Wall clock time and date at job start Tue Mar 31 2020 05:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21294 * 120.00505 * 2 1 4 4 C 1.46862 * 119.99843 * 179.97438 * 2 1 3 5 5 C 1.40027 * 120.10755 * 185.92658 * 4 2 1 6 6 C 1.37623 * 119.92291 * 179.97438 * 5 4 2 7 7 C 1.39003 * 120.14461 * 359.97438 * 6 5 4 8 8 O 1.35713 * 119.89351 * 180.02562 * 7 6 5 9 9 C 1.42899 * 117.00017 * 4.96863 * 8 7 6 10 10 H 1.08999 * 109.47159 * 21.82195 * 9 8 7 11 11 C 1.50696 * 109.47052 * 141.82024 * 9 8 7 12 12 H 1.07999 * 120.00341 * 5.21023 * 11 9 8 13 13 C 1.37881 * 120.00148 * 185.21332 * 11 9 8 14 14 N 1.31515 * 120.00384 * 185.70451 * 13 11 9 15 15 Si 1.86803 * 119.99533 * 5.70342 * 13 11 9 16 16 H 1.48505 * 109.47106 * 269.99740 * 15 13 11 17 17 H 1.48494 * 109.47672 * 30.00108 * 15 13 11 18 18 H 1.48505 * 109.47069 * 150.00531 * 15 13 11 19 19 C 1.52998 * 109.47363 * 261.82013 * 9 8 7 20 20 Cl 1.80300 * 109.46953 * 64.56221 * 19 9 8 21 21 C 1.39254 * 120.21796 * 0.28061 * 7 6 5 22 22 F 1.35103 * 119.96552 * 179.70398 * 21 7 6 23 23 C 1.37788 * 120.07241 * 359.44601 * 21 7 6 24 24 H 1.08994 * 109.47478 * 185.42553 * 1 2 3 25 25 H 1.09004 * 109.47115 * 305.42986 * 1 2 3 26 26 H 1.09003 * 109.46803 * 65.42756 * 1 2 3 27 27 H 1.07999 * 120.03683 * 359.94695 * 5 4 2 28 28 H 1.07998 * 119.92575 * 179.97438 * 6 5 4 29 29 H 0.96994 * 119.99574 * 354.98269 * 14 13 11 30 30 H 1.09001 * 109.46961 * 184.55874 * 19 9 8 31 31 H 1.08993 * 109.47090 * 304.56501 * 19 9 8 32 32 H 1.08002 * 120.07308 * 180.25355 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 6 2.2413 -1.2719 0.0006 5 6 3.6359 -1.2777 0.1256 6 6 4.3201 -2.4718 0.1263 7 6 3.6297 -3.6720 0.0035 8 8 4.3095 -4.8466 0.0052 9 6 5.7166 -4.7815 0.2459 10 1 5.9542 -3.8517 0.7627 11 6 6.1350 -5.9513 1.0988 12 1 5.4177 -6.7172 1.3544 13 6 7.4336 -6.0439 1.5528 14 7 7.8285 -7.1177 2.2014 15 14 8.6320 -4.6441 1.2467 16 1 9.3308 -4.8642 -0.0450 17 1 7.8897 -3.3590 1.1952 18 1 9.6287 -4.5962 2.3466 19 6 6.4649 -4.8292 -1.0878 20 17 6.0664 -3.3596 -2.0534 21 6 2.2433 -3.6729 -0.1265 22 9 1.5779 -4.8420 -0.2515 23 6 1.5487 -2.4829 -0.1226 24 1 -0.3634 -1.0230 0.0972 25 1 -0.3633 0.5958 0.8374 26 1 -0.3633 0.4274 -0.9346 27 1 4.1740 -0.3462 0.2211 28 1 5.3958 -2.4764 0.2223 29 1 7.1891 -7.8122 2.4241 30 1 7.5383 -4.8612 -0.9011 31 1 6.1655 -5.7194 -1.6407 32 1 0.4730 -2.4837 -0.2194 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225873716.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:49 Heat of formation + Delta-G solvation = -122.855226 kcal Electronic energy + Delta-G solvation = -20250.233559 eV Core-core repulsion = 16730.072815 eV Total energy + Delta-G solvation = -3520.160744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.056 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.86143 -41.40922 -40.34956 -38.26910 -36.91144 -35.49626 -32.87240 -32.52451 -31.16450 -29.78625 -26.91081 -25.32618 -24.03503 -22.64878 -20.97771 -20.06557 -19.44097 -18.08597 -17.83380 -17.15205 -16.80504 -16.46218 -16.00438 -15.88678 -15.85914 -15.59927 -15.36914 -14.93427 -14.61015 -14.52581 -13.83930 -13.54750 -13.53909 -13.12374 -13.02657 -12.83827 -12.63307 -12.49281 -12.25601 -11.85656 -11.59258 -11.28357 -11.02877 -10.87055 -10.77445 -10.03064 -9.31156 -8.98785 -6.73768 -0.45011 0.05671 1.18096 1.31294 1.34347 1.42278 1.55438 2.11924 2.27607 2.55242 2.82284 2.97990 3.20481 3.57179 3.77676 3.87921 3.97620 4.00784 4.10727 4.25914 4.37829 4.61423 4.70793 4.72822 4.76651 4.91933 5.00769 5.11084 5.28868 5.32082 5.50998 5.77253 6.11760 6.48059 6.52831 7.08191 8.38238 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.021202 B = 0.005431 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.329685 B = 5154.610825 C = 5520.105603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.408 3.592 3 O -0.501 6.501 4 C -0.203 4.203 5 C -0.029 4.029 6 C -0.197 4.197 7 C 0.127 3.873 8 O -0.311 6.311 9 C 0.184 3.816 10 H 0.060 0.940 11 C -0.612 4.612 12 H 0.032 0.968 13 C -0.001 4.001 14 N -0.915 5.915 15 Si 1.060 2.940 16 H -0.244 1.244 17 H -0.242 1.242 18 H -0.274 1.274 19 C -0.048 4.048 20 Cl -0.197 7.197 21 C 0.024 3.976 22 F -0.142 7.142 23 C -0.048 4.048 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.112 0.888 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.261 0.739 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.218 12.785 -5.919 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.290 3.710 3 O -0.380 6.380 4 C -0.204 4.204 5 C -0.047 4.047 6 C -0.216 4.216 7 C 0.078 3.922 8 O -0.223 6.223 9 C 0.128 3.872 10 H 0.078 0.922 11 C -0.650 4.650 12 H 0.051 0.949 13 C -0.202 4.202 14 N -0.548 5.548 15 Si 0.878 3.122 16 H -0.169 1.169 17 H -0.166 1.166 18 H -0.200 1.200 19 C -0.111 4.111 20 Cl -0.171 7.171 21 C 0.004 3.996 22 F -0.121 7.121 23 C -0.066 4.066 24 H 0.123 0.877 25 H 0.125 0.875 26 H 0.130 0.870 27 H 0.164 0.836 28 H 0.161 0.839 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.462 13.590 -5.823 17.553 hybrid contribution -1.246 -1.651 0.027 2.069 sum -10.708 11.939 -5.796 17.052 Atomic orbital electron populations 1.22289 0.89998 1.06658 1.06276 1.22738 0.93373 0.85883 0.69017 1.90539 1.73231 1.35071 1.39194 1.20410 0.94056 0.95169 1.10756 1.21366 0.93719 0.97673 0.91973 1.21349 1.01615 0.91093 1.07514 1.19903 0.91409 0.87002 0.93862 1.86146 1.24067 1.27927 1.84176 1.20883 0.75177 0.99338 0.91792 0.92241 1.22061 0.98922 1.09043 1.34962 0.94918 1.27166 0.98810 1.01731 0.92503 1.70908 1.37381 1.07958 1.38541 0.83910 0.75459 0.73730 0.79073 1.16914 1.16556 1.19972 1.25799 1.02710 0.88600 0.93988 1.98672 1.95523 1.46427 1.76481 1.17147 0.86707 0.83044 1.12705 1.91470 1.79956 1.46486 1.94216 1.21535 1.02209 0.87797 0.95062 0.87743 0.87545 0.86975 0.83557 0.83943 0.92916 0.87923 0.88302 0.79157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 10.16 71.24 0.72 -1.42 16 2 C 0.41 8.61 7.20 27.94 0.20 8.81 16 3 O -0.50 -14.12 17.10 -3.07 -0.05 -14.17 16 4 C -0.20 -4.92 5.87 -20.15 -0.12 -5.04 16 5 C -0.03 -0.82 9.58 22.56 0.22 -0.61 16 6 C -0.20 -6.58 7.17 22.31 0.16 -6.42 16 7 C 0.13 4.73 6.21 22.70 0.14 4.88 16 8 O -0.31 -13.92 9.53 -90.34 -0.86 -14.78 16 9 C 0.18 8.23 1.73 29.85 0.05 8.28 16 10 H 0.06 2.57 3.94 -2.39 -0.01 2.56 16 11 C -0.61 -33.09 9.24 25.60 0.24 -32.85 16 12 H 0.03 2.00 8.04 -2.91 -0.02 1.98 16 13 C 0.00 -0.03 5.43 84.66 0.46 0.42 16 14 N -0.91 -53.30 13.70 21.45 0.29 -53.01 16 15 Si 1.06 43.64 25.33 68.60 1.74 45.37 16 16 H -0.24 -8.97 6.76 99.48 0.67 -8.30 16 17 H -0.24 -8.75 6.36 99.48 0.63 -8.11 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 19 C -0.05 -1.89 5.94 71.98 0.43 -1.46 16 20 Cl -0.20 -6.71 25.69 -2.72 -0.07 -6.78 16 21 C 0.02 0.77 7.30 22.41 0.16 0.93 16 22 F -0.14 -4.95 17.10 44.97 0.77 -4.19 16 23 C -0.05 -1.10 9.37 22.60 0.21 -0.89 16 24 H 0.10 0.70 5.70 -2.39 -0.01 0.69 16 25 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.15 3.84 7.65 -2.91 -0.02 3.82 16 28 H 0.14 4.89 4.85 -2.91 -0.01 4.88 16 29 H 0.26 15.54 8.72 -92.71 -0.81 14.73 16 30 H 0.10 3.89 4.37 -2.39 -0.01 3.88 16 31 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 32 H 0.19 2.59 6.03 -2.91 -0.02 2.57 16 Total: -1.00 -64.88 287.61 5.73 -59.15 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 1.04 Total: 13.76 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 2.87 Total: -25.36 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.29 Total: -53.01 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.91 Total: -28.95 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.77 Total: -4.19 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.74 Total: 45.37 kcal Atomic # 17 Polarization: -6.71 SS G_CDS: -0.07 Total: -6.78 kcal Total: -64.88 5.73 -59.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225873716.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.702 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds