Wall clock time and date at job start Tue Mar 31 2020 05:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76198 * 102.99907 * 2 1 4 4 C 1.38943 * 120.02167 * 359.72219 * 3 2 1 5 5 C 1.38075 * 119.97170 * 179.74619 * 4 3 2 6 6 C 1.38734 * 120.02506 * 0.53550 * 5 4 3 7 7 O 1.35998 * 119.97722 * 179.76625 * 6 5 4 8 8 C 1.42899 * 116.99959 * 356.46842 * 7 6 5 9 9 H 1.08996 * 109.47001 * 27.03962 * 8 7 6 10 10 C 1.50707 * 109.47177 * 147.03958 * 8 7 6 11 11 H 1.07998 * 119.99734 * 359.97438 * 10 8 7 12 12 C 1.37877 * 119.99847 * 179.97438 * 10 8 7 13 13 N 1.31519 * 120.00114 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 119.99927 * 179.97438 * 12 10 8 15 15 H 1.48509 * 109.46748 * 90.00573 * 14 12 10 16 16 H 1.48502 * 109.47566 * 209.99997 * 14 12 10 17 17 H 1.48496 * 109.47332 * 330.00419 * 14 12 10 18 18 C 1.52997 * 109.47151 * 267.03738 * 8 7 6 19 19 Cl 1.80300 * 109.47178 * 64.99790 * 18 8 7 20 20 C 1.38698 * 120.04665 * 359.73872 * 6 5 4 21 21 C 1.38103 * 120.02912 * 359.97438 * 20 6 5 22 22 C 1.50701 * 120.01638 * 179.97438 * 21 20 6 23 23 H 1.08993 * 109.47471 * 60.00366 * 1 2 3 24 24 H 1.09006 * 109.46953 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47224 * 299.99767 * 1 2 3 26 26 H 1.07994 * 120.01854 * 0.02682 * 4 3 2 27 27 H 1.08000 * 119.98990 * 180.25093 * 5 4 3 28 28 H 0.96993 * 119.99995 * 179.97438 * 13 12 10 29 29 H 1.08999 * 109.47204 * 185.00102 * 18 8 7 30 30 H 1.09000 * 109.47022 * 305.00165 * 18 8 7 31 31 H 1.08005 * 119.98126 * 180.02562 * 20 6 5 32 32 H 1.09000 * 109.46764 * 270.02036 * 22 21 20 33 33 H 1.08997 * 109.46780 * 30.02335 * 22 21 20 34 34 H 1.08994 * 109.47065 * 150.02237 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1945 2.6648 -0.0058 5 6 1.5062 4.0099 -0.0005 6 6 2.8331 4.4150 -0.0006 7 8 3.1390 5.7401 -0.0002 8 6 2.0467 6.6581 -0.0781 9 1 1.1535 6.1965 0.3426 10 6 2.3817 7.9048 0.6996 11 1 3.3334 7.9875 1.2034 12 6 1.4732 8.9396 0.7680 13 7 0.3140 8.8386 0.1549 14 14 1.8881 10.4845 1.7325 15 1 2.5582 11.4618 0.8374 16 1 0.6399 11.0819 2.2715 17 1 2.7961 10.1382 2.8554 18 6 1.7909 7.0234 -1.5416 19 17 1.2476 5.5581 -2.4408 20 6 3.8479 3.4695 -0.0005 21 6 3.5385 2.1236 0.0001 22 6 4.6413 1.0965 -0.0004 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.1616 2.3497 -0.0099 27 1 0.7169 4.7470 -0.0010 28 1 -0.3252 9.5665 0.2034 29 1 1.0178 7.7899 -1.5951 30 1 2.7103 7.4030 -1.9874 31 1 4.8805 3.7860 -0.0002 32 1 4.9066 0.8488 -1.0282 33 1 5.5139 1.5002 0.5130 34 1 4.3009 0.1977 0.5137 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226013774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:51 Heat of formation + Delta-G solvation = -34.988069 kcal Electronic energy + Delta-G solvation = -18207.433823 eV Core-core repulsion = 15257.296461 eV Total energy + Delta-G solvation = -2950.137362 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 286.054 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.51534 -37.15989 -34.87296 -33.51419 -32.36256 -30.45137 -29.21335 -28.40495 -26.63084 -25.37537 -22.39536 -22.17807 -20.03473 -17.57868 -16.81460 -16.69702 -15.47002 -15.04702 -14.54073 -14.46427 -14.15069 -13.80490 -13.47544 -13.34459 -13.20434 -12.60939 -12.47116 -12.16115 -12.08565 -11.83387 -11.68359 -11.49966 -11.18507 -11.04944 -10.84737 -10.62029 -10.26280 -10.03365 -9.73920 -9.49283 -9.26955 -8.72978 -8.41673 -8.29357 -6.78181 -6.47526 -4.55253 1.74396 1.78294 1.80027 2.63333 3.10066 3.18283 3.22147 3.36718 4.00125 4.15306 4.38257 4.88929 5.06627 5.09016 5.11771 5.21845 5.51399 5.63752 5.73851 5.78695 5.82314 5.96077 6.11429 6.18029 6.24655 6.37485 6.55714 6.76186 6.78702 6.93783 7.08673 7.23401 7.51168 7.72115 8.29198 8.63654 9.12804 10.59554 Molecular weight = 286.05amu Principal moments of inertia in cm(-1) A = 0.024149 B = 0.004620 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.192127 B = 6059.664629 C = 6312.098589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.135 6.135 3 C -0.141 4.141 4 C -0.089 4.089 5 C -0.179 4.179 6 C 0.163 3.837 7 O -0.309 6.309 8 C 0.205 3.795 9 H 0.051 0.949 10 C -0.522 4.522 11 H 0.077 0.923 12 C 0.064 3.936 13 N -0.889 5.889 14 Si 0.917 3.083 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.036 4.036 19 Cl -0.240 7.240 20 C -0.156 4.156 21 C -0.033 4.033 22 C -0.111 4.111 23 H 0.081 0.919 24 H 0.101 0.899 25 H 0.080 0.920 26 H 0.117 0.883 27 H 0.140 0.860 28 H 0.272 0.728 29 H 0.134 0.866 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.349 -11.812 -0.922 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.104 5.896 3 C -0.253 4.253 4 C -0.112 4.112 5 C -0.199 4.199 6 C 0.114 3.886 7 O -0.222 6.222 8 C 0.150 3.850 9 H 0.069 0.931 10 C -0.559 4.559 11 H 0.095 0.905 12 C -0.139 4.139 13 N -0.527 5.527 14 Si 0.743 3.257 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.194 1.194 18 C -0.099 4.099 19 Cl -0.214 7.214 20 C -0.176 4.176 21 C -0.039 4.039 22 C -0.168 4.168 23 H 0.100 0.900 24 H 0.119 0.881 25 H 0.099 0.901 26 H 0.135 0.865 27 H 0.158 0.842 28 H 0.082 0.918 29 H 0.151 0.849 30 H 0.093 0.907 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.949 -12.727 -1.009 12.915 hybrid contribution -1.149 2.055 0.255 2.368 sum 0.801 -10.673 -0.755 10.729 Atomic orbital electron populations 1.23623 0.95872 1.06285 1.05522 1.84981 1.05544 1.04964 1.94123 1.21110 0.95868 0.95261 1.13096 1.20814 0.97539 0.92518 1.00315 1.21388 0.96671 0.96230 1.05591 1.19105 0.92551 0.85072 0.91871 1.86162 1.38259 1.11802 1.85999 1.20546 0.85775 0.87591 0.91115 0.93116 1.21026 1.04079 0.99115 1.31721 0.90513 1.24981 0.94381 0.99124 0.95444 1.69794 1.07061 1.33525 1.42274 0.86170 0.78126 0.81399 0.80015 1.20116 1.20744 1.19358 1.25768 1.03058 0.87406 0.93628 1.98646 1.92596 1.49685 1.80518 1.20141 0.98530 0.90405 1.08546 1.19128 0.92296 0.93592 0.98852 1.20747 0.96389 0.97235 1.02420 0.90046 0.88066 0.90052 0.86509 0.84228 0.91781 0.84866 0.90699 0.85399 0.91007 0.91304 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.15 101.05 0.92 -0.59 16 2 S -0.14 -1.80 20.76 -107.50 -2.23 -4.04 16 3 C -0.14 -2.31 6.11 -39.07 -0.24 -2.55 16 4 C -0.09 -1.53 9.36 -39.38 -0.37 -1.90 16 5 C -0.18 -3.51 7.04 -39.46 -0.28 -3.78 16 6 C 0.16 3.35 5.96 -39.23 -0.23 3.11 16 7 O -0.31 -7.12 9.73 -19.74 -0.19 -7.31 16 8 C 0.20 4.91 2.19 -27.88 -0.06 4.85 16 9 H 0.05 1.29 5.39 -51.93 -0.28 1.01 16 10 C -0.52 -13.43 8.89 -34.44 -0.31 -13.74 16 11 H 0.08 1.99 7.81 -52.49 -0.41 1.58 16 12 C 0.06 1.61 5.29 -17.82 -0.09 1.51 16 13 N -0.89 -22.82 11.29 55.43 0.63 -22.19 16 14 Si 0.92 19.67 29.54 -169.99 -5.02 14.64 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 C -0.04 -0.81 6.17 37.16 0.23 -0.58 16 19 Cl -0.24 -4.95 25.60 -51.86 -1.33 -6.28 16 20 C -0.16 -2.81 9.63 -39.46 -0.38 -3.19 16 21 C -0.03 -0.54 5.90 -104.42 -0.62 -1.16 16 22 C -0.11 -1.41 9.57 36.01 0.34 -1.07 16 23 H 0.08 0.85 7.73 -51.93 -0.40 0.45 16 24 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 25 H 0.08 0.83 7.76 -51.92 -0.40 0.43 16 26 H 0.12 1.75 5.87 -52.49 -0.31 1.44 16 27 H 0.14 2.92 5.10 -52.49 -0.27 2.65 16 28 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.13 3.22 5.95 -51.93 -0.31 2.91 16 30 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 31 H 0.13 2.11 8.06 -52.48 -0.42 1.68 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.07 0.85 6.78 -51.93 -0.35 0.50 16 LS Contribution 304.77 15.07 4.59 4.59 Total: -1.00 -26.08 304.77 -8.61 -34.69 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.98 Total: 4.97 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.08 Total: -19.08 kcal Atomic # 7 Polarization: -22.82 SS G_CDS: 0.63 Total: -22.19 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.19 Total: -7.31 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.23 Total: -4.04 kcal Atomic # 17 Polarization: -4.95 SS G_CDS: -1.33 Total: -6.28 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.08 -8.61 -34.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226013774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.296 kcal (2) G-P(sol) polarization free energy of solvation -26.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds