Wall clock time and date at job start Tue Mar 31 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46950 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47438 * 299.99857 * 3 2 1 6 6 H 1.48500 * 109.46931 * 60.00305 * 3 2 1 7 7 C 1.37882 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.46964 * 60.00152 * 9 7 2 12 12 C 1.42899 * 114.00025 * 90.00040 * 11 9 7 13 13 C 1.53006 * 109.47075 * 179.97438 * 12 11 9 14 14 P 1.82301 * 109.46972 * 179.97438 * 13 12 11 15 15 O 1.47997 * 109.47227 * 305.00291 * 14 13 12 16 16 O 1.61006 * 109.46995 * 64.99933 * 14 13 12 17 17 O 1.61000 * 109.47160 * 185.00127 * 14 13 12 18 18 C 1.50703 * 109.47227 * 300.00125 * 9 7 2 19 19 C 1.38236 * 119.99787 * 84.72708 * 18 9 7 20 20 C 1.38241 * 119.99636 * 179.81278 * 19 18 9 21 21 C 1.38234 * 120.00115 * 0.39672 * 20 19 18 22 22 C 1.38240 * 119.99714 * 359.85290 * 21 20 19 23 23 C 1.38228 * 120.00011 * 265.00351 * 18 9 7 24 24 H 0.97002 * 120.00075 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47064 * 299.99806 * 12 11 9 26 26 H 1.09007 * 109.47276 * 60.00167 * 12 11 9 27 27 H 1.09000 * 109.47373 * 300.00053 * 13 12 11 28 28 H 1.08998 * 109.46522 * 60.00416 * 13 12 11 29 29 H 0.96706 * 113.99407 * 60.00409 * 16 14 13 30 30 H 0.96697 * 113.99562 * 180.02562 * 17 14 13 31 31 H 1.07996 * 120.00216 * 359.97438 * 19 18 9 32 32 H 1.08000 * 119.99857 * 180.22806 * 20 19 18 33 33 H 1.07998 * 120.00030 * 179.84064 * 21 20 19 34 34 H 1.08003 * 119.99655 * 179.97438 * 22 21 20 35 35 H 1.08004 * 120.00508 * 359.97379 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4291 -2.5746 -1.1670 12 6 1.0736 -3.1704 -2.2947 13 6 0.1055 -3.1992 -3.4791 14 15 0.9280 -3.9586 -4.9179 15 8 2.1883 -3.2372 -5.2033 16 8 1.2541 -5.5022 -4.5967 17 8 -0.0427 -3.8705 -6.1993 18 6 0.3851 -2.5793 1.2302 19 6 -0.8704 -2.0007 1.2308 20 6 -1.6662 -2.0776 2.3585 21 6 -1.2034 -2.7259 3.4883 22 6 0.0542 -3.3000 3.4894 23 6 0.8485 -3.2263 2.3604 24 1 -0.4850 0.8401 -0.0004 25 1 1.9552 -2.5867 -2.5596 26 1 1.3732 -4.1886 -2.0460 27 1 -0.7759 -3.7831 -3.2139 28 1 -0.1944 -2.1812 -3.7280 29 1 0.4725 -6.0366 -4.3999 30 1 0.3311 -4.2568 -7.0031 31 1 -1.2305 -1.4910 0.3495 32 1 -2.6486 -1.6288 2.3578 33 1 -1.8242 -2.7837 4.3702 34 1 0.4159 -3.8061 4.3722 35 1 1.8310 -3.6749 2.3614 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224602946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:01 Heat of formation + Delta-G solvation = -249.178013 kcal Electronic energy + Delta-G solvation = -20441.940258 eV Core-core repulsion = 17095.047735 eV Total energy + Delta-G solvation = -3346.892523 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06450 -38.29960 -37.48001 -36.68540 -35.02619 -34.03171 -32.70808 -31.53001 -31.08038 -28.66001 -24.98490 -24.00199 -22.97113 -21.94734 -20.10885 -19.46923 -18.86691 -17.60791 -17.33155 -16.80164 -16.50216 -16.26754 -15.91695 -15.51305 -15.39059 -15.00282 -14.83668 -14.51596 -13.99552 -13.62595 -13.56005 -13.47221 -13.32055 -13.16566 -12.97305 -12.84888 -12.65615 -12.54126 -12.06956 -11.92270 -11.55147 -11.44038 -11.20015 -11.11256 -10.79968 -10.07886 -9.49776 -9.25791 -8.01372 -6.44467 0.66839 0.74658 0.91526 1.30427 1.32983 1.43425 2.31625 2.90044 3.16726 3.26928 3.51908 3.72122 3.85405 4.20816 4.27026 4.31494 4.38135 4.45940 4.55435 4.68024 4.74237 4.87724 5.03965 5.13463 5.38661 5.53474 5.59423 5.67949 5.80548 5.94772 6.05935 6.17521 6.26242 6.42946 6.52831 6.88027 6.96420 7.33931 8.78342 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.005430 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.475078 B = 5155.096000 C = 6264.819000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.570 4.570 8 H 0.052 0.948 9 C 0.237 3.763 10 H 0.019 0.981 11 O -0.390 6.390 12 C 0.072 3.928 13 C -0.743 4.743 14 P 2.429 2.571 15 O -1.075 7.075 16 O -0.849 6.849 17 O -0.868 6.868 18 C -0.071 4.071 19 C -0.070 4.070 20 C -0.161 4.161 21 C -0.138 4.138 22 C -0.141 4.141 23 C -0.141 4.141 24 H 0.259 0.741 25 H 0.034 0.966 26 H 0.056 0.944 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.446 0.554 30 H 0.456 0.544 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.523 -12.678 -6.865 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.607 4.607 8 H 0.070 0.930 9 C 0.181 3.819 10 H 0.037 0.963 11 O -0.310 6.310 12 C -0.005 4.005 13 C -0.771 4.771 14 P 2.644 2.356 15 O -1.172 7.172 16 O -0.772 6.772 17 O -0.793 6.793 18 C -0.072 4.072 19 C -0.089 4.089 20 C -0.179 4.179 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.159 4.159 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.131 0.869 28 H 0.110 0.890 29 H 0.305 0.695 30 H 0.318 0.682 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.047 -11.682 -5.914 14.033 hybrid contribution -0.054 1.097 0.359 1.155 sum -5.100 -10.586 -5.555 12.997 Atomic orbital electron populations 1.70045 1.06578 1.26130 1.47078 1.25688 0.95741 1.02001 0.93088 0.85676 0.79326 0.79919 0.77777 1.19308 1.20506 1.20032 1.21728 0.92888 0.92464 1.53616 0.92973 1.18633 0.87438 0.94021 0.81784 0.96313 1.87990 1.40878 1.81785 1.20389 1.21834 0.94459 0.96797 0.87448 1.31951 1.12193 1.13812 1.19097 0.87945 0.49764 0.49143 0.48773 1.95128 1.55117 1.78227 1.88680 1.88093 1.49703 1.46260 1.93143 1.87692 1.67581 1.86466 1.37582 1.20077 0.94746 0.96357 0.96009 1.21645 0.93724 0.93804 0.99747 1.21388 1.00169 1.01848 0.94488 1.21273 0.96741 0.99322 0.98240 1.21168 0.94878 1.01936 0.97941 1.21055 0.99997 1.01127 0.93764 0.93077 0.94774 0.92613 0.86938 0.89050 0.69480 0.68232 0.85024 0.86207 0.84076 0.83870 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.86 8.50 21.45 0.18 -49.68 16 2 C 0.04 2.21 5.24 84.66 0.44 2.65 16 3 Si 0.95 45.75 29.54 68.60 2.03 47.78 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.57 -33.31 8.89 25.60 0.23 -33.08 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.24 12.81 2.59 29.10 0.08 12.89 16 10 H 0.02 0.97 7.70 -2.39 -0.02 0.95 16 11 O -0.39 -20.90 8.53 -148.98 -1.27 -22.18 16 12 C 0.07 3.17 5.73 71.98 0.41 3.58 16 13 C -0.74 -24.97 6.71 71.98 0.48 -24.49 16 14 P 2.43 53.60 6.46 -40.88 -0.26 53.34 16 15 O -1.07 -39.28 18.54 -11.84 -0.22 -39.50 16 16 O -0.85 -12.00 14.06 -18.20 -0.26 -12.26 16 17 O -0.87 -11.54 14.06 -18.20 -0.26 -11.80 16 18 C -0.07 -3.62 4.80 -19.87 -0.10 -3.71 16 19 C -0.07 -3.53 7.46 22.27 0.17 -3.36 16 20 C -0.16 -6.74 10.05 22.27 0.22 -6.52 16 21 C -0.14 -4.98 10.05 22.27 0.22 -4.76 16 22 C -0.14 -5.16 10.05 22.27 0.22 -4.94 16 23 C -0.14 -6.12 9.68 22.27 0.22 -5.90 16 24 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 25 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.06 2.09 8.09 -2.38 -0.02 2.07 16 27 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 28 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 29 H 0.45 0.63 9.11 -74.05 -0.67 -0.04 16 30 H 0.46 1.31 9.11 -74.06 -0.67 0.64 16 31 H 0.13 7.41 5.50 -2.91 -0.02 7.40 16 32 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 33 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 34 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 35 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -88.14 314.54 2.31 -85.82 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -0.23 Total: 16.12 kcal Atomic # 6 Polarization: -70.24 SS G_CDS: 2.60 Total: -67.64 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: 0.18 Total: -49.68 kcal Atomic # 8 Polarization: -83.73 SS G_CDS: -2.00 Total: -85.74 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 15 Polarization: 53.60 SS G_CDS: -0.26 Total: 53.34 kcal Total: -88.14 2.31 -85.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224602946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.354 kcal (2) G-P(sol) polarization free energy of solvation -88.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds