Wall clock time and date at job start Tue Mar 31 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00576 * 2 1 4 4 H 1.48502 * 109.47424 * 85.01001 * 3 2 1 5 5 H 1.48507 * 109.46922 * 325.01080 * 3 2 1 6 6 H 1.48500 * 109.47468 * 205.01648 * 3 2 1 7 7 C 1.38811 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00533 * 187.31510 * 7 2 1 9 9 N 1.36942 * 119.99859 * 7.32562 * 7 2 1 10 10 C 1.47023 * 125.64451 * 5.83909 * 9 7 2 11 11 C 1.54327 * 107.26634 * 181.02675 * 10 9 7 12 12 C 1.55153 * 102.94777 * 22.19238 * 11 10 9 13 13 H 1.09004 * 111.00546 * 82.57104 * 12 11 10 14 14 O 1.42894 * 111.00595 * 206.42447 * 12 11 10 15 15 C 1.35732 * 117.00004 * 209.99493 * 14 12 11 16 16 N 1.32247 * 119.68711 * 0.02562 * 15 14 12 17 17 C 1.32046 * 121.65724 * 179.97438 * 16 15 14 18 18 Cl 1.73595 * 119.58052 * 179.97438 * 17 16 15 19 19 C 1.38231 * 120.84347 * 359.97438 * 17 16 15 20 20 C 1.38748 * 119.29391 * 0.02562 * 19 17 16 21 21 C 1.38603 * 118.47717 * 359.75029 * 20 19 17 22 22 F 1.35105 * 120.44959 * 180.26421 * 21 20 19 23 23 C 1.47421 * 125.64804 * 185.53373 * 9 7 2 24 24 H 0.97007 * 119.99060 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.88572 * 300.43730 * 10 9 7 26 26 H 1.08994 * 109.88288 * 61.60707 * 10 9 7 27 27 H 1.09001 * 110.72017 * 140.55988 * 11 10 9 28 28 H 1.09002 * 110.71965 * 263.82339 * 11 10 9 29 29 H 1.07998 * 120.35401 * 179.97438 * 19 17 16 30 30 H 1.08003 * 120.76096 * 180.02562 * 20 19 17 31 31 H 1.08997 * 110.36765 * 274.74416 * 23 9 7 32 32 H 1.09001 * 110.36963 * 37.06933 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3925 2.1072 1.3948 5 1 1.5045 2.6199 -0.8029 6 1 3.5966 1.4119 -0.5920 7 6 2.0102 -1.2021 0.0005 8 1 3.0836 -1.2060 0.1196 9 7 1.3338 -2.3833 -0.1502 10 6 -0.1010 -2.5179 -0.4410 11 6 -0.4176 -4.0273 -0.4963 12 6 0.7389 -4.6554 0.3255 13 1 0.5290 -4.6089 1.3941 14 8 0.9889 -6.0004 -0.0872 15 6 1.4641 -6.8554 0.8538 16 7 1.6722 -6.4233 2.0862 17 6 2.1329 -7.2214 3.0319 18 17 2.3869 -6.5969 4.6316 19 6 2.4155 -8.5478 2.7644 20 6 2.2108 -9.0406 1.4836 21 6 1.7219 -8.1789 0.5143 22 9 1.5028 -8.6180 -0.7445 23 6 1.9251 -3.7303 -0.0538 24 1 -0.4849 0.8402 -0.0004 25 1 -0.6853 -2.0453 0.3485 26 1 -0.3295 -2.0558 -1.4014 27 1 -1.3802 -4.2368 -0.0298 28 1 -0.3999 -4.3877 -1.5248 29 1 2.7924 -9.1934 3.5438 30 1 2.4233 -10.0731 1.2485 31 1 2.3496 -4.0277 -1.0127 32 1 2.6885 -3.7549 0.7239 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227882549.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:48 Heat of formation + Delta-G solvation = -17.339537 kcal Electronic energy + Delta-G solvation = -20068.040814 eV Core-core repulsion = 16584.748325 eV Total energy + Delta-G solvation = -3483.292489 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.063 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.02733 -40.74356 -38.57703 -36.86267 -36.21858 -32.70894 -32.33354 -30.32594 -29.18739 -27.36788 -24.85132 -23.86482 -23.53418 -20.55253 -20.16465 -18.72435 -17.88747 -17.53163 -16.86384 -16.36846 -16.06263 -14.84911 -14.73283 -14.50845 -14.27150 -14.11363 -13.57750 -13.55387 -12.97160 -12.86052 -12.38031 -12.07484 -11.78015 -11.49704 -11.42266 -10.93452 -10.81612 -10.43714 -10.36868 -10.15846 -10.11132 -9.93525 -9.79146 -9.69429 -8.64522 -8.49098 -6.86485 -5.71870 -3.08844 0.51064 0.77686 1.50942 2.85226 3.19914 3.40545 3.45845 3.48219 3.85776 4.08503 4.38129 4.49665 4.63029 5.01135 5.21630 5.28928 5.41612 5.46623 5.53983 5.67807 5.75080 5.91077 6.21659 6.38051 6.42948 6.57983 6.63130 7.19653 7.40217 7.42730 7.61169 7.78445 8.23004 9.17974 9.78488 10.43047 11.37758 Molecular weight = 286.06amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.004496 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.367019 B = 6226.628385 C = 7145.206172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.599 5.599 10 C 0.173 3.827 11 C -0.139 4.139 12 C 0.067 3.933 13 H 0.102 0.898 14 O -0.283 6.283 15 C 0.333 3.667 16 N -0.506 5.506 17 C 0.209 3.791 18 Cl -0.019 7.019 19 C -0.176 4.176 20 C -0.063 4.063 21 C 0.027 3.973 22 F -0.119 7.119 23 C 0.127 3.873 24 H 0.253 0.747 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.156 0.844 30 H 0.163 0.837 31 H 0.027 0.973 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 -19.556 5.514 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.049 3.951 11 C -0.177 4.177 12 C 0.011 3.989 13 H 0.120 0.880 14 O -0.188 6.188 15 C 0.151 3.849 16 N -0.232 5.232 17 C 0.045 3.955 18 Cl 0.010 6.990 19 C -0.197 4.197 20 C -0.089 4.089 21 C 0.004 3.996 22 F -0.097 7.097 23 C 0.000 4.000 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.173 0.827 30 H 0.180 0.820 31 H 0.045 0.955 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.521 -18.420 5.502 19.389 hybrid contribution 0.575 0.227 -0.116 0.629 sum 3.096 -18.193 5.386 19.224 Atomic orbital electron populations 1.69939 1.04966 1.25148 1.56679 1.24818 0.95694 0.97760 1.02027 0.86078 0.78691 0.83337 0.77524 1.21554 1.21573 1.20589 1.19055 0.90952 0.82322 1.43371 0.90346 1.44316 1.05191 0.99541 1.83617 1.21275 0.85611 0.87392 1.00841 1.23091 0.96072 0.98972 0.99561 1.24090 0.98370 0.75610 1.00837 0.87971 1.86378 1.76380 1.22792 1.33234 1.19711 0.91202 0.87884 0.86083 1.66718 1.18129 1.38479 0.99910 1.21350 0.96359 0.89469 0.88320 1.98433 1.94195 1.88432 1.17931 1.21525 1.05942 0.94442 0.97835 1.21422 0.95788 1.00539 0.91143 1.17634 1.08749 0.91006 0.82199 1.91550 1.92693 1.89208 1.36266 1.21846 0.93635 0.86251 0.98239 0.93667 0.91318 0.94581 0.91301 0.91264 0.82654 0.81969 0.95520 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.11 10.46 55.49 0.58 -26.53 16 2 C -0.01 -0.19 5.45 -17.43 -0.09 -0.28 16 3 Si 0.91 22.27 29.56 -169.99 -5.02 17.25 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.51 10.26 -15.06 -0.15 -6.66 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 N -0.60 -15.79 3.39 -169.93 -0.58 -16.37 16 10 C 0.17 4.28 5.45 -3.06 -0.02 4.26 16 11 C -0.14 -2.73 6.68 -24.90 -0.17 -2.89 16 12 C 0.07 1.32 3.37 -24.46 -0.08 1.24 16 13 H 0.10 2.05 6.95 -51.93 -0.36 1.69 16 14 O -0.28 -5.05 9.80 -18.90 -0.19 -5.24 16 15 C 0.33 5.20 7.49 -17.07 -0.13 5.07 16 16 N -0.51 -7.90 8.60 -10.39 -0.09 -7.99 16 17 C 0.21 2.59 7.27 -17.46 -0.13 2.47 16 18 Cl -0.02 -0.22 29.10 -51.86 -1.51 -1.72 16 19 C -0.18 -1.58 9.87 -39.40 -0.39 -1.97 16 20 C -0.06 -0.56 10.15 -39.26 -0.40 -0.96 16 21 C 0.03 0.34 7.35 -39.15 -0.29 0.05 16 22 F -0.12 -1.59 17.13 2.25 0.04 -1.55 16 23 C 0.13 2.84 6.98 -2.41 -0.02 2.82 16 24 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.07 1.86 6.88 -51.93 -0.36 1.50 16 26 H 0.04 0.96 7.98 -51.93 -0.41 0.54 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.16 0.85 8.06 -52.48 -0.42 0.42 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 296.32 15.07 4.47 4.47 Total: -1.00 -31.06 296.32 -7.38 -38.44 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: -3.22 Total: -3.90 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.86 Total: 3.14 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.09 Total: -50.89 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.19 Total: -5.24 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.51 Total: -1.72 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.06 -7.38 -38.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227882549.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.099 kcal (2) G-P(sol) polarization free energy of solvation -31.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds