Wall clock time and date at job start Tue Mar 31 2020 05:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21311 * 119.99968 * 2 1 4 4 C 1.46679 * 119.99879 * 179.97438 * 2 1 3 5 5 C 1.40115 * 120.13813 * 5.39066 * 4 2 1 6 6 C 1.36502 * 120.02887 * 179.74278 * 5 4 2 7 7 C 1.39177 * 120.31878 * 0.27227 * 6 5 4 8 8 O 1.35666 * 119.85506 * 179.97438 * 7 6 5 9 9 C 1.42900 * 116.99825 * 176.23005 * 8 7 6 10 10 H 1.08999 * 109.47012 * 26.87154 * 9 8 7 11 11 C 1.50702 * 109.47448 * 146.87139 * 9 8 7 12 12 H 1.08002 * 119.99685 * 359.97438 * 11 9 8 13 13 C 1.37870 * 120.00282 * 179.97438 * 11 9 8 14 14 N 1.31519 * 120.00185 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 120.00058 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47140 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46998 * 120.00095 * 15 13 11 18 18 H 1.48504 * 109.46822 * 239.99716 * 15 13 11 19 19 C 1.52999 * 109.47119 * 266.87036 * 9 8 7 20 20 Cl 1.80302 * 109.47019 * 64.99758 * 19 9 8 21 21 C 1.38905 * 120.28279 * 359.95991 * 7 6 5 22 22 C 1.38013 * 119.96381 * 0.02562 * 21 7 6 23 23 F 1.35104 * 120.16059 * 180.02562 * 22 21 7 24 24 H 1.09000 * 109.47493 * 174.93826 * 1 2 3 25 25 H 1.09004 * 109.46708 * 294.93738 * 1 2 3 26 26 H 1.08999 * 109.47082 * 54.93531 * 1 2 3 27 27 H 1.08000 * 119.98879 * 0.02562 * 5 4 2 28 28 H 1.08004 * 119.83431 * 180.25058 * 6 5 4 29 29 H 0.96997 * 119.99939 * 179.97438 * 14 13 11 30 30 H 1.09000 * 109.47470 * 185.00066 * 19 9 8 31 31 H 1.09001 * 109.46985 * 304.99982 * 19 9 8 32 32 H 1.07998 * 120.01956 * 179.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2404 -1.2703 0.0006 5 6 1.5473 -2.4828 -0.1127 6 6 2.2325 -3.6634 -0.1172 7 6 3.6196 -3.6711 -0.0040 8 8 4.2910 -4.8500 -0.0090 9 6 5.7180 -4.7839 0.0272 10 1 6.0267 -3.8600 0.5163 11 6 6.2563 -5.9632 0.7958 12 1 5.5765 -6.6902 1.2151 13 6 7.6164 -6.1140 0.9637 14 7 8.4442 -5.2290 0.4527 15 14 8.2834 -7.5754 1.9170 16 1 7.1540 -8.4179 2.3857 17 1 9.1685 -8.3789 1.0359 18 1 9.0581 -7.0909 3.0876 19 6 6.2663 -4.8128 -1.4009 20 17 5.7420 -3.3262 -2.2761 21 6 4.3195 -2.4771 0.1139 22 6 3.6385 -1.2766 0.1195 23 9 4.3152 -0.1129 0.2334 24 1 -0.3634 -1.0236 -0.0907 25 1 -0.3633 0.4333 0.9319 26 1 -0.3633 0.5904 -0.8411 27 1 0.4709 -2.4831 -0.2011 28 1 1.6954 -4.5959 -0.2088 29 1 9.4011 -5.3350 0.5711 30 1 7.3552 -4.8520 -1.3714 31 1 5.8850 -5.6928 -1.9187 32 1 5.3958 -2.4881 0.2020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225965591.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:51 Heat of formation + Delta-G solvation = -123.414314 kcal Electronic energy + Delta-G solvation = -20233.196978 eV Core-core repulsion = 16713.011990 eV Total energy + Delta-G solvation = -3520.184988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.056 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.03932 -41.28845 -40.21819 -38.18967 -36.66402 -35.41225 -32.69728 -32.05904 -30.96459 -29.67347 -27.33568 -25.16206 -23.98672 -22.65385 -20.94229 -19.64973 -18.89667 -17.78447 -17.53222 -17.22049 -16.94629 -16.64457 -16.12298 -15.74053 -15.66295 -15.39253 -15.31147 -14.74712 -14.49845 -13.96783 -13.83388 -13.43738 -13.13468 -13.01894 -12.96259 -12.94167 -12.74158 -12.41871 -12.36655 -12.01615 -11.56185 -11.27298 -11.06541 -10.75319 -10.62723 -9.93068 -9.20044 -8.41435 -6.58145 -0.38185 0.19710 1.37417 1.40821 1.43656 1.54315 1.56636 2.19337 2.51460 2.65087 2.94184 3.06036 3.17880 3.64764 3.92869 4.11222 4.17507 4.22807 4.31235 4.44309 4.69644 4.73030 4.81819 4.90388 5.01947 5.10456 5.12451 5.26646 5.34362 5.50526 5.68006 5.76065 6.36412 6.58504 6.65548 7.14655 8.65516 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.004750 C = 0.004583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.892309 B = 5893.388094 C = 6108.213133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.394 3.606 3 O -0.514 6.514 4 C -0.274 4.274 5 C 0.014 3.986 6 C -0.181 4.181 7 C 0.195 3.805 8 O -0.307 6.307 9 C 0.206 3.794 10 H 0.031 0.969 11 C -0.546 4.546 12 H 0.075 0.925 13 C 0.026 3.974 14 N -0.911 5.911 15 Si 0.980 3.020 16 H -0.263 1.263 17 H -0.272 1.272 18 H -0.278 1.278 19 C -0.028 4.028 20 Cl -0.225 7.225 21 C -0.265 4.265 22 C 0.166 3.834 23 F -0.140 7.140 24 H 0.116 0.884 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.203 0.797 28 H 0.169 0.831 29 H 0.276 0.724 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.608 1.745 -1.448 14.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.277 3.723 3 O -0.394 6.394 4 C -0.276 4.276 5 C -0.003 4.003 6 C -0.199 4.199 7 C 0.146 3.854 8 O -0.219 6.219 9 C 0.151 3.849 10 H 0.048 0.952 11 C -0.584 4.584 12 H 0.093 0.907 13 C -0.176 4.176 14 N -0.548 5.548 15 Si 0.803 3.197 16 H -0.187 1.187 17 H -0.197 1.197 18 H -0.204 1.204 19 C -0.091 4.091 20 Cl -0.200 7.200 21 C -0.284 4.284 22 C 0.146 3.854 23 F -0.119 7.119 24 H 0.135 0.865 25 H 0.127 0.873 26 H 0.122 0.878 27 H 0.219 0.781 28 H 0.187 0.813 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.103 0.897 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.169 2.267 -1.539 14.431 hybrid contribution 1.724 -0.075 0.330 1.757 sum -12.445 2.192 -1.209 12.694 Atomic orbital electron populations 1.22242 0.88779 1.07245 1.05998 1.22960 0.94090 0.85891 0.69345 1.90577 1.73554 1.35615 1.39647 1.20775 0.91090 0.98488 1.17278 1.21354 1.02060 0.87527 0.89404 1.20635 0.89491 1.01502 1.08297 1.19618 0.93219 0.84251 0.88268 1.86089 1.23151 1.27261 1.85364 1.20431 0.73363 0.99016 0.92042 0.95187 1.21265 0.92602 1.09470 1.35039 0.90727 1.25763 0.96324 0.99527 0.95961 1.69898 1.04279 1.36089 1.44562 0.85154 0.78361 0.78107 0.78039 1.18693 1.19727 1.20388 1.25470 1.04875 0.85252 0.93525 1.98653 1.92845 1.47378 1.81077 1.21271 1.01647 0.91931 1.13565 1.17991 0.90329 0.80384 0.96720 1.91490 1.80568 1.47207 1.92591 0.86512 0.87309 0.87751 0.78056 0.81343 0.91456 0.86470 0.89673 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 10.19 71.24 0.73 -1.71 16 2 C 0.39 10.54 7.20 27.89 0.20 10.74 16 3 O -0.51 -18.76 16.10 -3.13 -0.05 -18.81 16 4 C -0.27 -7.99 5.88 -20.11 -0.12 -8.10 16 5 C 0.01 0.29 9.38 22.32 0.21 0.50 16 6 C -0.18 -4.79 9.91 22.09 0.22 -4.57 16 7 C 0.19 7.22 5.97 22.66 0.14 7.36 16 8 O -0.31 -13.10 9.71 -89.82 -0.87 -13.97 16 9 C 0.21 9.81 2.19 29.85 0.07 9.88 16 10 H 0.03 1.58 5.35 -2.39 -0.01 1.57 16 11 C -0.55 -27.59 8.89 25.60 0.23 -27.36 16 12 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 13 C 0.03 1.27 5.29 84.65 0.45 1.72 16 14 N -0.91 -47.08 11.29 21.45 0.24 -46.84 16 15 Si 0.98 39.30 29.54 68.60 2.03 41.33 16 16 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 17 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 18 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 19 C -0.03 -1.27 6.17 71.98 0.44 -0.83 16 20 Cl -0.23 -9.32 25.65 -2.72 -0.07 -9.38 16 21 C -0.26 -10.63 7.02 22.38 0.16 -10.48 16 22 C 0.17 6.30 7.29 22.72 0.17 6.46 16 23 F -0.14 -5.97 15.57 44.97 0.70 -5.27 16 24 H 0.12 0.70 5.61 -2.39 -0.01 0.69 16 25 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.20 1.77 5.93 -2.91 -0.02 1.76 16 28 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 30 H 0.12 5.72 5.95 -2.39 -0.01 5.70 16 31 H 0.08 3.61 8.14 -2.39 -0.02 3.59 16 32 H 0.13 5.76 5.11 -2.91 -0.01 5.75 16 Total: -1.00 -63.97 291.12 6.03 -57.94 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.17 Total: 11.39 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 2.88 Total: -16.39 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.24 Total: -46.84 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.92 Total: -32.78 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.70 Total: -5.27 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Atomic # 17 Polarization: -9.32 SS G_CDS: -0.07 Total: -9.38 kcal Total: -63.97 6.03 -57.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225965591.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.471 kcal (2) G-P(sol) polarization free energy of solvation -63.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds