Wall clock time and date at job start Tue Mar 31 2020 05:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21296 * 120.00238 * 2 1 4 4 C 1.46790 * 119.99752 * 180.02562 * 2 1 3 5 5 C 1.40056 * 120.21552 * 5.90639 * 4 2 1 6 6 C 1.37648 * 119.92720 * 180.02562 * 5 4 2 7 7 C 1.38634 * 120.35428 * 359.97438 * 6 5 4 8 8 C 1.38207 * 120.43471 * 0.25868 * 7 6 5 9 9 F 1.35093 * 119.96734 * 179.72274 * 8 7 6 10 10 C 1.38905 * 120.06515 * 359.48690 * 8 7 6 11 11 O 1.35651 * 120.18082 * 180.22991 * 10 8 7 12 12 C 1.42899 * 117.00237 * 286.39480 * 11 10 8 13 13 H 1.09004 * 109.47166 * 37.00125 * 12 11 10 14 14 C 1.50698 * 109.46960 * 156.99578 * 12 11 10 15 15 H 1.07998 * 120.00677 * 0.02562 * 14 12 11 16 16 C 1.37886 * 120.00014 * 179.97438 * 14 12 11 17 17 N 1.31518 * 119.99586 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00069 * 180.02562 * 16 14 12 19 19 H 1.48507 * 109.46869 * 60.00333 * 18 16 14 20 20 H 1.48499 * 109.47250 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47211 * 300.00290 * 18 16 14 22 22 C 1.52995 * 109.46943 * 276.99948 * 12 11 10 23 23 Cl 1.80293 * 109.47318 * 66.90001 * 22 12 11 24 24 H 1.08996 * 109.46784 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46947 * 299.99988 * 1 2 3 26 26 H 1.08995 * 109.46944 * 59.99640 * 1 2 3 27 27 H 1.08003 * 120.04035 * 359.97438 * 5 4 2 28 28 H 1.07997 * 119.82552 * 179.97438 * 6 5 4 29 29 H 1.08005 * 119.78697 * 179.97438 * 7 6 5 30 30 H 0.96998 * 119.99475 * 179.97438 * 17 16 14 31 31 H 1.09004 * 109.46622 * 186.89615 * 22 12 11 32 32 H 1.09001 * 109.47212 * 306.89429 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 6 2.2409 -1.2713 -0.0006 5 6 1.5507 -2.4835 -0.1257 6 6 2.2448 -3.6722 -0.1249 7 6 3.6257 -3.6771 -0.0015 8 6 4.3212 -2.4898 0.1277 9 9 5.6662 -2.5059 0.2530 10 6 3.6392 -1.2797 0.1238 11 8 4.3199 -0.1128 0.2457 12 6 4.8406 0.2026 1.5386 13 1 5.1895 -0.7098 2.0222 14 6 5.9901 1.1665 1.3957 15 1 6.2926 1.5049 0.4157 16 6 6.6551 1.6175 2.5163 17 7 6.2864 1.2059 3.7097 18 14 8.0795 2.8128 2.3392 19 1 7.6037 4.0556 1.6801 20 1 8.6198 3.1415 3.6828 21 1 9.1468 2.1923 1.5141 22 6 3.7412 0.8422 2.3889 23 17 2.4584 -0.3780 2.7296 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 0.4750 -2.4858 -0.2217 28 1 1.7109 -4.6060 -0.2211 29 1 4.1610 -4.6151 -0.0016 30 1 6.7544 1.5228 4.4980 31 1 4.1671 1.1937 3.3287 32 1 3.3078 1.6841 1.8490 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227341099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:01 Heat of formation + Delta-G solvation = -120.257237 kcal Electronic energy + Delta-G solvation = -21216.208276 eV Core-core repulsion = 17696.160189 eV Total energy + Delta-G solvation = -3520.048087 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.056 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.87717 -41.22357 -39.26476 -38.45518 -36.62807 -35.39368 -32.86139 -31.82102 -30.16675 -29.94925 -27.32919 -24.97283 -24.05577 -22.54182 -21.00922 -18.98360 -18.75106 -18.10117 -17.80496 -17.12080 -16.58111 -16.44548 -16.09326 -15.73189 -15.52545 -15.46139 -15.17516 -14.50715 -14.09900 -13.95151 -13.77972 -13.39282 -13.15160 -13.04046 -12.86663 -12.80446 -12.65532 -12.43961 -12.28283 -11.88019 -11.44153 -11.30748 -10.90754 -10.69382 -10.33457 -9.78764 -9.37898 -8.40977 -6.57149 -0.36163 0.12682 1.34769 1.37611 1.47759 1.52873 1.55862 2.25565 2.54762 2.90717 3.02347 3.11453 3.48770 3.90025 3.95153 4.17971 4.30908 4.34197 4.35321 4.52743 4.62787 4.71753 4.86828 5.01687 5.05277 5.15286 5.20714 5.28787 5.40791 5.47518 5.78746 5.81471 6.43947 6.80110 6.83310 7.15457 8.65974 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.007271 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.988321 B = 3850.009702 C = 4494.623197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.383 3.617 3 O -0.481 6.481 4 C -0.170 4.170 5 C -0.065 4.065 6 C -0.105 4.105 7 C -0.110 4.110 8 C 0.011 3.989 9 F -0.155 7.155 10 C 0.101 3.899 11 O -0.338 6.338 12 C 0.241 3.759 13 H -0.001 1.001 14 C -0.548 4.548 15 H 0.059 0.941 16 C 0.023 3.977 17 N -0.910 5.910 18 Si 0.980 3.020 19 H -0.267 1.267 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.019 4.019 23 Cl -0.218 7.218 24 H 0.115 0.885 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.187 0.813 28 H 0.190 0.810 29 H 0.164 0.836 30 H 0.277 0.723 31 H 0.109 0.891 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.071 -9.794 -5.541 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.262 3.738 3 O -0.358 6.358 4 C -0.171 4.171 5 C -0.083 4.083 6 C -0.122 4.122 7 C -0.129 4.129 8 C -0.009 4.009 9 F -0.134 7.134 10 C 0.055 3.945 11 O -0.255 6.255 12 C 0.187 3.813 13 H 0.017 0.983 14 C -0.586 4.586 15 H 0.077 0.923 16 C -0.177 4.177 17 N -0.548 5.548 18 Si 0.803 3.197 19 H -0.192 1.192 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.082 4.082 23 Cl -0.192 7.192 24 H 0.133 0.867 25 H 0.112 0.888 26 H 0.126 0.874 27 H 0.204 0.796 28 H 0.207 0.793 29 H 0.182 0.818 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.714 -9.163 -5.428 16.585 hybrid contribution 1.479 0.615 0.405 1.652 sum -11.235 -8.548 -5.023 14.984 Atomic orbital electron populations 1.22234 0.89836 1.06854 1.05452 1.22942 0.93475 0.86879 0.70511 1.90604 1.73107 1.35329 1.36784 1.21019 0.90981 0.98170 1.06941 1.21951 1.02228 0.89330 0.94772 1.21453 0.91781 1.00185 0.98804 1.21653 0.96536 0.95852 0.98868 1.18746 0.77474 0.95810 1.08852 1.91448 1.30562 1.97417 1.93935 1.19656 0.91485 0.85497 0.97906 1.86013 1.70408 1.35624 1.33459 1.19958 0.89742 0.94280 0.77305 0.98312 1.21162 1.14628 1.28475 0.94325 0.92271 1.25804 1.00052 0.97796 0.94078 1.69899 1.42063 1.44282 0.98532 0.85266 0.77970 0.78426 0.78032 1.19204 1.19257 1.19463 1.25417 0.87361 0.91612 1.03796 1.98581 1.60183 1.64211 1.96178 0.86675 0.88849 0.87419 0.79605 0.79296 0.81830 0.91396 0.87306 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.80 10.19 71.24 0.73 -3.08 16 2 C 0.38 13.03 5.28 27.93 0.15 13.18 16 3 O -0.48 -21.62 13.55 17.80 0.24 -21.38 16 4 C -0.17 -5.72 4.23 -20.08 -0.08 -5.80 16 5 C -0.07 -1.39 9.42 22.57 0.21 -1.18 16 6 C -0.10 -1.98 10.02 22.22 0.22 -1.76 16 7 C -0.11 -2.95 10.01 22.36 0.22 -2.72 16 8 C 0.01 0.43 6.98 22.42 0.16 0.58 16 9 F -0.15 -7.15 16.63 44.97 0.75 -6.40 16 10 C 0.10 4.39 4.69 22.95 0.11 4.50 16 11 O -0.34 -18.20 7.79 -68.78 -0.54 -18.74 16 12 C 0.24 13.64 2.26 29.85 0.07 13.71 16 13 H 0.00 -0.05 7.40 -2.38 -0.02 -0.06 16 14 C -0.55 -32.81 8.89 25.60 0.23 -32.58 16 15 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 16 C 0.02 1.32 5.28 84.66 0.45 1.76 16 17 N -0.91 -51.83 11.29 21.45 0.24 -51.58 16 18 Si 0.98 44.24 29.54 68.60 2.03 46.26 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C -0.02 -0.99 5.45 71.98 0.39 -0.60 16 23 Cl -0.22 -9.28 23.84 -2.72 -0.06 -9.34 16 24 H 0.11 1.39 5.64 -2.39 -0.01 1.38 16 25 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.19 2.04 5.98 -2.91 -0.02 2.02 16 28 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 29 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 30 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.11 6.06 5.91 -2.39 -0.01 6.05 16 32 H 0.07 3.94 6.71 -2.39 -0.02 3.92 16 Total: -1.00 -75.52 286.81 6.67 -68.85 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.16 Total: 6.32 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 2.85 Total: -13.98 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.24 Total: -51.58 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.29 Total: -40.12 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.75 Total: -6.40 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -9.28 SS G_CDS: -0.06 Total: -9.34 kcal Total: -75.52 6.67 -68.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227341099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.407 kcal (2) G-P(sol) polarization free energy of solvation -75.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds