Wall clock time and date at job start Tue Mar 31 2020 05:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21295 * 119.99864 * 2 1 4 4 C 1.46778 * 119.99932 * 179.97438 * 2 1 3 5 5 C 1.40036 * 120.21476 * 0.27569 * 4 2 1 6 6 C 1.37869 * 119.85397 * 180.29844 * 5 4 2 7 7 F 1.35110 * 119.85315 * 179.70180 * 6 5 4 8 8 C 1.38802 * 120.28923 * 359.68214 * 6 5 4 9 9 C 1.38051 * 120.43315 * 0.02562 * 8 6 5 10 10 C 1.38676 * 120.13515 * 0.02562 * 9 8 6 11 11 O 1.35638 * 120.14229 * 179.97438 * 10 9 8 12 12 C 1.42898 * 117.00238 * 5.59999 * 11 10 9 13 13 H 1.08995 * 109.47173 * 20.95485 * 12 11 10 14 14 C 1.50700 * 109.47443 * 140.95040 * 12 11 10 15 15 H 1.08006 * 119.99538 * 5.48091 * 14 12 11 16 16 C 1.37875 * 120.00305 * 185.47700 * 14 12 11 17 17 N 1.31513 * 120.00122 * 186.12484 * 16 14 12 18 18 Si 1.86798 * 120.00037 * 6.12431 * 16 14 12 19 19 H 1.48507 * 109.46894 * 270.00160 * 18 16 14 20 20 H 1.48499 * 109.47240 * 29.99622 * 18 16 14 21 21 H 1.48500 * 109.47115 * 150.00034 * 18 16 14 22 22 C 1.52997 * 109.47438 * 260.95199 * 12 11 10 23 23 Cl 1.80297 * 109.47102 * 64.64872 * 22 12 11 24 24 H 1.08998 * 109.47507 * 240.00374 * 1 2 3 25 25 H 1.08994 * 109.47108 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46967 * 120.00122 * 1 2 3 27 27 H 1.08000 * 120.07249 * 359.97438 * 5 4 2 28 28 H 1.08000 * 119.78922 * 180.02562 * 8 6 5 29 29 H 1.07996 * 119.93419 * 180.02562 * 9 8 6 30 30 H 0.97010 * 120.00068 * 354.97291 * 17 16 14 31 31 H 1.08994 * 109.47501 * 184.64981 * 22 12 11 32 32 H 1.09006 * 109.46986 * 304.65080 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2711 0.0006 5 6 1.5453 -2.4865 -0.0047 6 6 2.2421 -3.6761 0.0021 7 9 1.5709 -4.8487 0.0031 8 6 3.6301 -3.6744 0.0075 9 6 4.3279 -2.4833 0.0067 10 6 3.6450 -1.2763 0.0009 11 8 4.3305 -0.1059 0.0006 12 6 5.7523 -0.1868 -0.1179 13 1 6.0265 -1.1472 -0.5542 14 6 6.2467 0.9271 -1.0044 15 1 5.5582 1.6783 -1.3624 16 6 7.5779 0.9873 -1.3584 17 7 8.0335 2.0218 -2.0304 18 14 8.7343 -0.4007 -0.8834 19 1 9.3312 -0.1146 0.4460 20 1 7.9771 -1.6767 -0.8217 21 1 9.8139 -0.5142 -1.8967 22 6 6.3878 -0.0560 1.2677 23 17 5.9044 -1.4633 2.2859 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 0.4653 -2.4919 -0.0088 28 1 4.1678 -4.6111 0.0124 29 1 5.4078 -2.4914 0.0105 30 1 7.4206 2.7070 -2.3404 31 1 7.4731 -0.0347 1.1691 32 1 6.0475 0.8666 1.7380 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225833219.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:57 Heat of formation + Delta-G solvation = -123.146866 kcal Electronic energy + Delta-G solvation = -20566.286531 eV Core-core repulsion = 17046.113140 eV Total energy + Delta-G solvation = -3520.173391 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.056 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.79218 -41.55463 -39.80930 -38.32652 -36.88548 -35.44201 -33.22326 -32.41653 -30.46372 -30.00967 -26.88884 -25.32046 -24.20920 -22.20351 -21.24360 -19.92970 -19.20375 -18.19763 -17.76163 -16.88888 -16.48398 -16.31732 -16.17195 -15.86614 -15.72554 -15.60806 -15.30764 -14.87464 -14.61559 -14.48495 -13.86357 -13.56197 -13.52666 -13.07343 -12.94066 -12.91018 -12.60187 -12.37573 -12.25809 -11.82903 -11.55677 -11.25915 -11.00472 -10.84591 -10.61229 -10.21039 -9.17584 -8.93210 -6.71746 -0.43063 0.20178 1.17759 1.33608 1.40879 1.41738 1.55869 2.27476 2.30504 2.59495 2.83254 3.02496 3.30659 3.63967 3.79338 3.88168 3.99338 4.02597 4.22302 4.25625 4.43111 4.60125 4.70111 4.70828 4.76304 4.88631 5.03603 5.09520 5.27781 5.39716 5.66734 5.78403 6.17041 6.59266 6.70018 7.11040 8.38065 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.006658 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.967456 B = 4204.180007 C = 4908.424829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.382 3.618 3 O -0.494 6.494 4 C -0.215 4.215 5 C -0.051 4.051 6 C 0.034 3.966 7 F -0.138 7.138 8 C -0.072 4.072 9 C -0.200 4.200 10 C 0.163 3.837 11 O -0.293 6.293 12 C 0.180 3.820 13 H 0.060 0.940 14 C -0.610 4.610 15 H 0.024 0.976 16 C -0.005 4.005 17 N -0.916 5.916 18 Si 1.064 2.936 19 H -0.245 1.245 20 H -0.239 1.239 21 H -0.273 1.273 22 C -0.045 4.045 23 Cl -0.196 7.196 24 H 0.122 0.878 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.187 0.813 28 H 0.165 0.835 29 H 0.143 0.857 30 H 0.258 0.742 31 H 0.102 0.898 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 -13.759 6.039 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.262 3.738 3 O -0.372 6.372 4 C -0.216 4.216 5 C -0.070 4.070 6 C 0.015 3.985 7 F -0.116 7.116 8 C -0.090 4.090 9 C -0.218 4.218 10 C 0.114 3.886 11 O -0.204 6.204 12 C 0.124 3.876 13 H 0.077 0.923 14 C -0.647 4.647 15 H 0.043 0.957 16 C -0.206 4.206 17 N -0.549 5.549 18 Si 0.882 3.118 19 H -0.170 1.170 20 H -0.162 1.162 21 H -0.198 1.198 22 C -0.108 4.108 23 Cl -0.169 7.169 24 H 0.140 0.860 25 H 0.100 0.900 26 H 0.138 0.862 27 H 0.204 0.796 28 H 0.183 0.817 29 H 0.160 0.840 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.919 -13.574 6.075 17.876 hybrid contribution -1.249 1.014 -0.230 1.625 sum -11.168 -12.560 5.845 17.795 Atomic orbital electron populations 1.22260 0.89278 1.05863 1.06862 1.23023 0.93766 0.86460 0.70524 1.90658 1.73488 1.35423 1.37591 1.20035 0.90279 0.96715 1.14615 1.21401 1.02214 0.88001 0.95377 1.17335 0.90001 0.81548 1.09665 1.91500 1.80186 1.45273 1.94672 1.21356 0.92708 0.99254 0.95729 1.21379 1.01656 0.91237 1.07563 1.19968 0.92142 0.86241 0.90259 1.86338 1.21661 1.27758 1.84622 1.20861 0.76007 0.99064 0.91682 0.92252 1.22063 0.96794 1.12577 1.33274 0.95748 1.27303 0.98162 1.01608 0.93516 1.70909 1.37841 1.09904 1.36243 0.83877 0.75488 0.73835 0.78641 1.16998 1.16235 1.19806 1.25758 1.02345 0.89964 0.92721 1.98658 1.93784 1.50644 1.73841 0.85985 0.90010 0.86230 0.79559 0.81719 0.83984 0.93220 0.87955 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.35 8.93 71.24 0.64 -2.72 16 2 C 0.38 12.32 7.21 27.92 0.20 12.52 16 3 O -0.49 -22.04 15.89 17.89 0.28 -21.75 16 4 C -0.21 -6.79 5.88 -20.08 -0.12 -6.91 16 5 C -0.05 -1.16 9.44 22.62 0.21 -0.95 16 6 C 0.03 0.80 7.28 22.32 0.16 0.96 16 7 F -0.14 -3.02 17.26 44.97 0.78 -2.24 16 8 C -0.07 -1.83 10.01 22.36 0.22 -1.60 16 9 C -0.20 -6.53 7.25 22.33 0.16 -6.37 16 10 C 0.16 6.25 6.23 22.90 0.14 6.39 16 11 O -0.29 -13.92 7.75 -68.55 -0.53 -14.45 16 12 C 0.18 8.45 1.72 29.85 0.05 8.50 16 13 H 0.06 2.64 3.91 -2.39 -0.01 2.63 16 14 C -0.61 -34.73 9.24 25.60 0.24 -34.50 16 15 H 0.02 1.60 8.05 -2.91 -0.02 1.58 16 16 C -0.01 -0.29 5.43 84.65 0.46 0.17 16 17 N -0.92 -55.20 13.70 21.45 0.29 -54.91 16 18 Si 1.06 44.69 25.37 68.60 1.74 46.43 16 19 H -0.25 -9.21 6.76 99.48 0.67 -8.54 16 20 H -0.24 -8.68 6.36 99.48 0.63 -8.05 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 C -0.05 -1.85 5.94 71.98 0.43 -1.43 16 23 Cl -0.20 -6.76 25.80 -2.72 -0.07 -6.83 16 24 H 0.12 1.44 8.09 -2.39 -0.02 1.42 16 25 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 26 H 0.12 1.47 8.08 -2.38 -0.02 1.45 16 27 H 0.19 2.49 7.05 -2.91 -0.02 2.47 16 28 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.14 4.78 4.88 -2.91 -0.01 4.77 16 30 H 0.26 16.04 8.72 -92.70 -0.81 15.23 16 31 H 0.10 4.04 4.45 -2.39 -0.01 4.03 16 32 H 0.09 3.88 8.14 -2.38 -0.02 3.86 16 Total: -1.00 -71.18 288.09 6.32 -64.86 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.02 Total: 14.82 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 2.80 Total: -25.93 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.29 Total: -54.91 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.25 Total: -36.20 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.74 Total: 46.43 kcal Atomic # 17 Polarization: -6.76 SS G_CDS: -0.07 Total: -6.83 kcal Total: -71.18 6.32 -64.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225833219.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.288 kcal (2) G-P(sol) polarization free energy of solvation -71.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds