Wall clock time and date at job start Tue Mar 31 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00265 * 2 1 4 4 H 1.48497 * 109.46969 * 270.00532 * 3 2 1 5 5 H 1.48502 * 109.46853 * 30.00156 * 3 2 1 6 6 H 1.48496 * 109.47004 * 149.99823 * 3 2 1 7 7 C 1.37879 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99765 * 189.41999 * 7 2 1 9 9 C 1.50694 * 120.00080 * 9.42324 * 7 2 1 10 10 H 1.09004 * 109.47073 * 185.50269 * 9 7 2 11 11 O 1.42907 * 109.47068 * 305.49576 * 9 7 2 12 12 C 1.35891 * 117.00087 * 279.38884 * 11 9 7 13 13 C 1.38837 * 120.01981 * 4.59450 * 12 11 9 14 14 C 1.38185 * 120.10699 * 180.02562 * 13 12 11 15 15 C 1.38135 * 120.13485 * 0.25684 * 14 13 12 16 16 C 1.38992 * 120.02776 * 359.44743 * 15 14 13 17 17 S 1.76207 * 120.05213 * 180.27943 * 16 15 14 18 18 C 1.38559 * 120.01854 * 184.62126 * 12 11 9 19 19 C 1.50697 * 109.47402 * 65.49752 * 9 7 2 20 20 C 1.38231 * 120.00128 * 271.15062 * 19 9 7 21 21 C 1.38238 * 119.99825 * 179.81187 * 20 19 9 22 22 C 1.38226 * 120.00196 * 0.39612 * 21 20 19 23 23 C 1.38242 * 119.99860 * 359.86111 * 22 21 20 24 24 C 1.38226 * 120.00176 * 359.95252 * 23 22 21 25 25 H 0.97005 * 119.99850 * 359.97438 * 1 2 3 26 26 H 1.07995 * 119.94291 * 0.02562 * 13 12 11 27 27 H 1.08000 * 119.93387 * 179.97438 * 14 13 12 28 28 H 1.08003 * 119.98789 * 179.72858 * 15 14 13 29 29 H 1.34503 * 102.99676 * 270.29228 * 17 16 15 30 30 H 1.07999 * 120.05867 * 359.95000 * 18 12 11 31 31 H 1.08003 * 120.00145 * 359.97438 * 20 19 9 32 32 H 1.08002 * 119.99966 * 180.23013 * 21 20 19 33 33 H 1.08000 * 120.00353 * 179.83836 * 22 21 20 34 34 H 1.08003 * 119.99627 * 179.97438 * 23 22 21 35 35 H 1.08002 * 120.00427 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0735 -1.2005 0.1525 9 6 1.2662 -2.4902 -0.2148 10 1 1.9541 -3.3259 -0.0857 11 8 0.2044 -2.5963 0.7357 12 6 0.5349 -3.0139 1.9859 13 6 1.8663 -3.2237 2.3188 14 6 2.2045 -3.6487 3.5895 15 6 1.2189 -3.8716 4.5314 16 6 -0.1153 -3.6574 4.2060 17 16 -1.3724 -3.9344 5.4093 18 6 -0.4567 -3.2310 2.9291 19 6 0.6965 -2.5193 -1.6096 20 6 -0.5626 -2.0034 -1.8529 21 6 -1.0835 -2.0265 -3.1332 22 6 -0.3487 -2.5730 -4.1686 23 6 0.9084 -3.0937 -3.9243 24 6 1.4309 -3.0671 -2.6449 25 1 -0.4850 0.8401 0.0004 26 1 2.6390 -3.0544 1.5835 27 1 3.2410 -3.8115 3.8453 28 1 1.4856 -4.2080 5.5224 29 1 -1.6872 -5.2291 5.2254 30 1 -1.4929 -3.0679 2.6719 31 1 -1.1384 -1.5798 -1.0432 32 1 -2.0658 -1.6201 -3.3239 33 1 -0.7567 -2.5934 -5.1683 34 1 1.4824 -3.5210 -4.7332 35 1 2.4132 -3.4736 -2.4541 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226016491.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:57 Heat of formation + Delta-G solvation = 9.674448 kcal Electronic energy + Delta-G solvation = -19812.478537 eV Core-core repulsion = 16866.710737 eV Total energy + Delta-G solvation = -2945.767801 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87607 -39.68143 -37.90661 -34.85221 -32.59665 -31.87352 -31.47069 -30.42820 -28.77972 -25.27814 -23.77533 -23.38575 -22.81347 -21.73584 -19.68782 -18.45466 -17.80441 -17.61643 -16.91267 -16.68670 -16.46667 -15.79953 -15.48087 -15.34920 -15.09920 -14.49050 -14.29024 -14.05980 -13.91225 -13.62292 -13.35208 -13.06652 -12.85648 -12.55247 -12.38364 -12.36019 -12.02558 -11.78346 -11.61853 -11.15055 -11.05961 -10.65395 -9.83346 -9.54432 -9.28955 -9.15157 -8.84339 -8.10006 -6.36319 0.04787 0.63298 0.70544 0.75068 0.84629 1.37253 1.40295 1.46808 1.85964 2.36373 2.80672 2.90757 3.20607 3.23640 4.03471 4.23731 4.26278 4.32218 4.38720 4.45119 4.53382 4.60680 4.63488 4.73527 4.91117 5.05735 5.09088 5.34781 5.35479 5.51231 5.53266 5.61398 5.63592 5.78841 5.90144 5.92394 5.98591 6.20329 6.42053 6.57670 7.09105 7.40112 8.83690 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.005702 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.718670 B = 4909.453571 C = 5731.450459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.048 3.952 3 Si 0.940 3.060 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.566 4.566 8 H 0.062 0.938 9 C 0.242 3.758 10 H 0.035 0.965 11 O -0.306 6.306 12 C 0.140 3.860 13 C -0.190 4.190 14 C -0.085 4.085 15 C -0.130 4.130 16 C -0.081 4.081 17 S -0.127 6.127 18 C -0.145 4.145 19 C -0.065 4.065 20 C -0.094 4.094 21 C -0.149 4.149 22 C -0.140 4.140 23 C -0.132 4.132 24 C -0.137 4.137 25 H 0.261 0.739 26 H 0.129 0.871 27 H 0.156 0.844 28 H 0.156 0.844 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.172 -7.424 1.641 7.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.159 4.159 3 Si 0.766 3.234 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.603 4.603 8 H 0.081 0.919 9 C 0.188 3.812 10 H 0.052 0.948 11 O -0.218 6.218 12 C 0.090 3.910 13 C -0.209 4.209 14 C -0.105 4.105 15 C -0.150 4.150 16 C -0.192 4.192 17 S 0.030 5.970 18 C -0.167 4.167 19 C -0.065 4.065 20 C -0.113 4.113 21 C -0.167 4.167 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.155 4.155 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.174 0.826 28 H 0.174 0.826 29 H 0.049 0.951 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.163 -7.186 2.249 7.531 hybrid contribution 0.995 0.529 -1.001 1.507 sum 1.158 -6.657 1.248 6.871 Atomic orbital electron populations 1.70109 1.06726 1.26879 1.45166 1.25552 0.95409 1.01627 0.93298 0.85843 0.79221 0.80251 0.78094 1.20334 1.21159 1.19210 1.21476 0.94286 0.91563 1.52940 0.91945 1.18918 0.84119 0.95174 0.83019 0.94760 1.86199 1.39220 1.79038 1.17381 1.19338 0.93435 0.91552 0.86639 1.21696 0.95444 1.04337 0.99381 1.21273 1.00659 0.96933 0.91616 1.21580 0.90606 1.02134 1.00713 1.20964 0.96524 1.06768 0.94994 1.85717 1.48753 1.16818 1.45710 1.20807 0.98759 1.04948 0.92152 1.20042 0.94439 0.96520 0.95519 1.21399 0.96049 0.96380 0.97451 1.21394 1.00631 1.01364 0.93274 1.21306 0.95261 0.99884 0.99290 1.21244 0.96389 1.01100 0.96290 1.21030 0.99951 1.01288 0.93275 0.92988 0.85298 0.82622 0.82635 0.95088 0.86012 0.86064 0.85834 0.83940 0.83660 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.22 9.43 21.45 0.20 -46.02 16 2 C 0.05 2.49 5.21 84.65 0.44 2.93 16 3 Si 0.94 42.17 29.55 68.60 2.03 44.20 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.57 -29.05 7.56 25.60 0.19 -28.86 16 8 H 0.06 3.15 7.83 -2.91 -0.02 3.13 16 9 C 0.24 11.64 2.12 29.10 0.06 11.70 16 10 H 0.03 1.57 6.49 -2.38 -0.02 1.55 16 11 O -0.31 -15.26 7.69 -92.32 -0.71 -15.97 16 12 C 0.14 6.20 6.55 22.49 0.15 6.34 16 13 C -0.19 -7.41 8.62 22.40 0.19 -7.22 16 14 C -0.09 -2.64 10.03 22.23 0.22 -2.41 16 15 C -0.13 -3.84 9.79 22.43 0.22 -3.62 16 16 C -0.08 -2.71 6.11 22.61 0.14 -2.57 16 17 S -0.13 -3.55 25.78 -56.49 -1.46 -5.01 16 18 C -0.15 -5.83 9.73 22.50 0.22 -5.61 16 19 C -0.06 -2.97 4.84 -19.87 -0.10 -3.07 16 20 C -0.09 -4.36 8.12 22.27 0.18 -4.18 16 21 C -0.15 -5.72 10.05 22.27 0.22 -5.49 16 22 C -0.14 -4.59 10.05 22.27 0.22 -4.36 16 23 C -0.13 -4.37 10.05 22.27 0.22 -4.15 16 24 C -0.14 -5.36 9.70 22.27 0.22 -5.14 16 25 H 0.26 13.68 8.31 -92.70 -0.77 12.90 16 26 H 0.13 5.19 5.59 -2.91 -0.02 5.17 16 27 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 28 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 29 H 0.08 2.09 9.07 73.35 0.67 2.75 16 30 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 31 H 0.12 6.31 5.86 -2.91 -0.02 6.29 16 32 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 34 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -58.42 311.84 4.65 -53.76 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 1.78 Total: 24.75 kcal Atomic # 6 Polarization: -58.53 SS G_CDS: 2.81 Total: -55.72 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.20 Total: -46.02 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.71 Total: -15.97 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.46 Total: -5.01 kcal Total: -58.42 4.65 -53.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226016491.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.439 kcal (2) G-P(sol) polarization free energy of solvation -58.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds