.8495 2.5838 21 6 3.6727 3.5196 3.9076 22 1 -0.3633 -1.0209 0.1170 23 1 -0.3633 0.6118 0.8258 24 1 -0.3633 0.4093 -0.9427 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5140 0.8899 27 1 2.4946 1.6615 -2.0276 28 1 0.7643 1.7977 -1.6330 29 1 1.5729 4.3789 -4.2304 30 1 4.0174 0.3388 -1.3781 31 1 5.5190 2.5971 2.6906 32 1 4.3827 4.2310 3.4856 33 1 3.0467 4.0245 4.6433 34 1 4.2157 2.7064 4.3890 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591614.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:39 Heat of formation + Delta-G solvation = 18.260083 kcal Electronic energy + Delta-G solvation = -18513.281132 eV Core-core repulsion = 15597.745534 eV Total energy + Delta-G solvation = -2915.535598 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.060 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49643 -38.62294 -37.48323 -34.75067 -33.75748 -32.38049 -30.48546 -29.70414 -28.22486 -25.26655 -24.77556 -23.97601 -21.71232 -19.29711 -18.72679 -17.87975 -17.34913 -16.70739 -16.53041 -15.93140 -15.59632 -15.33637 -15.00825 -14.74562 -14.39981 -14.23057 -14.01275 -13.53711 -13.30475 -12.89823 -12.86995 -12.79948 -12.61866 -12.47233 -12.40695 -12.08224 -11.71481 -11.61079 -11.35632 -11.19745 -10.90742 -10.58738 -9.89035 -9.18535 -8.44226 -8.18062 -6.24561 -0.16168 -0.07071 0.46874 0.73834 1.38903 1.39604 1.50964 1.60808 2.40013 2.44538 2.96715 3.16364 3.41033 3.83263 3.95794 4.15309 4.30233 4.32533 4.33131 4.38025 4.41349 4.62240 4.65025 4.86378 4.91251 5.04815 5.18820 5.24918 5.32932 5.41771 5.70854 6.03818 6.31129 6.51478 6.63844 6.91301 7.43730 8.92427 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.006842 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.392621 B = 4091.566950 C = 4418.591953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.054 3.946 3 N -0.497 5.497 4 C 0.210 3.790 5 C -0.513 4.513 6 H 0.068 0.932 7 C 0.007 3.993 8 N -0.932 5.932 9 Si 0.951 3.049 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.260 1.260 13 C 0.086 3.914 14 C 0.093 3.907 15 N -0.499 5.499 16 C 0.170 3.830 17 Cl -0.023 7.023 18 C -0.163 4.163 19 C -0.032 4.032 20 S -0.057 6.057 21 C -0.164 4.164 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.039 0.961 25 H 0.031 0.969 26 H 0.078 0.922 27 H -0.024 1.024 28 H 0.023 0.977 29 H 0.262 0.738 30 H 0.155 0.845 31 H 0.174 0.826 32 H 0.089 0.911 33 H 0.131 0.869 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 -4.394 14.788 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.072 4.072 3 N -0.220 5.220 4 C 0.086 3.914 5 C -0.552 4.552 6 H 0.086 0.914 7 C -0.191 4.191 8 N -0.573 5.573 9 Si 0.777 3.223 10 H -0.208 1.208 11 H -0.208 1.208 12 H -0.184 1.184 13 C -0.016 4.016 14 C -0.066 4.066 15 N -0.212 5.212 16 C 0.003 3.997 17 Cl 0.006 6.994 18 C -0.191 4.191 19 C -0.154 4.154 20 S 0.187 5.813 21 C -0.333 4.333 22 H 0.102 0.898 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.049 0.951 26 H 0.097 0.903 27 H -0.007 1.007 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.172 0.828 31 H 0.191 0.809 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.298 -4.338 14.461 15.698 hybrid contribution 1.462 0.730 -0.814 1.825 sum 5.760 -3.608 13.648 15.246 Atomic orbital electron populations 1.21685 0.93496 1.02305 1.01731 1.22181 0.97412 0.87184 1.00450 1.59893 1.10965 1.17146 1.33953 1.19592 0.95225 0.93741 0.82865 1.21508 1.47542 0.92115 0.94004 0.91401 1.25730 0.95347 1.03124 0.94941 1.70059 1.51265 1.36840 0.99142 0.85640 0.77850 0.80429 0.78405 1.20755 1.20787 1.18420 1.19461 0.91364 0.97082 0.93711 1.23020 0.87014 0.97654 0.98923 1.66894 1.17783 1.18883 1.17661 1.21575 0.87726 0.97818 0.92564 1.98369 1.10741 1.97072 1.93229 1.21895 0.90535 1.03969 1.02732 1.22455 0.96632 0.98283 0.98034 1.86261 1.10652 1.64843 1.19585 1.24011 1.04402 1.05146 0.99698 0.89843 0.92196 0.94211 0.95117 0.90315 1.00654 0.95863 0.92944 0.82785 0.80878 0.89225 0.85099 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.84 71.98 0.71 -3.39 16 2 C 0.05 1.81 5.28 86.31 0.46 2.26 16 3 N -0.50 -20.32 3.83 -698.45 -2.67 -22.99 16 4 C 0.21 10.59 4.49 85.56 0.38 10.97 16 5 C -0.51 -28.24 8.83 25.60 0.23 -28.02 16 6 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 7 C 0.01 0.37 5.46 84.66 0.46 0.83 16 8 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 9 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 13 C 0.09 3.39 4.16 38.30 0.16 3.55 16 14 C 0.09 3.66 9.77 84.70 0.83 4.49 16 15 N -0.50 -18.85 10.33 -186.50 -1.93 -20.78 16 16 C 0.17 5.55 7.27 84.65 0.62 6.16 16 17 Cl -0.02 -0.60 29.10 -2.72 -0.08 -0.68 16 18 C -0.16 -4.84 9.19 22.50 0.21 -4.63 16 19 C -0.03 -1.09 6.17 22.96 0.14 -0.95 16 20 S -0.06 -1.71 22.09 -56.49 -1.25 -2.96 16 21 C -0.16 -2.92 9.19 113.37 1.04 -1.87 16 22 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.04 1.36 6.74 -2.39 -0.02 1.35 16 25 H 0.03 1.03 7.82 -2.38 -0.02 1.01 16 26 H 0.08 2.35 7.99 -2.39 -0.02 2.33 16 27 H -0.02 -1.34 6.83 -2.38 -0.02 -1.35 16 28 H 0.02 1.25 6.35 -2.39 -0.02 1.23 16 29 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.15 6.04 7.25 -2.91 -0.02 6.02 16 31 H 0.17 3.82 6.07 -2.91 -0.02 3.80 16 32 H 0.09 1.53 7.80 -2.39 -0.02 1.51 16 33 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 1.42 7.80 -2.39 -0.02 1.40 16 Total: -1.00 -64.24 314.33 2.72 -61.52 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 1.11 Total: 5.07 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 5.23 Total: -10.61 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -4.31 Total: -98.86 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -1.25 Total: -2.96 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -64.24 2.72 -61.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591614.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.781 kcal (2) G-P(sol) polarization free energy of solvation -64.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds