Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00199 * 2 1 4 4 H 1.48504 * 109.46901 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47365 * 119.99752 * 3 2 1 6 6 H 1.48501 * 109.47320 * 240.00271 * 3 2 1 7 7 C 1.37875 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00352 * 186.04983 * 7 2 1 9 9 C 1.50703 * 119.99822 * 6.05310 * 7 2 1 10 10 H 1.08998 * 109.47269 * 25.08867 * 9 7 2 11 11 O 1.42903 * 109.46933 * 145.08628 * 9 7 2 12 12 C 1.42904 * 114.00041 * 269.99902 * 11 9 7 13 13 C 1.52997 * 109.47086 * 180.02562 * 12 11 9 14 14 P 1.82301 * 109.47224 * 180.02562 * 13 12 11 15 15 O 1.48004 * 109.46812 * 304.99947 * 14 13 12 16 16 O 1.60996 * 109.47215 * 64.99739 * 14 13 12 17 17 O 1.60997 * 109.47243 * 184.99940 * 14 13 12 18 18 C 1.50697 * 109.47277 * 265.08383 * 9 7 2 19 19 C 1.38237 * 120.00117 * 276.27390 * 18 9 7 20 20 C 1.38233 * 119.99648 * 179.78320 * 19 18 9 21 21 C 1.38231 * 120.00431 * 0.44802 * 20 19 18 22 22 C 1.38240 * 119.99810 * 359.80813 * 21 20 19 23 23 C 1.38231 * 119.99932 * 359.97438 * 22 21 20 24 24 H 0.96998 * 119.99890 * 175.51688 * 1 2 3 25 25 H 1.09002 * 109.47108 * 299.99956 * 12 11 9 26 26 H 1.08997 * 109.47268 * 60.00047 * 12 11 9 27 27 H 1.09002 * 109.46893 * 299.99821 * 13 12 11 28 28 H 1.08997 * 109.47246 * 59.99766 * 13 12 11 29 29 H 0.96701 * 114.00387 * 60.00018 * 16 14 13 30 30 H 0.96697 * 114.00228 * 180.02562 * 17 14 13 31 31 H 1.07991 * 120.00042 * 359.97438 * 19 18 9 32 32 H 1.08003 * 119.99696 * 180.27535 * 20 19 18 33 33 H 1.07997 * 120.00625 * 179.83176 * 21 20 19 34 34 H 1.08001 * 120.00066 * 180.02562 * 22 21 20 35 35 H 1.07998 * 120.00041 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0800 -1.1967 0.0991 9 6 1.2573 -2.4956 -0.1365 10 1 0.3132 -2.3199 -0.6521 11 8 2.0456 -3.4206 -0.8882 12 6 1.8188 -3.3662 -2.2980 13 6 2.7104 -4.3937 -2.9980 14 15 2.4216 -4.3239 -4.7967 15 8 0.9793 -4.5090 -5.0722 16 8 2.8965 -2.8929 -5.3613 17 8 3.2605 -5.4918 -5.5207 18 6 0.9841 -3.0645 1.2319 19 6 1.9523 -3.8122 1.8756 20 6 1.7033 -4.3302 3.1327 21 6 0.4826 -4.1084 3.7424 22 6 -0.4876 -3.3652 3.0965 23 6 -0.2369 -2.8433 1.8412 24 1 -0.4850 -0.8375 -0.0657 25 1 0.7728 -3.5912 -2.5067 26 1 2.0561 -2.3681 -2.6660 27 1 3.7564 -4.1691 -2.7894 28 1 2.4727 -5.3918 -2.6300 29 1 3.8335 -2.7037 -5.2153 30 1 3.1546 -5.5144 -6.4816 31 1 2.9044 -3.9890 1.3976 32 1 2.4614 -4.9106 3.6375 33 1 0.2870 -4.5154 4.7234 34 1 -1.4412 -3.1915 3.5729 35 1 -0.9948 -2.2623 1.3368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224602943.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = -265.289174 kcal Electronic energy + Delta-G solvation = -20217.009862 eV Core-core repulsion = 16869.418708 eV Total energy + Delta-G solvation = -3347.591155 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39561 -38.66850 -37.53533 -36.73440 -35.45818 -34.13479 -32.91995 -31.79355 -31.41352 -28.18340 -25.27122 -24.27117 -23.26690 -22.22199 -20.16374 -19.53128 -19.37300 -17.99791 -17.62686 -16.87120 -16.43214 -16.30240 -15.87577 -15.73562 -15.48824 -15.17751 -15.07154 -14.96934 -14.24481 -13.99961 -13.70690 -13.58641 -13.41204 -13.31699 -13.11947 -12.83377 -12.71784 -12.31423 -12.03310 -12.00183 -11.69514 -11.62597 -11.50925 -11.21030 -10.74726 -10.39945 -9.82876 -9.51970 -8.77938 -6.56887 0.48881 0.51360 0.60071 1.45170 1.52602 1.73522 2.43538 2.68200 2.94309 3.05638 3.37867 3.51311 3.71532 3.99170 4.11406 4.14159 4.19321 4.28069 4.30794 4.36576 4.49042 4.66333 4.72158 4.79928 5.11913 5.16152 5.56097 5.58822 5.62592 5.67125 5.78077 5.82767 6.08029 6.14168 6.34059 6.42809 6.84963 7.25322 8.55179 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.005470 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.155215 B = 5118.053670 C = 6536.870361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.018 4.018 3 Si 1.115 2.885 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.621 4.621 8 H 0.048 0.952 9 C 0.226 3.774 10 H 0.006 0.994 11 O -0.406 6.406 12 C 0.077 3.923 13 C -0.745 4.745 14 P 2.428 2.572 15 O -1.073 7.073 16 O -0.854 6.854 17 O -0.864 6.864 18 C -0.071 4.071 19 C -0.127 4.127 20 C -0.121 4.121 21 C -0.134 4.134 22 C -0.120 4.120 23 C -0.143 4.143 24 H 0.260 0.740 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.446 0.554 30 H 0.457 0.543 31 H 0.104 0.896 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.213 -8.488 -7.088 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.219 4.219 3 Si 0.935 3.065 4 H -0.202 1.202 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.658 4.658 8 H 0.066 0.934 9 C 0.170 3.830 10 H 0.024 0.976 11 O -0.326 6.326 12 C 0.000 4.000 13 C -0.772 4.772 14 P 2.643 2.357 15 O -1.170 7.170 16 O -0.777 6.777 17 O -0.790 6.790 18 C -0.071 4.071 19 C -0.146 4.146 20 C -0.139 4.139 21 C -0.152 4.152 22 C -0.138 4.138 23 C -0.161 4.161 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.134 0.866 28 H 0.126 0.874 29 H 0.305 0.695 30 H 0.319 0.681 31 H 0.122 0.878 32 H 0.167 0.833 33 H 0.176 0.824 34 H 0.162 0.838 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.862 -7.113 -5.720 12.722 hybrid contribution 0.554 -1.337 0.233 1.466 sum 9.416 -8.451 -5.487 13.791 Atomic orbital electron populations 1.70949 1.07606 1.30608 1.46017 1.27427 0.96527 1.06284 0.91655 0.82995 0.74363 0.71044 0.78147 1.20187 1.19920 1.18716 1.22391 0.95031 0.92198 1.56222 0.93390 1.18790 0.90271 0.87367 0.86609 0.97577 1.87689 1.66407 1.61352 1.17174 1.21846 0.97471 0.97334 0.83364 1.31983 1.07382 1.05734 1.32127 0.87973 0.52769 0.47227 0.47750 1.95128 1.43711 1.89536 1.88595 1.88092 1.39488 1.62018 1.88085 1.87669 1.83896 1.72097 1.35313 1.20378 0.94078 0.95035 0.97651 1.20911 0.98557 0.98928 0.96178 1.21426 0.98362 0.99990 0.94115 1.21412 0.93129 0.99620 1.01052 1.21355 1.00756 0.97847 0.93830 1.21003 0.96297 1.01255 0.97579 0.92885 0.94458 0.93176 0.86564 0.87409 0.69497 0.68077 0.87755 0.83330 0.82382 0.83780 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.61 13.63 21.45 0.29 -55.31 16 2 C -0.02 -1.06 5.45 84.65 0.46 -0.60 16 3 Si 1.11 49.89 29.91 68.60 2.05 51.95 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.62 -36.35 8.62 25.60 0.22 -36.13 16 8 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 9 C 0.23 12.65 2.19 29.10 0.06 12.71 16 10 H 0.01 0.39 5.99 -2.39 -0.01 0.38 16 11 O -0.41 -21.11 9.16 -148.98 -1.37 -22.48 16 12 C 0.08 3.41 5.73 71.98 0.41 3.82 16 13 C -0.75 -23.23 6.71 71.98 0.48 -22.75 16 14 P 2.43 52.03 6.46 -40.88 -0.26 51.76 16 15 O -1.07 -37.91 18.55 -11.84 -0.22 -38.13 16 16 O -0.85 -13.99 14.06 -18.19 -0.26 -14.24 16 17 O -0.86 -10.02 14.06 -18.20 -0.26 -10.28 16 18 C -0.07 -3.64 4.98 -19.87 -0.10 -3.74 16 19 C -0.13 -5.77 9.35 22.27 0.21 -5.56 16 20 C -0.12 -4.33 10.05 22.27 0.22 -4.11 16 21 C -0.13 -4.41 10.05 22.27 0.22 -4.18 16 22 C -0.12 -4.51 10.05 22.27 0.22 -4.29 16 23 C -0.14 -6.78 9.54 22.27 0.21 -6.57 16 24 H 0.26 16.00 5.21 -92.71 -0.48 15.52 16 25 H 0.04 1.76 8.09 -2.39 -0.02 1.74 16 26 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 29 H 0.45 1.77 9.11 -74.06 -0.67 1.10 16 30 H 0.46 0.75 9.11 -74.06 -0.67 0.08 16 31 H 0.10 4.79 7.67 -2.92 -0.02 4.77 16 32 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 33 H 0.16 3.72 8.06 -2.91 -0.02 3.69 16 34 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.10 4.90 6.86 -2.91 -0.02 4.88 16 Total: -1.00 -91.09 318.29 2.68 -88.41 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.06 Total: 19.71 kcal Atomic # 6 Polarization: -74.02 SS G_CDS: 2.63 Total: -71.39 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.29 Total: -55.31 kcal Atomic # 8 Polarization: -83.03 SS G_CDS: -2.10 Total: -85.13 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 2.05 Total: 51.95 kcal Atomic # 15 Polarization: 52.03 SS G_CDS: -0.26 Total: 51.76 kcal Total: -91.09 2.68 -88.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224602943.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.882 kcal (2) G-P(sol) polarization free energy of solvation -91.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds